View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14480_high_3 (Length: 665)

Name: NF14480_high_3
Description: NF14480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14480_high_3
NF14480_high_3
[»] chr5 (13 HSPs)
chr5 (11-649)||(38155441-38156078)
chr5 (23-244)||(38443359-38443580)
chr5 (62-244)||(38215530-38215712)
chr5 (62-244)||(38182644-38182826)
chr5 (62-244)||(38188305-38188487)
chr5 (62-244)||(38209870-38210052)
chr5 (62-244)||(38169774-38169956)
chr5 (62-244)||(38185563-38185745)
chr5 (62-244)||(38212612-38212794)
chr5 (69-244)||(38452961-38453136)
chr5 (61-183)||(38219953-38220075)
chr5 (378-432)||(38170955-38171007)
chr5 (455-497)||(8177250-8177292)
[»] chr7 (1 HSPs)
chr7 (471-500)||(27378836-27378865)
[»] chr4 (1 HSPs)
chr4 (455-500)||(25319910-25319955)
[»] chr2 (1 HSPs)
chr2 (473-501)||(45314900-45314928)
[»] chr1 (1 HSPs)
chr1 (472-500)||(11129341-11129369)


Alignment Details
Target: chr5 (Bit Score: 478; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 11 - 649
Target Start/End: Complemental strand, 38156078 - 38155441
Alignment:
Q  11 atgaacggaaatattgagcgagtcgatggacaactgtttgagattgatagtggaagccaaagaattaaaagatgtcttgttgttgttaatagggacaagg 110  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| | ||    
T  38156078 atgaatggaaatattgagcgagtcgacggacaactgtttgagattgatagtggaagccaaagaattaaaagatgccttgttgttgctaatagggagaggg 38155979  T
Q  111 aagaggaagaccctcaaccttgcaggctttcgtgaaaagcaacatatacgattgttcacgaacatcatatgatcaagatcttcttcgttataaaccggaa 210  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  38155978 aagaggaagaccctcaactttgcaggctttcgtgaaaagcaacataaacgatcgttctcgaacatcatatgatcaagatcttcttcgttataaaccggaa 38155879  T
Q  211 tcaaagcatcgagatcttcaccaaggagttgatatatgctaaaatctatggaactgtttcattcacaaccctatatgctaaaatctttatcctaccctga 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38155878 tcaaagcatcgagatcttcaccaaggagttgatatatgctaaaatctatggaactgtttcattcacaaccctatatgctaaaatctttatcctaccctga 38155779  T
Q  311 ataatctatttgttcattgcttatcnnnnnnnnnnnntataatctatttgttcaatctaaattagtttgttcaactgttgataataaggctgtagggaat 410  Q
    |||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38155778 ataatctatttgttcattgcttatcaaaaaagaaaaatataatctatttgttcaatctaaattagtttgttcaactgttgataataaggctgtagggaat 38155679  T
Q  411 gacacatatttgagttgatatagtgacataaccactcgtacgattgtttgagagagcttatcataagttgttttcagtttattttcataaagctctctac 510  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  38155678 gacacatatttgagttgatatagtgacataaccactcgtacgattgtttgagagagcttatcataagttgttttcagtttattttcataaagctctctaa 38155579  T
Q  511 ctttta-nnnnnnngacagaagaaagctctctaacttatgtgacaacaatctgtctttattttatccagttatagaaatagcnnnnnnnnnnnngctata 609  Q
    ||||||        ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||            ||||||    
T  38155578 cttttattttttttgacagaagaaagctctctaacttatgtgacaacaatctgcctttattttatccagttatagaaatagc--atatatatatgctata 38155481  T
Q  610 cctgtttaaactataagccccaaattaagatggttatcca 649  Q
    ||||||||||||||||||||||||||||| ||| ||||||    
T  38155480 cctgtttaaactataagccccaaattaagctggatatcca 38155441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 23 - 244
Target Start/End: Complemental strand, 38443580 - 38443359
