View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14480_low_14 (Length: 391)

Name: NF14480_low_14
Description: NF14480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14480_low_14
NF14480_low_14
[»] chr3 (30 HSPs)
chr3 (16-375)||(22358128-22358487)
chr3 (15-375)||(22635628-22635988)
chr3 (16-363)||(22442865-22443212)
chr3 (15-360)||(22468073-22468418)
chr3 (15-360)||(22630563-22630909)
chr3 (15-312)||(22353936-22354235)
chr3 (15-363)||(22368052-22368385)
chr3 (29-316)||(22458628-22458915)
chr3 (29-316)||(22481609-22481896)
chr3 (29-312)||(22436773-22437056)
chr3 (229-331)||(22632204-22632306)
chr3 (15-113)||(22431298-22431396)
chr3 (173-310)||(22431435-22431571)
chr3 (33-113)||(30989448-30989528)
chr3 (33-151)||(18967130-18967248)
chr3 (29-111)||(22615407-22615489)
chr3 (33-114)||(22115327-22115408)
chr3 (250-298)||(21945682-21945730)
chr3 (199-298)||(21937211-21937310)
chr3 (33-87)||(21945893-21945947)
chr3 (33-86)||(21930691-21930744)
chr3 (250-298)||(21930479-21930527)
chr3 (250-298)||(22028058-22028106)
chr3 (250-298)||(22034575-22034623)
chr3 (250-298)||(22052791-22052839)
chr3 (250-298)||(22115143-22115191)
chr3 (250-298)||(22179475-22179523)
chr3 (250-298)||(22187046-22187094)
chr3 (29-81)||(22621053-22621105)
chr3 (29-81)||(22657205-22657257)
[»] chr4 (2 HSPs)
chr4 (29-94)||(29610706-29610771)
chr4 (210-284)||(29610891-29610962)
[»] chr8 (1 HSPs)
chr8 (250-298)||(27294606-27294654)
[»] chr1 (3 HSPs)
chr1 (29-81)||(34975657-34975709)
chr1 (29-81)||(34980437-34980489)
chr1 (29-81)||(34989492-34989544)


Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 16 - 375
Target Start/End: Original strand, 22358128 - 22358487
Alignment:
Q  16 aaaaatgtgactcccatacatcatcaaacactacaacataccttttttcttgcaagtagtttctcacttcatcaactaatgactgtcgatccatttgatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  22358128 aaaaatgtgactcccatacatcatcaaacactacaacataccttttttcttgcaagtagtttctcacttcatcaactaatgactgtcgatccatttgacg 22358227  T
Q  116 gagactctgaggaggaactttcctttgttgtttgtaaaactcgagcataatgtccctcaacactttttctgtattgtatggtcgagacaccgtaatccat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22358228 gagactctgaggaggaactttcctttgttgtttgtaaaactcgagcataatgtccctcaacactttttctgtattgtatggtcgagacaccgtaatccat 22358327  T
Q  216 acacgacgatcaaagtgttttacgacctttgggttgtcaaaaactttcttcgctagagtggtttttcccagtcctcccattccaacaatggagacaattg 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22358328 acacgacgatcaaagtgttttacgacctttgggttgtcaaaaactttcttcgctagagtggtttttcccagtcctcccattccaacaatggagacaattg 22358427  T
Q  316 tccggtctgctcttcctgctaccaaaaaatcaatcaatttgtctcttgtcttatcaaatc 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22358428 tccggtctgctcttcctgctaccaaaaaatcaatcaatttgtctcttgtcttatcaaatc 22358487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 15 - 375
Target Start/End: Original strand, 22635628 - 22635988
Alignment:
Q  15 caaaaatgtgactcccatacatcatcaaacactacaacataccttttttcttgcaagtagtttctcacttcatcaactaatgactgtcgatccatttgat 114  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||| |||||||||||||||||||||||||| ||||||||||||||    
T  22635628 caaaaatgtgactcccatacatcatcaaacactaaaacatacctttttccttgaaagtggtttctcacttcatcaactaatgactttcgatccatttgat 22635727  T
Q  115 ggagactctgaggaggaactttcctttgttgtttgtaaaactcgagcataatgtccctcaacactttttctgtattgtatggtcgagacaccgtaatcca 214  Q
    ||||||||| ||||||||||| || |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  22635728 ggagactctcaggaggaacttccccttgttgtttgtaaaactcgagcataatgtctcgcaacactttttctgtattgtatggtcgagacaccgtaatcca 22635827  T
Q  215 tacacgacgatcaaagtgttttacgacctttgggttgtcaaaaactttcttcgctagagtggtttttcccagtcctcccattccaacaatggagacaatt 314  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||  ||||||||||||    
T  22635828 tacacgacaatcaaagtattttacgacctttgggttgtcaaaaactttcttcgctagagtggtttttccttgtcctcccattccaaagatggagacaatt 22635927  T
Q  315 gtccggtctgctcttcctgctaccaaaaaatcaatcaatttgtctcttgtcttatcaaatc 375  Q
    ||||||||||||||||| |||||||||| ||||||||||| |||||||| |||||||||||    
T  22635928 gtccggtctgctcttcccgctaccaaaagatcaatcaattcgtctcttggcttatcaaatc 22635988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 363
Target Start/End: Original strand, 22442865 - 22443212
Alignment:
Q  16 aaaaatgtgactcccatacatcatcaaacactacaacataccttttttcttgcaagtagtttctcacttcatcaactaatgactgtcgatccatttgatg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22442865 aaaaatgtgactcccatacatcatcaaacactacaacataccttttttcttgcaagtagtttctcacttcatcaactaatgactgtcgatccatttgatg 22442964  T
Q  116 gagactctgaggaggaactttcctttgttgtttgtaaaactcgagcataatgtccctcaacactttttctgtattgtatggtcgagacaccgtaatccat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||| | |||||||| | ||||||    
T  22442965 gagactctgaggaggaactttcctttgttgtttgtaaaactcgagcataatgtccctcaacactttttcaatattgaatgattgagacaccatgatccat 22443064  T
Q  216 acacgacgatcaaagtgttttacgacctttgggttgtcaaaaactttcttcgctagagtggtttttcccagtcctcccattccaacaatggagacaattg 315  Q
    | | |||  |||||||| || || |||||| |||||||||||| ||   | ||||||||||||||||||| |||||||||||||||||||||||||| ||    
T  22443065 aaaagacagtcaaagtgcttaactaccttttggttgtcaaaaatttgtctggctagagtggtttttcccaatcctcccattccaacaatggagacaactg 22443164  T
Q  316 tccggtctgctcttcctgctaccaaaaaatcaatcaatttgtctcttg 363  Q
    | |||||| |||||||  ||||||| ||||||||||||||||||||||    
T  22443165 tgcggtcttctcttccctctaccaacaaatcaatcaatttgtctcttg 22443212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 15 - 360
Target Start/End: Original strand, 22468073 - 22468418
Alignment:
Q  15 caaaaatgtgactcccatacatcatcaaacactacaacataccttttttcttgcaagtagtttctcacttcatcaactaatgactgtcgatccatttgat 114  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||| ||||    
T  22468073 caaaaatgtgaatcccatacatcatcaaacactataacatacctttttccttgcaagtagtttctcacttcatcaactaatggctttcgatccatctgat 22468172  T
Q  115 ggagactctgaggaggaactttcctttgttgtttgtaaaactcgagcataatgtccctcaacactttttctgtattgtatggtcgagacaccgtaatcca 214  Q
