View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14480_high_7 (Length: 620)

Name: NF14480_high_7
Description: NF14480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14480_high_7
NF14480_high_7
[»] chr2 (4 HSPs)
chr2 (1-456)||(26568305-26568768)
chr2 (326-427)||(5900521-5900622)
chr2 (358-411)||(43633442-43633495)
chr2 (368-426)||(2341338-2341396)
[»] chr1 (11 HSPs)
chr1 (280-538)||(43014287-43014543)
chr1 (279-424)||(45316372-45316516)
chr1 (280-422)||(45151994-45152136)
chr1 (279-423)||(42202350-42202493)
chr1 (279-423)||(42211218-42211361)
chr1 (320-423)||(10542392-10542495)
chr1 (279-423)||(42409597-42409740)
chr1 (320-428)||(2176317-2176425)
chr1 (360-420)||(42217273-42217333)
chr1 (364-423)||(42417641-42417700)
chr1 (366-422)||(51795018-51795074)
[»] chr4 (6 HSPs)
chr4 (275-499)||(17889347-17889570)
chr4 (326-427)||(49588161-49588262)
chr4 (322-423)||(36790835-36790936)
chr4 (321-428)||(25698803-25698910)
chr4 (369-404)||(20918690-20918725)
chr4 (364-403)||(46362544-46362583)
[»] chr3 (3 HSPs)
chr3 (320-427)||(21884057-21884164)
chr3 (280-427)||(35717163-35717311)
chr3 (360-420)||(46446217-46446277)
[»] chr8 (5 HSPs)
chr8 (279-427)||(31555089-31555237)
chr8 (279-427)||(31878232-31878380)
chr8 (296-420)||(31558191-31558315)
chr8 (320-424)||(4042200-4042304)
chr8 (369-416)||(13568429-13568476)
[»] chr5 (13 HSPs)
chr5 (278-425)||(10109299-10109446)
chr5 (295-427)||(10209709-10209841)
chr5 (296-423)||(10105888-10106015)
chr5 (296-422)||(10102805-10102931)
chr5 (320-422)||(10212285-10212387)
chr5 (354-423)||(13856016-13856085)
chr5 (351-423)||(12109382-12109454)
chr5 (368-422)||(37278735-37278789)
chr5 (360-417)||(9674763-9674820)
chr5 (371-420)||(12104608-12104657)
chr5 (364-424)||(3467667-3467727)
chr5 (359-420)||(9660279-9660340)
chr5 (359-420)||(10215923-10215984)
[»] chr7 (6 HSPs)
chr7 (295-426)||(3647023-3647154)
chr7 (275-426)||(3649472-3649623)
chr7 (275-414)||(3657601-3657740)
chr7 (365-418)||(3641211-3641264)
chr7 (358-404)||(19523282-19523328)
chr7 (371-413)||(33270836-33270878)
[»] chr6 (2 HSPs)
chr6 (322-428)||(33891587-33891693)
chr6 (368-422)||(27868671-27868725)


Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Complemental strand, 26568768 - 26568305
Alignment:
Q  1 atcctatgaagcactgatacggtctttaatttaattatgtgttcgtgtcggatacgtatcacgcctaatctgaggagtgtccgtactt----gctctaat 96  Q
    |||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||| ||||||||| ||     ||||||||    
T  26568768 atcctatgaagcactgatacggtctttaatgtaattatgtgtcggtgtcggatacgtatcacgcctaatctgagaagtgtccgtgctacatagctctaat 26568669  T
Q  97 ccttacgaacaaaattgtagttaaccaagagtaacagagatttgaaaatcagtagaatctaactttaataaagtcctagatggaaattatattaacttag 196  Q
    |||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26568668 cctttcgaacaaaattatagttaaccaagagtaacatagatttgaaaatcagtagaatctaactttaataaagtcctagatggaaattatattaacttag 26568569  T
Q  197 ttttctatccttgagtacaactttattccctatcaaccaataagactaaactacaacaagcca----attcccatcctactcaaataaaaatttaaactg 292  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    |||||||||||||||||||||||||||||||||    
T  26568568 ttttctatccttgagtacaactttattccttatcaaccaataagactaaacgacaacaagccaccatattcccatcctactcaaataaaaatttaaactg 26568469  T
Q  293 atattgcagagctctcaataaagagagctctttcaaaaattagcgtatgccgctttaagtgacgcgcacacggtattctttagtaaaaggcgaaagaata 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26568468 atattgcagagctctcaataaagagagctctttcaaaaattagcgtatgccgctttaagtgacgcgcacacggtattctttagtaaaaggcaaaagaata 26568369  T
Q  393 gttcgctatgtgctcatcacacggctccgtgatttggaatgaaagaagtcctttcattatataa 456  Q
    |||||||||||||||||||||| ||| | || |||| ||||| ||||||||| |||||||||||    