Alignment:
Q  23 attgagcgagtcgatggacaactgtttgagattgatagtggaagccaaagaattaaaagatgtcttgttgttgttaatagggacaaggaagaggaagacc 122  Q
    ||||||||||| || ||| || |||||||| |||||||  ||||||||||||| |||||||| |||||||||||||| ||||||| ||||||||||||||    
T  38443580 attgagcgagttgacggaaaattgtttgagcttgatagcagaagccaaagaatcaaaagatgccttgttgttgttaacagggacagggaagaggaagacc 38443481  T
Q  123 ctcaaccttgcaggctttcgtgaaaagcaacatatacgattgttcacgaacatcatatgatcaagatcttcttcgttataaaccggaatcaaagcatcga 222  Q
    ||||||| |||||||||||||||||||  ||| |||||||  | | |||||||||||||||  |||||||||||||||||||| || ||||||||||| |    
T  38443480 ctcaaccatgcaggctttcgtgaaaagtgacacatacgatcatactcgaacatcatatgattgagatcttcttcgttataaactgggatcaaagcatcaa 38443381  T
Q  223 gatcttcaccaaggagttgata 244  Q
     |||||||||||||||||||||    
T  38443380 aatcttcaccaaggagttgata 38443359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 62 - 244
Target Start/End: Complemental strand, 38215712 - 38215530
Alignment:
Q  62 ggaagccaaagaattaaaagatgtcttgttgttgttaatagggacaaggaagaggaagaccctcaaccttgcaggctttcgtgaaaagcaacatatacga 161  Q
    |||||||||||||| |||||||| |||||||||||||||||||||  ||||||||||||||||||||| |||||||||| ||||||||| ||| ||||||    
T  38215712 ggaagccaaagaatcaaaagatgccttgttgttgttaatagggaccgggaagaggaagaccctcaaccatgcaggcttttgtgaaaagcgacacatacga 38215613  T
Q  162 ttgttcacgaacatcatatgatcaagatcttcttcgttataaaccggaatcaaagcatcgagatcttcaccaaggagttgata 244  Q
    |  | | |||||||||||||||  |||||||||||||||||||| || ||||||||||| | |||||||||||||||||||||    
T  38215612 tcatactcgaacatcatatgattgagatcttcttcgttataaactgggatcaaagcatccaaatcttcaccaaggagttgata 38215530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 62 - 244
Target Start/End: Original strand, 38182644 - 38182826
Alignment:
Q  62 ggaagccaaagaattaaaagatgtcttgttgttgttaatagggacaaggaagaggaagaccctcaaccttgcaggctttcgtgaaaagcaacatatacga 161  Q
    |||||||||||||| |||||||| |||||||||||||||||||||  ||||||||||||||||||||| |||||||||| ||||||||| ||| ||||||    
T  38182644 ggaagccaaagaatcaaaagatgccttgttgttgttaatagggaccgggaagaggaagaccctcaaccatgcaggcttttgtgaaaagcgacacatacga 38182743  T
Q  162 ttgttcacgaacatcatatgatcaagatcttcttcgttataaaccggaatcaaagcatcgagatcttcaccaaggagttgata 244  Q
    |  | | |||||||||||||||  |||||||||||||||||||| || ||||||||||| | |||||||||||| ||||||||    
T  38182744 tcatactcgaacatcatatgattgagatcttcttcgttataaactgggatcaaagcatccaaatcttcaccaagtagttgata 38182826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 62 - 244
Target Start/End: Complemental strand, 38188487 - 38188305
Alignment:
Q  62 ggaagccaaagaattaaaagatgtcttgttgttgttaatagggacaaggaagaggaagaccctcaaccttgcaggctttcgtgaaaagcaacatatacga 161  Q
    |||||||||||||| |||||||| |||||||||||||||||||||  ||||||||||||||||||||| |||||||||| ||||||||| ||| ||||||    
T  38188487 ggaagccaaagaatcaaaagatgccttgttgttgttaatagggaccgggaagaggaagaccctcaaccatgcaggcttttgtgaaaagcgacacatacga 38188388  T
Q  162 ttgttcacgaacatcatatgatcaagatcttcttcgttataaaccggaatcaaagcatcgagatcttcaccaaggagttgata 244  Q
    |  | | |||||||||||||||  |||||||||||||||||||| || ||||||||||| | |||||||||||| ||||||||    
