View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14480_high_5 (Length: 643)
Name: NF14480_high_5
Description: NF14480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14480_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-163; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 297 - 634
Target Start/End: Complemental strand, 27304070 - 27303731
Alignment:
| Q |
297 |
gttaggggggtaaataaaataaaacgatgaagaaacggcaatggacgagagaagaagagaacaaaggggtttaaatagatcaacagtgcgtaaaacccta |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27304070 |
gttaggggggtaaataaaataaaacgatgaagaaacggcaatggacgagagaagaagagaacaaaggggtttaaatagatcaacagtgcgtaaaacccta |
27303971 |
T |
|
| Q |
397 |
attcgctgctactgatattacggtattatcctttcttctttttgggccttttagcccatatatgatttcctcaaatacta-tcttattttcgttggttat |
495 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
27303970 |
atttgttgctactgatattacggtattatcctttcttctttttgggccttttagcccatatatgatttcctcaaatactagtctaattttcgttggttat |
27303871 |
T |
|
| Q |
496 |
tgctaccaccacacccatattttcctactcataactcaaactaacgttagagtga-ttatttgtcgttgctctagtttagttattcagaacaaaataggc |
594 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | || ||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
27303870 |
tgctaccaccacacccatattttcctactcataactcaaactaatgctaaagtgatttatttgtcgttgatctagtttagttattcagaacaaaataggc |
27303771 |
T |
|
| Q |
595 |
cgcattggtcctttataactttaggaggatattagaataa |
634 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27303770 |
cgcattggtcctttgtaactttaggaggatattagaataa |
27303731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 27304324 - 27304078
Alignment:
| Q |
18 |
aaattatcatcatgcgtaaaacccaggttcacaccatttaattatccaatcaactagact-----------gaattgcaaaagggtacaagaaatgttta |
106 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||| ||||||||| ||||| |||| |||||||| ||||||||||||| |
|
|
| T |
27304324 |
aaattatcatcatgcgtaaaaaccaggttcaaaccatttaattaaccaatcaacgagactaaagttcatctgaatcgcaaaaggc-acaagaaatgtttt |
27304226 |
T |
|
| Q |
107 |
gtttcaaacttccagattaagatcatttaaaac-cttgatcataaacccaaggatcactggttctaacatagtatctcca-atatagaacatagtgaaat |
204 |
Q |
| |
|
|||||| ||| |||||| ||||||||||||||| |||| ||||||||||| ||| | ||| ||||| ||| || ||||||||||||||| ||| |
|
|
| T |
27304225 |
gtttcagactgccagatcaagatcatttaaaacacttgttcataaacccatatatccc-----cta-cataggatcgcctcatatagaacatagtggaat |
27304132 |
T |
|
| Q |
205 |
ctggacctacaaataagagtattaattgatattgaactggaagagaaacatgttg |
259 |
Q |
| |
|
||| || ||| ||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27304131 |
ctg-acttacgaataagagtattaattgatattgaagtggaagagaaacatgttg |
27304078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 216 - 259
Target Start/End: Complemental strand, 27298477 - 27298434
Alignment:
| Q |
216 |
aataagagtattaattgatattgaactggaagagaaacatgttg |
259 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27298477 |
aataagagtattaattgatgttgaactggaagagaaacatgttg |
27298434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University