View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14480_high_21 (Length: 298)
Name: NF14480_high_21
Description: NF14480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14480_high_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 107 - 282
Target Start/End: Original strand, 56166680 - 56166840
Alignment:
| Q |
107 |
attattgtgtgcttattatcgaatcctctctcatcatcccctcctgcaattaaccaagcgatacagctagctagctaattcccaaactccattcaaacaa |
206 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
56166680 |
attattgtgtgcttat---cgaatcctctctcatcatcccctcctgcaattaaccaagcgataccgcta--------attcccaaactccattcaaa--- |
56166765 |
T |
|
| Q |
207 |
acaccatgaaaagatccaccgatgaattggcccccgtccccgccaccgctatccccaaaccagttttcctcactaa |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56166766 |
-caccatgaaaagatccaccgatgaattggcccccgtccccgccaccgctatccccaaaccagttttcctcactaa |
56166840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 77
Target Start/End: Original strand, 56166577 - 56166608
Alignment:
| Q |
46 |
gagggggtgtattagaaacagtagttgggccc |
77 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
56166577 |
gagggggtgtattagaaacagtagttgggccc |
56166608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 56166527 - 56166560
Alignment:
| Q |
11 |
ataatatccttatgaaacaagttaaacttaaaaa |
44 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
|
|
| T |
56166527 |
ataatatccttatgaaacaagttaaaattaaaaa |
56166560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University