T  38188387 tcatactcgaacatcatatgattgagatcttcttcgttataaactgggatcaaagcatccaaatcttcaccaagtagttgata 38188305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 62 - 244
Target Start/End: Original strand, 38209870 - 38210052
Alignment:
Q  62 ggaagccaaagaattaaaagatgtcttgttgttgttaatagggacaaggaagaggaagaccctcaaccttgcaggctttcgtgaaaagcaacatatacga 161  Q
    |||||||||||||| |||||||| |||||||||||||||||||||  ||||||||||||||||||||| |||||||||| ||||||||| ||| ||||||    
T  38209870 ggaagccaaagaatcaaaagatgccttgttgttgttaatagggaccgggaagaggaagaccctcaaccatgcaggcttttgtgaaaagcgacacatacga 38209969  T
Q  162 ttgttcacgaacatcatatgatcaagatcttcttcgttataaaccggaatcaaagcatcgagatcttcaccaaggagttgata 244  Q
    |  | | |||||||||||||||  |||||||||||||||||||| || ||||||||||| | |||||||||||| ||||||||    
T  38209970 tcatactcgaacatcatatgattgagatcttcttcgttataaactgggatcaaagcatccaaatcttcaccaagtagttgata 38210052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 62 - 244
Target Start/End: Complemental strand, 38169956 - 38169774
Alignment:
Q  62 ggaagccaaagaattaaaagatgtcttgttgttgttaatagggacaaggaagaggaagaccctcaaccttgcaggctttcgtgaaaagcaacatatacga 161  Q
    |||||||||||||| |||||||| |||||||||||||||||||||  |||||||||||||||||| || |||||||||||||||||||  ||| ||||||    
T  38169956 ggaagccaaagaatcaaaagatgccttgttgttgttaatagggaccgggaagaggaagaccctcagccatgcaggctttcgtgaaaagtgacacatacga 38169857  T
Q  162 ttgttcacgaacatcatatgatcaagatcttcttcgttataaaccggaatcaaagcatcgagatcttcaccaaggagttgata 244  Q
    |  | | ||||||| |||||||  |||||||||||||||||||  || ||||||||||||| |||||||||||||||||||||    
T  38169856 tcatactcgaacataatatgattgagatcttcttcgttataaattgggatcaaagcatcgaaatcttcaccaaggagttgata 38169774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 62 - 244
Target Start/End: Complemental strand, 38185745 - 38185563
Alignment:
Q  62 ggaagccaaagaattaaaagatgtcttgttgttgttaatagggacaaggaagaggaagaccctcaaccttgcaggctttcgtgaaaagcaacatatacga 161  Q
    |||||||||||||| |||||||| |||||||||||||||||||||  ||||||||||||| ||||||| |||||||||| ||||||||| ||| ||||||    
T  38185745 ggaagccaaagaatcaaaagatgccttgttgttgttaatagggaccgggaagaggaagactctcaaccatgcaggcttttgtgaaaagcgacacatacga 38185646  T
Q  162 ttgttcacgaacatcatatgatcaagatcttcttcgttataaaccggaatcaaagcatcgagatcttcaccaaggagttgata 244  Q
    |  | | |||||||||||||||  |||||||||||||||||||| || ||||||||||| | |||||||||||| ||||||||    
T  38185645 tcatactcgaacatcatatgattgagatcttcttcgttataaactgggatcaaagcatccaaatcttcaccaagtagttgata 38185563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 62 - 244
Target Start/End: Original strand, 38212612 - 38212794
Alignment:
Q  62 ggaagccaaagaattaaaagatgtcttgttgttgttaatagggacaaggaagaggaagaccctcaaccttgcaggctttcgtgaaaagcaacatatacga 161  Q
    |||||||||||||| |||||||| |||||||||||||||||||||  ||||||||||||| ||||||| |||||||||| ||||||||| ||| ||||||    
T  38212612 ggaagccaaagaatcaaaagatgccttgttgttgttaatagggaccgggaagaggaagactctcaaccatgcaggcttttgtgaaaagcgacacatacga 38212711  T
Q  162 ttgttcacgaacatcatatgatcaagatcttcttcgttataaaccggaatcaaagcatcgagatcttcaccaaggagttgata 244  Q
    |  | | |||||||||||||||  |||||||||||||||||||| || ||||||||||| | |||||||||||| ||||||||    
T  38212712 tcatactcgaacatcatatgattgagatcttcttcgttataaactgggatcaaagcatccaaatcttcaccaagtagttgata 38212794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 69 - 244