T  26568368 gttcgctatgtgctcatcacacagctgcatggtttgaaatgagagaagtcctctcattatataa 26568305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 326 - 427
Target Start/End: Complemental strand, 5900622 - 5900521
Alignment:
Q  326 caaaaattagcgtatgccgctttaagtgacgcgcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctccgtgat 425  Q
    ||||||| ||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||    
T  5900622 caaaaataagcgtataccgcttaaagtgacacgcacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgcttatcacacggttccgtgat 5900523  T
Q  426 tt 427  Q
    ||    
T  5900522 tt 5900521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 358 - 411
Target Start/End: Original strand, 43633442 - 43633495
Alignment:
Q  358 gcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatca 411  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  43633442 gcacacggtattctttagtaaaaggcgaaagaatagttcactttgtgctcatca 43633495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 426
Target Start/End: Original strand, 2341338 - 2341396
Alignment:
Q  368 ttctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctccgtgatt 426  Q
    |||||| ||||||||||||||||||||||||| ||||||||  ||| ||||||| ||||    
T  2341338 ttcttttgtaaaaggcgaaagaatagttcgctttgtgctcactacatggctccgggatt 2341396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 152; Significance: 3e-80; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 280 - 538
Target Start/End: Original strand, 43014287 - 43014543
Alignment:
Q  280 aaaatttaaactgatattgcagagctctcaataaagagagctctttcaaaaattagcgtatgccgctttaagtgacgcgcacacggtattctttagtaaa 379  Q
    |||||||||||| |||||||||||| |||||| |||||||||||||||||||||| ||||||||| | |||||||||| |||||||||||||||||||||    
T  43014287 aaaatttaaactaatattgcagagccctcaatcaagagagctctttcaaaaattaacgtatgccgttataagtgacgcacacacggtattctttagtaaa 43014386  T
Q  380 aggcgaaagaatagttcgctatgtgctcatcacacggctccgtgatttggaatgaaagaagtcctttcattatataacattaactacttaatgttatttg 479  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||  || |||||||||||||| |||||  ||| | ||| | | ||||||     
T  43014387 aggcgaaagaatagttcgctatgtgctcatcacacggctccgtgatttgtaacaaatgaagtcctttcattttataatgttagcaactcacttttattta 43014486  T
Q  480 taaactagtcgatgtgggctatagacagaacatagacacacactataataccatgttac 538  Q
     ||||||||||||||||||||||||||||||||  || ||| ||||||||||| |||||    
T  43014487 caaactagtcgatgtgggctatagacagaacat--acgcacgctataataccaagttac 43014543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 279 - 424
Target Start/End: Original strand, 45316372 - 45316516
Alignment:
Q  279 aaaaatttaaactgatattgcagagctctcaataaagagagctctttcaaaaattagcgtatgccgctttaagtgacgcgcacacggtattctttagtaa 378  Q
    |||||||||| || |||||||||||| |||||| ||||| |||||| |||||| || ||||||||| |  ||||||||   |||||||||||||||||||    
T  45316372 aaaaatttaa-ctaatattgcagagccctcaattaagagggctcttccaaaaactaacgtatgccgttaaaagtgacgttgacacggtattctttagtaa 45316470  T
Q  379 aaggcgaaagaatagttcgctatgtgctcatcacacggctccgtga 424  Q
    |||||||||||||||||||||||||  |||||||||||||||||||    
T  45316471 aaggcgaaagaatagttcgctatgtcatcatcacacggctccgtga 45316516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 280 - 422
Target Start/End: Complemental strand, 45152136 - 45151994
Alignment:
Q  280 aaaatttaaactgatattgcagagctctcaataaagagagctctttcaaaaattagcgtatgccgctttaagtgacgcgcacacggtattctttagtaaa 379  Q
    ||||||| |||| |||||||||||| |||  |||||||  ||||| |||||| ||||||||||||||  | ||||| |  ||||||||||||||||||||    
T  45152136 aaaattttaactaatattgcagagccctccgtaaagaggactcttccaaaaactagcgtatgccgctaaatgtgacactgacacggtattctttagtaaa 45152037  T
Q  380 aggcgaaagaatagttcgctatgtgctcatcacacggctccgt 422  Q