    ||||||||||||||||| ||| || ||||||||||||||  ||||||| ||| |||||||||| ||||||| |||||||||||||||||||||| |||||    
T  22468173 ggagactctgaggaggatcttccccttgttgtttgtaaatatcgagcaaaatttccctcaacaatttttctatattgtatggtcgagacaccgtgatcca 22468272  T
Q  215 tacacgacgatcaaagtgttttacgacctttgggttgtcaaaaactttcttcgctagagtggtttttcccagtcctcccattccaacaatggagacaatt 314  Q
    |||| ||| |||||| ||||| ||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||      
T  22468273 tacatgacaatcaaaatgtttaacgaccttttggttgtcaaaaactttcttggctatagtggtttttcccagtcctcccattccaactatggagacaacg 22468372  T
Q  315 gtccggtctgctcttcctgctaccaaaaaatcaatcaatttgtctc 360  Q
    || || |||||||||||  ||||||| |||||||||||||||||||    
T  22468373 gtgcgctctgctcttccctctaccaacaaatcaatcaatttgtctc 22468418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 360
Target Start/End: Original strand, 22630563 - 22630909
Alignment:
Q  15 caaaaatgtgactcccatacatcatcaaacactacaa-cataccttttttcttgcaagtagtttctcacttcatcaactaatgactgtcgatccatttga 113  Q
    ||||| |||| |||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||    
T  22630563 caaaattgtgcctcccatacatcatcaaacactacaaacgtacctttttccttgcaagtagtttctcacttcatcaactaatggctttcgatccatttga 22630662  T
Q  114 tggagactctgaggaggaactttcctttgttgtttgtaaaactcgagcataatgtccctcaacactttttctgtattgtatggtcgagacaccgtaatcc 213  Q
    |||||||| ||||||||| |||||| |||||||||||||| |||||||| |||||||||||||| | ||||| |||||||||||||||||||||| ||||    
T  22630663 tggagactttgaggaggatctttcccttgttgtttgtaaatctcgagcaaaatgtccctcaacaatgtttctatattgtatggtcgagacaccgtgatcc 22630762  T
Q  214 atacacgacgatcaaagtgttttacgacctttgggttgtcaaaaactttcttcgctagagtggtttttcccagtcctcccattccaacaatggagacaat 313  Q
    || || ||| |||||||||||| ||||||||| |||||||||||| |||||| || ||||||||||| ||||||||||||||||||||||| |||||||     
T  22630763 attcatgacaatcaaagtgtttaacgacctttcggttgtcaaaaattttcttggcaagagtggttttccccagtcctcccattccaacaatagagacaac 22630862  T
Q  314 tgtccggtctgctcttcctgctaccaaaaaatcaatcaatttgtctc 360  Q
    ||| || |||||||||||  ||| ||   ||||||||||||||||||    
T  22630863 tgtgcgttctgctcttccctctatcagccaatcaatcaatttgtctc 22630909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 15 - 312
Target Start/End: Original strand, 22353936 - 22354235
Alignment:
Q  15 caaaaatgtgactcccatacatcatcaaacactacaacataccttttttcttgcaagtagtttctcacttcatcaactaatgactgtcgatccatttgat 114  Q
    ||||||||||||||| |||||| ||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||| || ||||||||||||||    
T  22353936 caaaaatgtgactcctatacattatcaaacactacaacgtacctttttccttgcaagttgtttctcacttcatcaactaatggctttcgatccatttgat 22354035  T
Q  115 ggagactctgaggaggaactttcctttgttgtttgtaaaactcgagcataatgtccctcaacactttttctgtattgtatggtcgagacaccgtaatcc- 213  Q
    ||||||||||||||||| |||||||| |||||||||||| ||| |||| |||||||||||||||||||||| | |||||||||||||| ||||| ||||     
T  22354036 ggagactctgaggaggatctttccttcgttgtttgtaaatctccagcaaaatgtccctcaacactttttctatgttgtatggtcgagataccgtgatcca 22354135  T
Q  214 -atacacgacgatcaaagtgttttacgacctttgggttgtcaaaaactttcttcgctagagtggtttttcccagtcctcccattccaacaatggagacaa 312  Q
     |||||  || ||||||||  || || |||||| ||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||    
T  22354136 tatacataacaatcaaagttcttaactaccttttggttgtcaaaaacttttctggctagagtggtttttcccagtcctcccattccaacaatggagacaa 22354235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 15 - 363
Target Start/End: Original strand, 22368052 - 22368385
Alignment:
Q  15 caaaaatgtgactcccatacatcatcaaacactacaacataccttttttcttgcaagtagtttctcacttcatcaactaatgactgtcgatccatttgat 114  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||| || |||||||||||    
T  22368052 caaaaatgtgagtcccatacatcatcaaacactacaacgtacctttttccttgcaagtagtttctcacttcatcaactaataactttccatccatttgat 22368151  T
Q  115 ggagactctgaggaggaactttcctttgttgtttgtaaaactcgagcataatgtccctcaacactttttctgtattgtatggtcgagacaccgtaatcca 214  Q
    | ||||| |||||||||  ||||| ||||||               ||  |||||| ||| || ||||||| |||| ||||||||||| ||||| |||||    
T  22368152 gaagactttgaggaggacatttcccttgttg---------------cagtatgtccttcagcaatttttctttattatatggtcgagaaaccgtgatcca 22368236  T
Q  215 tacacgacgatcaaagtgttttacgacctttgggttgtcaaaaactttcttcgctagagtggtttttcccagtcctcccattccaacaatggagacaatt 314  Q
    || ||||| |||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |    
