View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14480_high_29 (Length: 255)
Name: NF14480_high_29
Description: NF14480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14480_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 25288018 - 25287793
Alignment:
| Q |
19 |
gtttagtggttaaggtataattagttattgttgcagcacttttgatggaaaagaaatttgattccatttttgttctataggcttctgaatatgctaaaag |
118 |
Q |
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| T |
25288018 |
gtttagtggttaaggtataattagttattgttgtagcacttttgatggaaaagaaatttgattccatttttgttctataggcttctgaatatgctaaaag |
25287919 |
T |
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| Q |
119 |
gttggttaatcaagagaagtcttttgcttgtgccgaagtcgagagtactagagcagtggtgctgagaattggggaggcacttgaagaacaagaaaaagtt |
218 |
Q |
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| T |
25287918 |
gttggttaatcaagagaagtcttttgcttgtgctgaagtcgagagtactagagcagtggtgctgagaattggggaggcacttgaagaacaagaaaaagat |
25287819 |
T |
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| Q |
219 |
acacaagcttctaaaccacaggttct |
244 |
Q |
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|||||||||||||||||||||||||| |
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| T |
25287818 |
acacaagcttctaaaccacaggttct |
25287793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 69 - 244
Target Start/End: Complemental strand, 34814032 - 34813857
Alignment:
| Q |
69 |
aagaaatttgattccatttttgttctataggcttctgaatatgctaaaaggttggttaatcaagagaagtcttttgcttgtgccgaagtcgagagtacta |
168 |
Q |
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| T |
34814032 |
aagatatttgatcccatctttgttcaataggcttctgaagatgctaaaaagttggttaatcaagagaagtcttttgcttgtgccgaaatcgagagtgcta |
34813933 |
T |
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| Q |
169 |
gagcagtggtgctgagaattggggaggcacttgaagaacaagaaaaagttacacaagcttctaaaccacaggttct |
244 |
Q |
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| T |
34813932 |
gagcagtggtgctgagaattggggaggcacttgaggaacaagaaaaagttacagaagcttctaaaccacaggttct |
34813857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 67 - 233
Target Start/End: Original strand, 29736614 - 29736777
Alignment:
| Q |
67 |
aaaagaaatttgattccatttttgttctataggcttctgaatatgctaaaaggttggttaatcaagagaagtcttttgcttgtgccgaagtcgagagtac |
166 |
Q |
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||||||||| ||||||||| ||||| ||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||| |||||| | | |
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| T |
29736614 |
aaaagaaatgtgattccatctttgtgctataggcttctgaagatgctaaaaagttggttaatcaagagcagtcttttgcttgtgccgaaatcgagaatgc |
29736713 |
T |
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| Q |
167 |
tagagcagtggtgctgagaattggggaggcacttgaagaacaagaaaaagttacacaagcttctaaa |
233 |
Q |
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| T |
29736714 |
tagagcagtggtgctgagatttggggaggcacttgaag---aagaaaaagttacacaagcttctaaa |
29736777 |
T |
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