    ||||||||||||||||||||||||  | |||||||||||||||    
T  45152036 aggcgaaagaatagttcgctatgtcattatcacacggctccgt 45151994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 279 - 423
Target Start/End: Original strand, 42202350 - 42202493
Alignment:
Q  279 aaaaatttaaactgatattgcagagctctcaataaagagagctctttcaaaaattagcgtatgccgctttaagtgacgcgcacacggtattctttagtaa 378  Q
    |||||||| |||| |||||||||||| ||| | |||||   ||||| |||||| ||||||||||||||  | |||||||  |||||||||||||||||||    
T  42202350 aaaaattttaact-atattgcagagccctccaaaaagaagactcttccaaaaactagcgtatgccgctaaatgtgacgctgacacggtattctttagtaa 42202448  T
Q  379 aaggcgaaagaatagttcgctatgtgctcatcacacggctccgtg 423  Q
    |||||||||||||||||||||||||  ||| ||||||||||||||    
T  42202449 aaggcgaaagaatagttcgctatgtcatcaacacacggctccgtg 42202493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 279 - 423
Target Start/End: Original strand, 42211218 - 42211361
Alignment:
Q  279 aaaaatttaaactgatattgcagagctctcaataaagagagctctttcaaaaattagcgtatgccgctttaagtgacgcgcacacggtattctttagtaa 378  Q
    |||||||| |||| |||||||||||| ||| | |||||   ||||| |||||| ||||||||||||||  | |||||||  |||||||||||||||||||    
T  42211218 aaaaattttaact-atattgcagagccctccaaaaagaagactcttccaaaaactagcgtatgccgctaaatgtgacgctgacacggtattctttagtaa 42211316  T
Q  379 aaggcgaaagaatagttcgctatgtgctcatcacacggctccgtg 423  Q
    |||||||||||||||||||||||||  ||| ||||||||||||||    
T  42211317 aaggcgaaagaatagttcgctatgtcatcaacacacggctccgtg 42211361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 320 - 423
Target Start/End: Complemental strand, 10542495 - 10542392
Alignment:
Q  320 ctctttcaaaaattagcgtatgccgctttaagtgacgcgcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctc 419  Q
    ||||| |||||| ||||||||||||||    || |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10542495 ctcttccaaaaactagcgtatgccgctaattgtaacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctc 10542396  T
Q  420 cgtg 423  Q
    ||||    
T  10542395 cgtg 10542392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 279 - 423
Target Start/End: Complemental strand, 42409740 - 42409597
Alignment:
Q  279 aaaaatttaaactgatattgcagagctctcaataaagagagctctttcaaaaattagcgtatgccgctttaagtgacgcgcacacggtattctttagtaa 378  Q
    |||||||| |||| |||||||||||| ||||| ||| ||  ||||| |||||| || |||||| || |  | |||||||  |||||||||||||||||||    
T  42409740 aaaaatttgaact-atattgcagagccctcaacaaaaaggactcttccaaaaactaacgtatgtcgttaaatgtgacgctgacacggtattctttagtaa 42409642  T
Q  379 aaggcgaaagaatagttcgctatgtgctcatcacacggctccgtg 423  Q
    |||||||||||||||||||||||||  ||||||||| ||||||||    
T  42409641 aaggcgaaagaatagttcgctatgtcatcatcacacagctccgtg 42409597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 320 - 428
Target Start/End: Original strand, 2176317 - 2176425
Alignment:
Q  320 ctctttcaaaaattagcgtatgccgctttaagtgacgcgcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctc 419  Q
    ||||| |||||| ||||||||||||||  | ||||| |  ||||||||||||||||||||||||||||||||||||||||||||  | |||||||| |||    
T  2176317 ctcttccaaaaactagcgtatgccgctaaatgtgacactgacacggtattctttagtaaaaggcgaaagaatagttcgctatgtcattatcacacgtctc 2176416  T
Q  420 cgtgatttg 428  Q
    |||| ||||    
T  2176417 cgtgctttg 2176425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 360 - 420
Target Start/End: Original strand, 42217273 - 42217333
Alignment:
Q  360 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctcc 420  Q
    |||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  42217273 acacagtattctttagtaaaaggcgaaagaatagttcgctatgtcgtcatcacacggctcc 42217333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 364 - 423
Target Start/End: Complemental strand, 42417700 - 42417641