T  22368237 taaacgacaatcaaagtgtttaacgaccttttggttgtcaaaaactttcttggctagagtggtttttcccagtcctcccattccaacaatggagacaact 22368336  T
Q  315 gtccggtctgctcttcctgctaccaaaaaatcaatcaatttgtctcttg 363  Q
    || |||| |||||||||  ||||||| ||||||||||||||||||||||    
T  22368337 gtgcggtgtgctcttccctctaccaacaaatcaatcaatttgtctcttg 22368385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 29 - 316
Target Start/End: Original strand, 22458628 - 22458915
Alignment:
Q  29 ccatacatcatcaaacactacaacataccttttttcttgcaagtagtttctcacttcatcaactaatgactgtcgatccatttgatggagactctgagga 128  Q
    ||||||||||||||| |||| ||||||||||||||| ||||||||||| |||||||||||||| ||||||| ||||| ||||||||| | ||| || ||     
T  22458628 ccatacatcatcaaaaactataacataccttttttcctgcaagtagttcctcacttcatcaaccaatgactctcgattcatttgatgaatactttggggg 22458727  T
Q  129 ggaactttcctttgttgtttgtaaaactcgagcataatgtccctcaacactttttctgtattgtatggtcgagacaccgtaatccatacacgacgatcaa 228  Q
     ||  |   | |||||||| |||||||| | |||  |||||||||| ||    |||| ||||||||| | |||||||  | ||||||||| ||| |||||    
T  22458728 agatttgctccttgttgttcgtaaaacttgtgcagcatgtccctcagcaagccttctatattgtatgattgagacactctgatccatacatgacaatcaa 22458827  T
Q  229 agtgttttacgacctttgggttgtcaaaaactttcttcgctagagtggtttttcccagtcctcccattccaacaatggagacaattgt 316  Q
    ||||||| |||| |||   || ||||||||| ||||| || ||||| ||||||||  |||||||| |||||||||||| |||||||||    
T  22458828 agtgtttaacgatcttgttgtcgtcaaaaaccttctttgcaagagttgtttttccttgtcctccctttccaacaatggtgacaattgt 22458915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 29 - 316
Target Start/End: Original strand, 22481609 - 22481896
Alignment:
Q  29 ccatacatcatcaaacactacaacataccttttttcttgcaagtagtttctcacttcatcaactaatgactgtcgatccatttgatggagactctgagga 128  Q
    ||||||||||||||| |||| ||||||||||||||| ||||||||||| |||||||||||||| ||||||| ||||| ||||||||| | ||| || ||     
T  22481609 ccatacatcatcaaaaactataacataccttttttcctgcaagtagttcctcacttcatcaaccaatgactctcgattcatttgatgaatactttggggg 22481708  T
Q  129 ggaactttcctttgttgtttgtaaaactcgagcataatgtccctcaacactttttctgtattgtatggtcgagacaccgtaatccatacacgacgatcaa 228  Q
     ||  |   | |||||||| |||||||| | |||  |||||||||| ||    |||| ||||||||| | |||||||  | ||||||||| ||| |||||    
T  22481709 agatttgctccttgttgttcgtaaaacttgtgcagcatgtccctcagcaagccttctatattgtatgattgagacactctgatccatacatgacaatcaa 22481808  T
Q  229 agtgttttacgacctttgggttgtcaaaaactttcttcgctagagtggtttttcccagtcctcccattccaacaatggagacaattgt 316  Q
    ||||||| |||| |||   || ||||||||| ||||| || ||||| ||||||||  |||||||| |||||||||||| |||||||||    
T  22481809 agtgtttaacgatcttgttgtcgtcaaaaaccttctttgcaagagttgtttttccttgtcctccctttccaacaatggtgacaattgt 22481896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 29 - 312
Target Start/End: Original strand, 22436773 - 22437056
Alignment:
Q  29 ccatacatcatcaaacactacaacataccttttttcttgcaagtagtttctcacttcatcaactaatgactgtcgatccatttgatggagactctgagga 128  Q
    ||||||||| |||||||| ||||  ||||||||||  ||||| |  ||| ||||||||||||  || | || ||  | ||||| ||  | ||||||||||    
T  22436773 ccatacatcgtcaaacacgacaaagtaccttttttgctgcaactgttttatcacttcatcaatcaacggctctccgttcatttcatatatactctgagga 22436872  T
Q  129 ggaactttcctttgttgtttgtaaaactcgagcataatgtccctcaacactttttctgtattgtatggtcgagacaccgtaatccatacacgacgatcaa 228  Q
    ||| |||||| |||||||||||||| |||||||| |||||||||||||| ||||||| || |||||| | ||||||| || ||||||||| |||  ||||    
T  22436873 ggatctttcccttgttgtttgtaaatctcgagcaaaatgtccctcaacaatttttctttactgtatgattgagacactgtgatccatacatgacagtcaa 22436972  T
Q  229 agtgttttacgacctttgggttgtcaaaaactttcttcgctagagtggtttttcccagtcctcccattccaacaatggagacaa 312  Q
    | ||||||| ||| ||   ||| |||||||||||||| || ||||| ||||||||  | ||||||||||| ||||| |||||||    
T  22436973 attgttttaagactttgatgttctcaaaaactttcttggccagagtagtttttccttgccctcccattcctacaatagagacaa 22437056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 229 - 331
Target Start/End: Original strand, 22632204 - 22632306
Alignment:
Q  229 agtgttttacgacctttgggttgtcaaaaactttcttcgctagagtggtttttcccagtcctcccattccaacaatggagacaattgtccggtctgctct 328  Q
    ||||||| |||| |||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||| ||| || ||||||||    
T  22632204 agtgtttaacgatctttcggttgtcaaaaactttcttggctagagtggttttccccagtcctcccattccaataatggagacaactgtgcgatctgctct 22632303  T
Q  329 tcc 331  Q
    |||    
T  22632304 tcc 22632306  T

