View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14480_high_9 (Length: 506)
Name: NF14480_high_9
Description: NF14480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14480_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 17 - 490
Target Start/End: Complemental strand, 21144241 - 21143754
Alignment:
| Q |
17 |
aaaaataaagttcaattcatgaccacaaaattaagtcaaattttaaatatataatttcaaaccactattaatatttgtgtaaa--tattaga-------a |
107 |
Q |
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| T |
21144241 |
aaaaaaaaagttcaattcatgaccacaaaattaagtcaaattttaaatatataatttcaaaccactattaatatttgtgtaaacatattagattgatgaa |
21144142 |
T |
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| Q |
108 |
tgatgatataatgattatatcattatatgtgcatgacgtgtaatatgttacttgtagtacaatgttatggttccttaagatctatatagtcacattgaaa |
207 |
Q |
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| T |
21144141 |
tgatgatataatgattatatgattatatgtgcatgacgtgtaatatgttacttgtagtacaatgttatggttccttaagatctatatagtcacattgaaa |
21144042 |
T |
|
| Q |
208 |
atatcactaccgactaataaaattatataacagcaaagtatattattcataacaaatcggtacaacaaccttttgaccaggatctcatcgaacataagca |
307 |
Q |
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| T |
21144041 |
atatcactaccgactaataaaattatataacagcaaagtatattattcataacaaatcggtacaacaaccttttgacctggatctcatcgaacataagca |
21143942 |
T |
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| Q |
308 |
ttgctttcggattcaaactacttttaactcatcaccacatgacatatannnnnnnnnnggtacatcaccacatgacattttattctaactatttagttaa |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
21143941 |
ttgctttcggattcaaactacttttaactcatcaccacatgacatata-tttttttttgatacatcaccacatgacattttattctaactatttagttaa |
21143843 |
T |
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| Q |
408 |
atatggttttat------nnnnnnnnnnnnnnnntcactgtttacatcgtcactatggtcctaacttcatttgacaaattcagattcat |
490 |
Q |
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| T |
21143842 |
atatggtttaataaaaaaaaaataaaaaaaaaagtcactgtttacatcgtcactatggtcctaacttcatttcacaaattcagattcat |
21143754 |
T |
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