Alignment:
Q  364 ggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctccgtg 423  Q
    ||||||||||||||||||||||||||||| ||||||||||  ||||||||| ||||||||    
T  42417700 ggtattctttagtaaaaggcgaaagaataattcgctatgtcatcatcacacagctccgtg 42417641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 422
Target Start/End: Complemental strand, 51795074 - 51795018
Alignment:
Q  366 tattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctccgt 422  Q
    |||||||||||||||||||||| ||||||| |||||||  ||||||||||| |||||    
T  51795074 tattctttagtaaaaggcgaaacaatagtttgctatgtcatcatcacacggttccgt 51795018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 137; Significance: 3e-71; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 275 - 499
Target Start/End: Complemental strand, 17889570 - 17889347
Alignment:
Q  275 aaataaaaatttaaactgatattgcagagctctcaataaagagagctctttcaaaaattagcgtatgccgctttaagtgacgcgcacacggtattcttta 374  Q
    ||||||||  ||||||| |||||||||| | |||| ||| |||  ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  17889570 aaataaaatattaaactaatattgcagaaccctcattaaggaggactctttcaaaaattagcgtatgccgcttttagtgacgtgcacacggtattcttta 17889471  T
Q  375 gtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctccgtgatttggaatgaaagaagtcctttcattatataacattaactacttaatgtt 474  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||  ||||||||||||||||| ||| |||||||| ||| | ||| ||||    
T  17889470 gtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctccgtggcttataatgaaagaagtcctttgattttataacatcaac-aattattgtt 17889372  T
Q  475 atttgtaaactagtcgatgtgggct 499  Q
    |||||||||||||||||||||||||    
T  17889371 atttgtaaactagtcgatgtgggct 17889347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 326 - 427
Target Start/End: Original strand, 49588161 - 49588262
Alignment:
Q  326 caaaaattagcgtatgccgctttaagtgacgcgcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctccgtgat 425  Q
    |||||||  |||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||    
T  49588161 caaaaatatgcgtataccgcttaaagtgacacgcacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgcttatcacacggttccgtgat 49588260  T
Q  426 tt 427  Q
    ||    
T  49588261 tt 49588262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 322 - 423
Target Start/End: Complemental strand, 36790936 - 36790835
Alignment:
Q  322 ctttcaaaaattagcgtatgccgctttaagtgacgcgcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctccg 421  Q
    |||| |||||||| ||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| | | ||||||    
T  36790936 ctttaaaaaattatcgtatgctgctttaagcgacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgctcatcgcgcagctccg 36790837  T
Q  422 tg 423  Q
    ||    
T  36790836 tg 36790835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 321 - 428
Target Start/End: Complemental strand, 25698910 - 25698803
Alignment:
Q  321 tctttcaaaaattagcgtatgccgctttaagtgacgcgcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctcc 420  Q
    |||| |||||| ||||||||||||||     |||||| |||||||||||||||| ||||||||||||||||||| | ||||||| ||||||||| |||||    
T  25698910 tcttccaaaaactagcgtatgccgctaattatgacgctcacacggtattctttaataaaaggcgaaagaatagtccactatgtgatcatcacacagctcc 25698811  T
Q  421 gtgatttg 428  Q
    ||| ||||    
T  25698810 gtgctttg 25698803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 20918725 - 20918690
Alignment:
Q  369 tctttagtaaaaggcgaaagaatagttcgctatgtg 404  Q
    ||||||||||||||||||||||||||| ||||||||    
T  20918725 tctttagtaaaaggcgaaagaatagtttgctatgtg 20918690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 403
Target Start/End: Original strand, 46362544 - 46362583
Alignment:
Q  364 ggtattctttagtaaaaggcgaaagaatagttcgctatgt 403  Q
    ||||||||||||||||| |||||| |||||||||||||||    
T  46362544 ggtattctttagtaaaaagcgaaataatagttcgctatgt 46362583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 2e-51; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 320 - 427
Target Start/End: Original strand, 21884057 - 21884164
Alignment:
Q  320 ctctttcaaaaattagcgtatgccgctttaagtgacgcgcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctc 419  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21884057 ctctttcaaaaattaacgtatgccgctttaagtgacgcgcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctc 21884156  T
Q  420 cgtgattt 427  Q
    ||||||||    
T  21884157 cgtgattt 21884164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 280 - 427
Target Start/End: Original strand, 35717163 - 35717311
Alignment:
Q  280 aaaatttaaactgatattgcagagctctcaataaagagagctctttcaaaaattagcgtatgccgctttaagtgacgcgcacacggtattcttt-agtaa 378  Q
    |||||||||| | |||||| ||||| ||| ||| |||||||||||| |||||| || |||||| ||| |||||||  |||| | |||||| ||| |||||    
T  35717163 aaaatttaaattaatattgtagagccctcgatatagagagctctttaaaaaataagtgtatgctgctataagtgatacgcatatggtatttttttagtaa 35717262  T
Q  379 aaggcgaaagaatagttcgctatgtgctcatcacacggctccgtgattt 427  Q
    ||| ||||| ||||||| |||||||||||||||||||||| | ||||||    
T  35717263 aagacgaaataatagtttgctatgtgctcatcacacggcttcatgattt 35717311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 360 - 420
Target Start/End: Complemental strand, 46446277 - 46446217
Alignment:
Q  360 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctcc 420  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||    
T  46446277 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacaaggctcc 46446217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 6e-45; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 279 - 427
Target Start/End: Original strand, 31555089 - 31555237
Alignment:
Q  279 aaaaatttaaactgatattgcagagctctcaataaagagagctctttcaaaaattagcgtatgccgctttaagtgacgcgcacacggtattctttagtaa 378  Q
    ||||| ||||||| |||||||||||| |||||||||||   ||||| |||||| ||||||||||||||    ||||||| ||||||||||||||||||||    
T  31555089 aaaaaattaaactaatattgcagagccctcaataaagaagactcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagtaa 31555188  T
Q  379 aaggcgaaagaatagttcgctatgtgctcatcacacggctccgtgattt 427  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31555189 aaggcgaaagaatagttcgctatgtgatcatcacacggctccgtgattt 31555237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 279 - 427
Target Start/End: Complemental strand, 31878380 - 31878232
Alignment:
Q  279 aaaaatttaaactgatattgcagagctctcaataaagagagctctttcaaaaattagcgtatgccgctttaagtgacgcgcacacggtattctttagtaa 378  Q
    ||||| ||||||| |||||||||||| |||||||||||   ||||| |||||| ||||||||||||||    ||||||| ||||||||||||||||||||    
T  31878380 aaaaaattaaactaatattgcagagccctcaataaagaagactcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagtaa 31878281  T
Q  379 aaggcgaaagaatagttcgctatgtgctcatcacacggctccgtgattt 427  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31878280 aaggcgaaagaatagttcgctatgtgatcatcacacggctccgtgattt 31878232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 296 - 420
Target Start/End: Original strand, 31558191 - 31558315
Alignment:
Q  296 ttgcagagctctcaataaagagagctctttcaaaaattagcgtatgccgctttaagtgacgcgcacacggtattctttagtaaaaggcgaaagaatagtt 395  Q
    ||||||||| ||||||| ||||  |||||  ||||| || |||||||||||    ||||||  |||||||||||||||||||||||||||||||||||||    
T  31558191 ttgcagagccctcaatatagaggactcttctaaaaactaacgtatgccgctaattgtgacgttcacacggtattctttagtaaaaggcgaaagaatagtt 31558290  T
Q  396 cgctatgtgctcatcacacggctcc 420  Q
