View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14480_high_20 (Length: 322)
Name: NF14480_high_20
Description: NF14480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14480_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 42666370 - 42666182
Alignment:
| Q |
18 |
aacacagcaaagctgagaagtcttaagtaaaattagtgtaatatacaagggaagttaaaggttttatttgaaatctcaagtaagattcaatccaaat--- |
114 |
Q |
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| T |
42666370 |
aacacagcaaagctgagaagtcttgagtaaaattagtgtaatatacaagggaagttaaaggttttatttgaaatctcaagtaagattcaatccaaatgtt |
42666271 |
T |
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| Q |
115 |
-gttccatttggagaagagtatagaatcctcaataggacaatactttgtattagtttattttcttctaacaaagttgattatgttgtca |
202 |
Q |
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| T |
42666270 |
cgttccatttggagaagagtatagaatcctcaataggacaatactttgtattagtttattttcttctaataaagttgattatgttgtca |
42666182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 210 - 322
Target Start/End: Complemental strand, 42666150 - 42666038
Alignment:
| Q |
210 |
tcaaacggaattataccaacttttgtacaagaaatttataagatgtaaaatgtgggaaaaaagtacttctgctgttgtactttgtttggcttccagatca |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42666150 |
tcaaacggaattataccaacttttgtacaagaaatttataagatgtaaaatgtgggaaaaaagtacttctgctgttgtactttgtttggctgccagatca |
42666051 |
T |
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| Q |
310 |
atctataattctt |
322 |
Q |
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|||| |||||||| |
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| T |
42666050 |
atctttaattctt |
42666038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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