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Target: chr3; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 22431298 - 22431396
Alignment:
Q  15 caaaaatgtgactcccatacatcatcaaacactacaacataccttttttcttgcaagtagtttctcacttcatcaactaatgactgtcgatccatttga 113  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| || ||||| |||| | | |||||||||||||    
T  22431298 caaaaatttgactcccatacatcatcaaacactacaacgtacctttttccttgcaagtagtttctcagtttatcaagtaataagtttcgatccatttga 22431396  T

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Target: chr3; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 173 - 310
Target Start/End: Original strand, 22431435 - 22431571
Alignment:
Q  173 caacactttttctgtattgtatggtcgagacaccgtaatccatacacgacgatcaaagtgttttacgacctttgggttgtcaaaaactttcttcgctaga 272  Q
    ||||| ||||||| |||  |||||| ||||||| || ||||||| ||||| |||||||||||| | |||| |   |||||||||||||||||| | ||||    
T  22431435 caacaatttttctatatcatatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttaga 22431534  T
Q  273 gtggtttttcccagtcctcccattccaacaatggagac 310  Q
    |||||||||||||||||||||||||| |||||||||||    
T  22431535 gtggtttttcccagtcctcccattcc-acaatggagac 22431571  T

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Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 30989448 - 30989528
Alignment:
Q  33 acatcatcaaacactacaacataccttttttcttgcaagtagtttctcacttcatcaactaatgactgtcgatccatttga 113  Q
    |||||||||||||| || ||||||||||||    |||||||||||||||||||||||   ||||||  |||||||||||||    
T  30989448 acatcatcaaacacaacgacatacctttttaaccgcaagtagtttctcacttcatcagtcaatgaccctcgatccatttga 30989528  T

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Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 151
Target Start/End: Original strand, 18967130 - 18967248
Alignment:
Q  33 acatcatcaaacactacaacataccttttttcttgcaagtagtttctcacttcatcaactaatgactgtcgatccatttgatggagactctgaggagga- 131  Q
    |||||||||||||| ||||||||||| || ||  | ||||||||||| ||||||||    ||||||| ||||||||||||||  | ||||||||| |||     
T  18967130 acatcatcaaacacaacaacatacctcttatcccgtaagtagtttcttacttcatctgtcaatgactctcgatccatttgataaatactctgagggggat 18967229  T
Q  132 actttcctttgttgtttgta 151  Q
     ||||||||| |||||||||    
T  18967230 cctttccttt-ttgtttgta 18967248  T