    ||||||||| |||||||||||||||    
T  31558291 cgctatgtgatcatcacacggctcc 31558315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 320 - 424
Target Start/End: Original strand, 4042200 - 4042304
Alignment:
Q  320 ctctttcaaaaattagcgtatgccgctttaagtgacgcgcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctc 419  Q
    ||||| |||||||| || ||||||| |   ||||||| || ||| |||||||||||| |||||||||||||||||| ||| || |||||||||||||||     
T  4042200 ctcttccaaaaattggcatatgccgttaatagtgacgagcccacagtattctttagtcaaaggcgaaagaatagtttgctttgagctcatcacacggctg 4042299  T
Q  420 cgtga 424  Q
    |||||    
T  4042300 cgtga 4042304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 416
Target Start/End: Original strand, 13568429 - 13568476
Alignment:
Q  369 tctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacgg 416  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||    
T  13568429 tctttagtaaaaggcgaaagaatagttcgctatgtgattatcacacgg 13568476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 278 - 425
Target Start/End: Complemental strand, 10109446 - 10109299
Alignment:
Q  278 taaaaatttaaactgatattgcagagctctcaataaagagagctctttcaaaaattagcgtatgccgctttaagtgacgcgcacacggtattctttagta 377  Q
    |||||| || |||| | |||||||||| ||| ||||||||  ||||| |||||| ||||||||||||||    ||||||| |||||||||||||||||||    
T  10109446 taaaaaatttaactaaaattgcagagccctccataaagaggactcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagta 10109347  T
Q  378 aaaggcgaaagaatagttcgctatgtgctcatcacacggctccgtgat 425  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10109346 aaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtgat 10109299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 295 - 427
Target Start/End: Original strand, 10209709 - 10209841
Alignment:
Q  295 attgcagagctctcaataaagagagctctttcaaaaattagcgtatgccgctttaagtgacgcgcacacggtattctttagtaaaaggcgaaagaatagt 394  Q
    |||||||||| ||| ||||||||| ||||| |||||| || |||||||| ||    ||||||| ||||||||||||||||||||||||||||||||||||    
T  10209709 attgcagagccctccataaagagaactcttccaaaaactaacgtatgccactcattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagt 10209808  T
Q  395 tcgctatgtgctcatcacacggctccgtgattt 427  Q
    |||||||||| ||||||||||||||||||||||    
T  10209809 tcgctatgtgttcatcacacggctccgtgattt 10209841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 296 - 423
Target Start/End: Complemental strand, 10106015 - 10105888
Alignment:
Q  296 ttgcagagctctcaataaagagagctctttcaaaaattagcgtatgccgctttaagtgacgcgcacacggtattctttagtaaaaggcgaaagaatagtt 395  Q
    ||||||||| ||||||||||||  ||||| |||||| ||||||||||||||     |||||| |||||||||||||||||||||||||||||||||||||    
T  10106015 ttgcagagccctcaataaagaggactcttccaaaaactagcgtatgccgctaattatgacgctcacacggtattctttagtaaaaggcgaaagaatagtt 10105916  T
Q  396 cgctatgtgctcatcacacggctccgtg 423  Q
    ||||||||| ||||||||||||||||||    
T  10105915 cgctatgtgatcatcacacggctccgtg 10105888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 296 - 422
Target Start/End: Complemental strand, 10102931 - 10102805
Alignment:
Q  296 ttgcagagctctcaataaagagagctctttcaaaaattagcgtatgccgctttaagtgacgcgcacacggtattctttagtaaaaggcgaaagaatagtt 395  Q
    ||||||||| |||||| |||||  ||||| |||||| ||| ||||||||||    ||||||| |||||||||||||||||||||||||||||||||||||    
T  10102931 ttgcagagccctcaatgaagaggactcttccaaaaactagtgtatgccgctaattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagtt 10102832  T
Q  396 cgctatgtgctcatcacacggctccgt 422  Q
    ||||||||| ||||||||| |||||||    
T  10102831 cgctatgtgatcatcacacagctccgt 10102805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 320 - 422
Target Start/End: Original strand, 10212285 - 10212387