Target Start/End: Original strand, 38452961 - 38453136
Alignment:
Q  69 aaagaattaaaagatgtcttgttgttgttaatagggacaaggaagaggaagaccctcaaccttgcaggctttcgtgaaaagcaacatatacgattgttca 168  Q
    ||||||| |||||||| |||||||||||||| | ||||| ||||||||||||||||||||| |||||||||||||||||||  ||| ||| |||  | |     
T  38452961 aaagaatcaaaagatgccttgttgttgttaacaaggacagggaagaggaagaccctcaaccatgcaggctttcgtgaaaagtgacacatatgatcatact 38453060  T
Q  169 cgaacatcatatgatcaagatcttcttcgttataaaccggaatcaaagcatcgagatcttcaccaaggagttgata 244  Q
    | |||||||||||||  ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  38453061 ctaacatcatatgattgagatcttcttcgttataaaccgggatcaaagcatcgaaatcttcaccaaggagttgata 38453136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 61 - 183
Target Start/End: Complemental strand, 38220075 - 38219953
Alignment:
Q  61 tggaagccaaagaattaaaagatgtcttgttgttgttaatagggacaaggaagaggaagaccctcaaccttgcaggctttcgtgaaaagcaacatatacg 160  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||| ||| |||||    
T  38220075 tggaagccaaagaatcaaaagatgccttgttgttgttaatagggaccgggaagaggaagaccctcaaccatgcaggctttcgtgaaaagcgacacatacg 38219976  T
Q  161 attgttcacgaacatcatatgat 183  Q
    ||  | | |||||||||||||||    
T  38219975 atcatactcgaacatcatatgat 38219953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 378 - 432
Target Start/End: Complemental strand, 38171007 - 38170955
Alignment:
Q  378 tgttcaactgttgataataaggctgtagggaatgacacatatttgagttgatata 432  Q
    ||||||| ||||||||||||| ||||||||||||  ||||||||||||| |||||    
T  38171007 tgttcaattgttgataataagactgtagggaatg--acatatttgagtttatata 38170955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 455 - 497
Target Start/End: Original strand, 8177250 - 8177292
Alignment:
Q  455 tgtttgagagagcttatcataagttgttttcagtttattttca 497  Q
    ||||||||||||||| ||||||| ||| |||||||||||||||    
T  8177250 tgtttgagagagcttgtcataagctgtcttcagtttattttca 8177292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 500
Target Start/End: Original strand, 27378836 - 27378865
Alignment:
Q  471 tcataagttgttttcagtttattttcataa 500  Q
    ||||||||||||||||||||||||||||||    
T  27378836 tcataagttgttttcagtttattttcataa 27378865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 500
Target Start/End: Complemental strand, 25319955 - 25319910
Alignment:
Q  455 tgtttgagagagcttatcataagttgttttcagtttattttcataa 500  Q
    |||||||||||| |||||||||||||||||||| | ||||| ||||    
T  25319955 tgtttgagagagtttatcataagttgttttcagctaattttgataa 25319910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 473 - 501
Target Start/End: Complemental strand, 45314928 - 45314900
Alignment:
Q  473 ataagttgttttcagtttattttcataaa 501  Q
    |||||||||||||||||||||||||||||    
T  45314928 ataagttgttttcagtttattttcataaa 45314900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 472 - 500
Target Start/End: Complemental strand, 11129369 - 11129341
Alignment:
Q  472 cataagttgttttcagtttattttcataa 500  Q
    |||||||||||||||||||||||||||||    
T  11129369 cataagttgttttcagtttattttcataa 11129341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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