View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14480_high_19 (Length: 331)
Name: NF14480_high_19
Description: NF14480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14480_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 15 - 320
Target Start/End: Complemental strand, 22608781 - 22608476
Alignment:
| Q |
15 |
aataacacttattgatcaaggtgaaaacaagtttgtacgtggtgtaagacttgtctcagttgtgcacttattttggttttttgtcgatgcatagcgcaca |
114 |
Q |
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||||||||||||||||||||||||||||||||||| || | ||| |||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
22608781 |
aataacacttattgatcaaggtgaaaacaagtttgaacatcgtgcaagacttgtctcagttgtgcacttattttgtttgtttgtcgatgcatagcgcacg |
22608682 |
T |
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| Q |
115 |
cttgattaattgattttagcataggaaaagttgtaggttaaggaatgatctttcatgattaaactgatctaaaagttagttgaataaaaatcttgtctat |
214 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
22608681 |
cttgataaattgattttagcataggaaaagttgtaggttaaggaatgatcttccatgattaaactgagttaaaagttagttgaataaaaatcttgtctat |
22608582 |
T |
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| Q |
215 |
gaggtctcacttccatggtaagagtttgactttataacctaaagggacgaagttcaaatccccgatgagaaagttgtaaaatgttcattccattatttgt |
314 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
22608581 |
gaggtctcacttccgtggtaagagtttgactttataacctaaagggacgaagttcaaatccctgatgagaaagttgtaaaatgttcattccattatttgt |
22608482 |
T |
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| Q |
315 |
tatatt |
320 |
Q |
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|||||| |
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| T |
22608481 |
tatatt |
22608476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 56127417 - 56127370
Alignment:
| Q |
34 |
ggtgaaaacaagtttgtacgtggtgtaagacttgtctcagttgtgcac |
81 |
Q |
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| T |
56127417 |
ggtgaaaacaagtttgtgcatggtgcaagacttgtctcacttgtgcac |
56127370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 46851663 - 46851619
Alignment:
| Q |
35 |
gtgaaaacaagtttgtacgtggtgtaagacttgtctcagttgtgc |
79 |
Q |
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| T |
46851663 |
gtgaaaacaaatttgtacatgatgtaagacttgtctcatttgtgc |
46851619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 53028064 - 53028024
Alignment:
| Q |
233 |
taagagtttgactttataacctaaagggacgaagttcaaat |
273 |
Q |
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| T |
53028064 |
taagagtttgaccttataacctcaagggacaaagttcaaat |
53028024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 295
Target Start/End: Complemental strand, 12556936 - 12556871
Alignment:
| Q |
230 |
tggtaagagtttgactttataacctaaagggacgaagttcaaatccccgatgagaaagttgtaaaa |
295 |
Q |
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| T |
12556936 |
tggtaagagtttgactttgtaacatcaagagacgaagtttaaatcccatacgagatagttgtaaaa |
12556871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 32190547 - 32190510
Alignment:
| Q |
233 |
taagagtttgactttataacctaaagggacgaagttca |
270 |
Q |
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| T |
32190547 |
taagagtttgaccttataacctcaagggacgaagttca |
32190510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 276
Target Start/End: Original strand, 8715329 - 8715373
Alignment:
| Q |
232 |
gtaagagtttgactttataacctaaagggacgaagttcaaatccc |
276 |
Q |
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| T |
8715329 |
gtaaaagtttgactttataacttcaagggaggaagttcaaatccc |
8715373 |
T |
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