Alignment:
Q  320 ctctttcaaaaattagcgtatgccgctttaagtgacgcgcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctc 419  Q
    ||||| |||||| ||||||||||||||    ||||| | ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10212285 ctcttccaaaaactagcgtatgccgctaattgtgacactcacacagtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctc 10212384  T
Q  420 cgt 422  Q
    |||    
T  10212385 cgt 10212387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 354 - 423
Target Start/End: Complemental strand, 13856085 - 13856016
Alignment:
Q  354 acgcgcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctccgtg 423  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  13856085 acgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcactcggctccgtg 13856016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 351 - 423
Target Start/End: Original strand, 12109382 - 12109454
Alignment:
Q  351 gtgacgcgcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctccgtg 423  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||  ||||||||||    
T  12109382 gtgacgctcacacggtattctttagtaaaaggcgaaagaatagtttgctatgtgatcatcaggcggctccgtg 12109454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 368 - 422
Target Start/End: Original strand, 37278735 - 37278789
Alignment:
Q  368 ttctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctccgt 422  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37278735 ttctttagtaaaaggcgaaagaatagttcgttatgtgctcatcacacggctccgt 37278789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 360 - 417
Target Start/End: Original strand, 9674763 - 9674820
Alignment:
Q  360 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggc 417  Q
    ||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||    
T  9674763 acacggtattctttagtaaaaggcgaaagaatagttcactttgtgatcatcacacggc 9674820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 371 - 420
Target Start/End: Original strand, 12104608 - 12104657
Alignment:
Q  371 tttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctcc 420  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12104608 tttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctcc 12104657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 364 - 424
Target Start/End: Original strand, 3467667 - 3467727
Alignment:
Q  364 ggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctccgtga 424  Q
    |||||||||||||||||||||||||||||||| ||| || ||||||||||||||| |||||    
T  3467667 ggtattctttagtaaaaggcgaaagaatagtttgctttgagctcatcacacggctgcgtga 3467727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 359 - 420
Target Start/End: Original strand, 9660279 - 9660340
Alignment:
Q  359 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctcc 420  Q
    ||||| ||||||||||||||||||| ||| |||||||||||||||| |||||||| ||||||    
T  9660279 cacacagtattctttagtaaaaggcaaaataatagttcgctatgtgatcatcacaaggctcc 9660340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 359 - 420
Target Start/End: Original strand, 10215923 - 10215984
Alignment:
Q  359 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctcc 420  Q
    |||| |||||||||||||||||||| |||||||||||  ||||||| ||| ||||| |||||    
T  10215923 cacaaggtattctttagtaaaaggcaaaagaatagtttactatgtgatcaacacacagctcc 10215984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 8e-35; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 295 - 426
Target Start/End: Complemental strand, 3647154 - 3647023
Alignment:
Q  295 attgcagagctctcaataaagagagctctttcaaaaattagcgtatgccgctttaagtgacgcgcacacggtattctttagtaaaaggcgaaagaatagt 394  Q
    |||||||||| ||||||||||||  | |||||||||| ||| ||||||||||   ||||||||  |||||||||||||||||||||||||||||||||||    
