View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14480_high_2 (Length: 834)
Name: NF14480_high_2
Description: NF14480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14480_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 712; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 712; E-Value: 0
Query Start/End: Original strand, 10 - 807
Target Start/End: Complemental strand, 3652905 - 3652108
Alignment:
| Q |
10 |
aacaatattaagcgaccttctttgcctacattgtatttagaggaagcttttgaaatgtattgtaatggtttagttgggtttggcccattttggaataaca |
109 |
Q |
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| T |
3652905 |
aacaaaattaagccaccttctttgcctacattgaatttagaggaagcttttgaaatgtattgtaatggtttagttgggtttggcccattttggaatcaca |
3652806 |
T |
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| Q |
110 |
tgttaggttattggaatgagagcaaagagagaccaaaaaatgttcnnnnnnngaagtatgaggacatgaaagaagatttaaaatttcacttgnnnnnnnt |
209 |
Q |
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| T |
3652805 |
tgttaggttattggaatgagagcaaagagagaccaaaaaatgttctttttttgaagtatgaggacatgaaagaagatttaaaatttcacttgaaaaaaat |
3652706 |
T |
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| Q |
210 |
ggctgagtttttggattgtccttttacattggaggaggaaagtgagggtgtgattgaaaatataataaagttgtgtagttttgagaaaatgaaggggttg |
309 |
Q |
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| T |
3652705 |
ggctgagtttttggatcgtccttttacattggaggaggaaagtgagggtgtgattgaaaatataataaagttgtgtagttttgagaaaatgaaggggttg |
3652606 |
T |
|
| Q |
310 |
gagataaataagacaggaacatttggaaggagctttgagaataagttcttgtttagaaaaggtgaagttggtgattggagtaattatctttcaccttcaa |
409 |
Q |
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| T |
3652605 |
gagataaataatacaggaacatttggaaggaactttgagaataagttcttgtttagaaaaggtgaagttggtgattggagtaattatctttcaccttcaa |
3652506 |
T |
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| Q |
410 |
tggttgaaaaattgtccaaggtcattgaagagaagttaggtggatctgatctcaattttagagtgaaatagggttgcttcaactcctatgtttctctcct |
509 |
Q |
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| T |
3652505 |
tggttgaaaaattgtccaaggtcattgaagagaagttaggtggatctgatctcaattttagagtgaaatagggttgctacaactcctatgtttctctcct |
3652406 |
T |
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| Q |
510 |
aaactatgaagtcaacttatcactctatgaaataatgttgattaatagttaatcaagaatcaaaatatatatacaattgtgtttgtgttatgtgtaactc |
609 |
Q |
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| T |
3652405 |
aaactatgaagtcaacttatcactctatgaaataatgttgattaatagttaatcaagaatcaaaatatatatacaattgtgtttgtgttatgtgtaactc |
3652306 |
T |
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| Q |
610 |
aatgctataccactaattgtatagtggtgagcctcattatatactatgttatgttgcatttagctattttatttctatgcatgaatttcataaatggtgt |
709 |
Q |
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| T |
3652305 |
aatgctatacaactaattgtatagtggtgagcctcattatatactatgctatgttgcatttagctattttatttctatgcatgaatttcataaatggtgt |
3652206 |
T |
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| Q |
710 |
tgcaaatgttgttatggtatttccttttcataataaataataaaaaggttttatttgtaccctactactcttcgaccacatgtttaggttaatatata |
807 |
Q |
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| T |
3652205 |
tgcaaatgttgttatggtatttccttttcataataaataataaaaaggttttatttgtaccctactactcttggaccacatgtttaggttaatatata |
3652108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 214 - 457
Target Start/End: Complemental strand, 1626544 - 1626301
Alignment:
| Q |
214 |
gagtttttggattgtccttttacattggaggaggaaagtgagggtgtgattgaaaatataataaagttgtgtagttttgagaaaatgaaggggttggaga |
313 |
Q |
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| T |
1626544 |
gagtttttgggttgtccttttactcaagaggaagaaagtaatggtgtgattgaaaatataatcaatttatgtagctttgaaaagatgaaaggattggaag |
1626445 |
T |
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| Q |
314 |
taaataagacaggaacatttggaaggagctttgagaataagttcttgtttagaaaaggtgaagttggtgattggagtaattatctttcaccttcaatggt |
413 |
Q |
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| T |
1626444 |
caaataaatctggagtcttgggaaagatttatgacaaaaagtacttctttcgaaagggagaaataggggattggattaattatctttctccttcaatggt |
1626345 |
T |
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| Q |
414 |
tgaaaaattgtccaaggtcattgaagagaagttaggtggatctg |
457 |
Q |
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| T |
1626344 |
agataagttatccaaaatcatagaagaaaaattaagtggatctg |
1626301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 293
Target Start/End: Complemental strand, 1617994 - 1617915
Alignment:
| Q |
214 |
gagtttttggattgtccttttacattggaggaggaaagtgagggtgtgattgaaaatataataaagttgtgtagttttga |
293 |
Q |
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| T |
1617994 |
gagtttttgggttgtccttttactcaagaggaggaaagtaatggtgtgattgaaaatattatcaatttatgtagctttga |
1617915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 342 - 453
Target Start/End: Complemental strand, 4506242 - 4506131
Alignment:
| Q |
342 |
ctttgagaataagttcttgtttagaaaaggtgaagttggtgattggagtaattatctttcaccttcaatggttgaaaaattgtccaaggtcattgaagag |
441 |
Q |
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| T |
4506242 |
ctttgagaacaagttcttctttagaaaggcagaagtaggagattggataaattatctttctccttgaatggaagaaaaactatccaaaatcatagaagaa |
4506143 |
T |
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| Q |
442 |
aagttaggtgga |
453 |
Q |
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| T |
4506142 |
aagttaagtgga |
4506131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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