View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14480_high_4 (Length: 655)
Name: NF14480_high_4
Description: NF14480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14480_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 195 - 637
Target Start/End: Complemental strand, 35406935 - 35406493
Alignment:
| Q |
195 |
cactccttgacttggggaacaaagaatggcaaattgaaacattttcaacaattgataaatgctttacttgctcaggtaatctaggaaaatgggatttaac |
294 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35406935 |
cactccttgacttggggaacaaagaatgggaaattgaaacattttcaacaattgataaatgctttacttgctcaggtaatctaagaaaatgggatttaac |
35406836 |
T |
|
| Q |
295 |
tgctacaaactcctcttttgcaacatagcgagcaagatatatcatgaaccaaatcatgtactttgaactagatttggaggtttgtcttctttgtcttcct |
394 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35406835 |
tgctacaaactcctcttttgcaacatagagagcaagatatatcatgcaccaaatcatgtactttgaactagatttggaggtttgtcttcttcgtcttcct |
35406736 |
T |
|
| Q |
395 |
tgaatacccatttctcaaacagagattagcaattttctatagaaaggctttttaaaacataggacggaacaatgcccatcatcaatgcaattgaattgct |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35406735 |
tgaatacccatttctcaaacagagattagcaattttctatagaaaggctttttaaaacataggacggaacaatgcccatcatcaatgcaattgaattgct |
35406636 |
T |
|
| Q |
495 |
gcatattgtcgccatgatcttgcttcccaatgtgctaacttttatcaaatatgtcaactcaatccattttacactatcatctaacacaagtaaaaacttt |
594 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35406635 |
gcattttgtcgccatgatcttgcttcccaatgtgctaacttttatcaaatatgtcaactcaatccattttacactatcatctaacactagtaaaaacttt |
35406536 |
T |
|
| Q |
595 |
ttaccatatagtttacgtctcagacgactttgtagttgcaact |
637 |
Q |
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| T |
35406535 |
ttaccatatagtttacgtctcagacgactttgtagttgcaact |
35406493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 35407161 - 35406960
Alignment:
| Q |
1 |
taattctcgaaggctgatcagcttgcctaaccatttaggcagtgtttcaatatccaatccatgcatccattgagtnnnnnnncttgcacataagtattct |
100 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
35407161 |
taattctcaaaggctgatcagcttgcctaaccatttaggcagtgtttcaatatccaatccatgcatccattgagtaaacaaacttccacataagtattct |
35407062 |
T |
|
| Q |
101 |
aatttagcaattgatcaattaagtagagtctcaaacagagaatttcttaaatctaaaacttgcatgtatttaaaagagtttcactatcaagactcactcc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35407061 |
aatttagcaattgatcaattaagtagagtctcaaacatagaatttcttaaatctaaaacttgcatgtatttaaaaaagtttcactatcaagactcactcc |
35406962 |
T |
|
| Q |
201 |
tt |
202 |
Q |
| |
|
|| |
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|
| T |
35406961 |
tt |
35406960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 4e-58; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 360 - 629
Target Start/End: Original strand, 18117767 - 18118051
Alignment:
| Q |
360 |
aactagatttggaggtttgtcttctttgtcttccttgaatacccatttctcaaacagagattagcaattttctatagaaaggctttttaaaacataggac |
459 |
Q |
| |
|
||||||||||||| ||||||||||| | ||||||||||| |||||||| |||||| |||| | || ||||| |||||||||| ||||||||||||||| |
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| T |
18117767 |
aactagatttggatatttgtcttcttcgccttccttgaatgcccatttcacaaacaaagataaacagttttcaatagaaaggccttttaaaacataggag |
18117866 |
T |
|
| Q |
460 |
ggaacaatgcccatcatcaatgcaattgaattgctgcatattgtcgccatgatcttgcttcccaatgtgctaacttttatcaaatatgtcaactcaatcc |
559 |
Q |
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|||||| | ||||||||| |||||||||| ||||||| | |||||||||||| |||||||| | ||||| |||||| ||||||| | ||||||| |||| |
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| T |
18117867 |
ggaacagtacccatcatcgatgcaattgagttgctgcgtgttgtcgccatgactttgcttcctactgtgccaactttaatcaaatctttcaactcgatcc |
18117966 |
T |
|
| Q |
560 |
attttacac---------------tatcatctaacacaagtaaaaactttttaccatatagtttacgtctcagacgactttgtag |
629 |
Q |
| |
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||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
18117967 |
attttacacaatcatcattccatatatcatctaacacaagtaaaaaccttttaccataaagtttacgtctcagacgactttgtag |
18118051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 195 - 363
Target Start/End: Original strand, 18117202 - 18117366
Alignment:
| Q |
195 |
cactccttgacttggggaacaaagaatggcaaattgaaacattttcaacaattgataaatgctttacttgctcaggtaatctaggaaaatgggatttaac |
294 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||| |
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| T |
18117202 |
cactccttgacttggggaacaaagaatcgcaaattgaaacattttcaacaattgataaatgctttactcgctcaggtaatctaagaatgtgggatttaac |
18117301 |
T |
|
| Q |
295 |
tgctacaaactcctcttttgcaacatagcgagcaagatatatcatgaaccaaatcatgtactttgaact |
363 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||| |||||| |||||||| ||||||||||||| |
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| T |
18117302 |
cactacaaactccttttttgcaacatagaaagcaag----atcatgtaccaaatcgtgtactttgaact |
18117366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 18132940 - 18132985
Alignment:
| Q |
5 |
tctcgaaggctgatcagcttgcctaaccatttaggcagtgtttcaa |
50 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
18132940 |
tctcgaaggctgatcagcttgcctaaccctttaggcagtgtttcaa |
18132985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 18124860 - 18124932
Alignment:
| Q |
200 |
cttgacttggggaacaaagaatggcaaattgaaacattttcaacaattgataaatgctttacttgctcaggta |
272 |
Q |
| |
|
|||||||||||||| |||| ||||| || |||| |||||||||||||||||||||| ||||||||||||| |
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| T |
18124860 |
cttgacttggggaataaagtatggccaagtgaatcattttcaacaattgataaatgtcgcacttgctcaggta |
18124932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 18116902 - 18116943
Alignment:
| Q |
9 |
gaaggctgatcagcttgcctaaccatttaggcagtgtttcaa |
50 |
Q |
| |
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|||||||||||||||||||||||| |||||||| |||||||| |
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| T |
18116902 |
gaaggctgatcagcttgcctaaccctttaggcaatgtttcaa |
18116943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 97 - 171
Target Start/End: Original strand, 18117053 - 18117124
Alignment:
| Q |
97 |
ttctaatttagcaattgatcaattaagtagagtctcaaacagagaatttcttaaatctaaaacttgcatgtattt |
171 |
Q |
| |
|
||||||| |||||||||| |||| |||||||||| | | |||||||||||||||||||||| ||| |||||| |
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|
| T |
18117053 |
ttctaatgtagcaattga---attaggtagagtctcgatcgaagaatttcttaaatctaaaactcgcaagtattt |
18117124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 36223736 - 36223683
Alignment:
| Q |
203 |
gacttggggaacaaagaatggcaaattgaaacattttcaacaattgataaatgc |
256 |
Q |
| |
|
||||||||||||||| ||||| || |||| |||||||||||||||||| |||| |
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|
| T |
36223736 |
gacttggggaacaaatcatggccaagtgaaccattttcaacaattgatatatgc |
36223683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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