T  3647154 attgcagagccctcaataaagaggaccctttcaaaaactagtgtatgccgctaatagtgacgctgacacggtattctttagtaaaaggcgaaagaatagt 3647055  T
Q  395 tcgctatgtgctcatcacacggctccgtgatt 426  Q
    | |||||||  |||||||||||||||||||||    
T  3647054 ttgctatgtcatcatcacacggctccgtgatt 3647023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 275 - 426
Target Start/End: Complemental strand, 3649623 - 3649472
Alignment:
Q  275 aaataaaaatttaaactgatattgcagagctctcaataaagagagctctttcaaaaattagcgtatgccgctttaagtgacgcgcacacggtattcttta 374  Q
    ||||||||| || |||| |||||||||||| |||||| |||||  | ||| |||||| |||| ||||||| |    |||| ||  |||||||||||||||    
T  3649623 aaataaaaaattgaactaatattgcagagccctcaattaagaggacccttccaaaaactagcatatgccgataattgtgatgctaacacggtattcttta 3649524  T
Q  375 gtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctccgtgatt 426  Q
    |||||||||||||||||||||||||||||  |||||||||  ||||||||||    
T  3649523 gtaaaaggcgaaagaatagttcgctatgtcatcatcacacaactccgtgatt 3649472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 275 - 414
Target Start/End: Complemental strand, 3657740 - 3657601
Alignment:
Q  275 aaataaaaatttaaactgatattgcagagctctcaataaaga-gagctctttcaaaaattagcgtatgccgctttaagtgacgcgcacacggtattcttt 373  Q
    ||||||||| || |||| |||||||||||  ||| ||||||| || | ||| |||||| ||| |||||||||| |  |||||||  ||||||||||||||    
T  3657740 aaataaaaaattgaactaatattgcagagtcctcgataaagatgatc-cttccaaaaactagtgtatgccgctatttgtgacgctgacacggtattcttt 3657642  T
Q  374 agtaaaaggcgaaagaatagttcgctatgtgctcatcacac 414  Q
    ||||||||||||||||||||||||||||||  |||||||||    
T  3657641 agtaaaaggcgaaagaatagttcgctatgtcatcatcacac 3657601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 365 - 418
Target Start/End: Complemental strand, 3641264 - 3641211
Alignment:
Q  365 gtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggct 418  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  3641264 gtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacggct 3641211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 358 - 404
Target Start/End: Original strand, 19523282 - 19523328
Alignment:
Q  358 gcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtg 404  Q
    |||||||| |||||||||||||||||||||||||  |||||| ||||    
T  19523282 gcacacggaattctttagtaaaaggcgaaagaattattcgctctgtg 19523328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 371 - 413
Target Start/End: Complemental strand, 33270878 - 33270836
Alignment:
Q  371 tttagtaaaaggcgaaagaatagttcgctatgtgctcatcaca 413  Q
    |||||||||||||||||||||||| |||| ||| |||||||||    
T  33270878 tttagtaaaaggcgaaagaatagtccgctttgtactcatcaca 33270836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 8e-32; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 322 - 428
Target Start/End: Complemental strand, 33891693 - 33891587
Alignment:
Q  322 ctttcaaaaattagcgtatgccgctttaagtgacgcgcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctccg 421  Q
    ||||||||||| ||||||| ||||||| ||||||   |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  33891693 ctttcaaaaataagcgtataccgcttttagtgacaaacacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgcttatcacacggttccg 33891594  T
Q  422 tgatttg 428  Q
    || ||||    
T  33891593 tggtttg 33891587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 368 - 422
Target Start/End: Original strand, 27868671 - 27868725
Alignment:
Q  368 ttctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctccgt 422  Q
    ||||| |||||||| ||||| ||||||| |||||||| |||| ||||||||||||    
T  27868671 ttcttaagtaaaagacgaaacaatagtttgctatgtgatcattacacggctccgt 27868725  T

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