View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14480_high_18 (Length: 362)
Name: NF14480_high_18
Description: NF14480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14480_high_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 34136447 - 34136088
Alignment:
| Q |
1 |
aaatcaagcctttggaggagcttacaaataagcaaaactctccaaaatataagccatataaatggggtaagttttttgtccacagattacacagtaattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34136447 |
aaatcaagcctttggaggagcttacaaataagcaaaactctccaaaatataagccatataaatggggtaagttttttgtccacagattacacagtaattt |
34136348 |
T |
|
| Q |
101 |
caagaaacaagatgaggagaatcttcaaatttatcattataagctacagtagagaaagatagtttaataaatgtatcacttagctca--tacacaaccaa |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34136347 |
caagaaacaagatgaggagaatcttcaaatttatcattataagctacagtagagaaagatagtttaataaatgtatcacttagctcatttacacaaccaa |
34136248 |
T |
|
| Q |
199 |
agattgatcagtgtttctgaaatgagtgagtggctgcaatcaaatttactagtattgaaattactagtgtgcattatgtaagaattttatctcggaataa |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
34136247 |
agattgatcagtgtttctgaaatgagtgagtggctgcaatcaaatttgctagtattgaaattactagtgtgcattatgtaagaattttatctcagaataa |
34136148 |
T |
|
| Q |
299 |
aagaaaatttagttattaccgttcattatgtttgatcttcaaatattgaattgatataggc |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
34136147 |
aagaaaatttagttattaccgttcattatgtttgatc-tcaaatattgaattgatataggc |
34136088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 34139399 - 34139049
Alignment:
| Q |
1 |
aaatcaagcctttggaggagcttacaaataagcaaaactctccaaaatataagccatataaatggggtaagttttttgtccacagattacacagtaattt |
100 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||| || ||||||||||||| |||||||||||||| |||| |||||| ||| | ||||||| || |
|
|
| T |
34139399 |
aaatcaagcctttggaggagcttattaacgagcaaaacccttcaaaatataagccttataaatggggtaaattttatgtccatagaacaaacagtaactt |
34139300 |
T |
|
| Q |
101 |
caagaaacaagatgaggagaatcttcaaatttatcat--tataagctacagtagagaaagatagtttaataaatgtatcacttagctca--tacacaacc |
196 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||| |||||||||| || |||||| |
|
|
| T |
34139299 |
caagaaacaagaagaggagaatcttcaaatttatcattatataagctaccttagagaaagatattttaataaatgtatgacttagctcatgtaaacaacc |
34139200 |
T |
|
| Q |
197 |
aaagattgatcagtgtttctgaaatgagtgagtggctgcaatcaaatttactagtattgaaattactagtgtgcattatgtaagaattttatctcggaat |
296 |
Q |
| |
|
||||||||||| |||||||| ||||||| | ||||| ||||||||||| ||||| ||||||| | |||||||||||| | | |||||||| ||| |
|
|
| T |
34139199 |
aaagattgatcggtgtttctaaaatgagcaactggctacaatcaaattt----gtattagaattact-gggtgcattatgtatgcaatttatctcataat |
34139105 |
T |
|
| Q |
297 |
aaaagaaaatttagttattaccgttcattatgtttgatcttcaaatattgaattgat |
353 |
Q |
| |
|
|||||| ||| ||||| ||||||||||||||||||||| ||||| ||||| ||||| |
|
|
| T |
34139104 |
aaaagacaataaagttaataccgttcattatgtttgatc-tcaaaaattgatttgat |
34139049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 4 - 147
Target Start/End: Complemental strand, 34142076 - 34141933
Alignment:
| Q |
4 |
tcaagcctttggaggagcttacaaataagcaaaactctccaaaatataagccatataaatggggtaagttttttgtccacagattacacagtaatttcaa |
103 |
Q |
| |
|
|||| ||||| || ||||||| |||| |||||||| || ||||||||| ||||||||||||||| |||||| |||| |||||| | |||| ||| |||| |
|
|
| T |
34142076 |
tcaaaccttttgaagagcttataaatgagcaaaacccttcaaaatataggccatataaatggggaaagtttcttgttcacagaaaagacagcaatatcaa |
34141977 |
T |
|
| Q |
104 |
gaaacaagatgaggagaatcttcaaatttatcattataagctac |
147 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34141976 |
gaaacaagatgtggagaatcttcaaatttatcattataagctac |
34141933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University