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Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 111
Target Start/End: Original strand, 22615407 - 22615489
Alignment:
Q  29 ccatacatcatcaaacactacaacataccttttttcttgcaagtagtttctcacttcatcaactaatgactgtcgatccattt 111  Q
    |||||||||||||||||| ||||| ||||| ||||  |||||||||||||| || ||||| | |||||||  || ||||||||    
T  22615407 ccatacatcatcaaacacaacaacgtacctcttttgctgcaagtagtttcttacctcatcgattaatgaccctctatccattt 22615489  T

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Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 114
Target Start/End: Complemental strand, 22115408 - 22115327
Alignment:
Q  33 acatcatcaaacactacaacataccttttttcttgcaagtagtttctcacttcatcaactaatgactgtcgatccatttgat 114  Q
    |||||||||||||| ||||| ||||| ||||  |||||||| |||||||||||||||  |||| |   ||||||||||||||    
T  22115408 acatcatcaaacacgacaacgtacctctttttctgcaagtattttctcacttcatcagttaataatcctcgatccatttgat 22115327  T

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Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 21945730 - 21945682
Alignment:
Q  250 tgtcaaaaactttcttcgctagagtggtttttcccagtcctcccattcc 298  Q
    |||||||||||||||| |||||||||||||||||  | |||||||||||    
T  21945730 tgtcaaaaactttcttggctagagtggtttttccttgccctcccattcc 21945682  T

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Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 199 - 298
Target Start/End: Complemental strand, 21937310 - 21937211
Alignment:
Q  199 gagacaccgtaatccatacacgacgatcaaagtgttttacgacctttgggttgtcaaaaactttcttcgctagagtggtttttcccagtcctcccattcc 298  Q
    ||||||| || ||||||||||||| ||||||||||   ||||| |    | |||||||| ||||||| |||||||||||||||||  | |||||||||||    
T  21937310 gagacactgtgatccatacacgacaatcaaagtgtccaacgacatccttgctgtcaaaagctttcttagctagagtggtttttccttgccctcccattcc 21937211  T

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Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 21945947 - 21945893
Alignment:
Q  33 acatcatcaaacactacaacataccttttttcttgcaagtagtttctcacttcat 87  Q
    ||||||||||| || ||||||||||| ||||  |||||||| |||||||||||||    
T  21945947 acatcatcaaagacgacaacatacctcttttgctgcaagtaatttctcacttcat 21945893  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 21930744 - 21930691
Alignment:
Q  33 acatcatcaaacactacaacataccttttttcttgcaagtagtttctcacttca 86  Q
    |||||||||||||| ||||||||||| ||||  |||||| | ||||||||||||    
T  21930744 acatcatcaaacacgacaacatacctctttttctgcaagcattttctcacttca 21930691  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 21930527 - 21930479
Alignment:
Q  250 tgtcaaaaactttcttcgctagagtggtttttcccagtcctcccattcc 298  Q
    |||||||||||||||| |||||||| ||||||||  | |||||||||||    
T  21930527 tgtcaaaaactttcttggctagagttgtttttccttgccctcccattcc 21930479  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 22028106 - 22028058
Alignment:
Q  250 tgtcaaaaactttcttcgctagagtggtttttcccagtcctcccattcc 298  Q
    |||||||||||||||| |||||||| ||||||||  | |||||||||||    
T  22028106 tgtcaaaaactttcttggctagagttgtttttccttgccctcccattcc 22028058  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 22034623 - 22034575
Alignment:
Q  250 tgtcaaaaactttcttcgctagagtggtttttcccagtcctcccattcc 298  Q
    |||||||||||||||| |||||||| ||||||||  | |||||||||||    
T  22034623 tgtcaaaaactttcttggctagagttgtttttccttgccctcccattcc 22034575  T

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Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 22052839 - 22052791
Alignment:
Q  250 tgtcaaaaactttcttcgctagagtggtttttcccagtcctcccattcc 298  Q
    |||||||||||||||| |||||||| ||||||||  | |||||||||||    
T  22052839 tgtcaaaaactttcttggctagagttgtttttccttgccctcccattcc 22052791  T

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Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 22115191 - 22115143
Alignment:
Q  250 tgtcaaaaactttcttcgctagagtggtttttcccagtcctcccattcc 298  Q
    |||||||||||||||| | |||||||||||||||  | |||||||||||    
T  22115191 tgtcaaaaactttctttgatagagtggtttttccttgccctcccattcc 22115143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 22179523 - 22179475
Alignment:
Q  250 tgtcaaaaactttcttcgctagagtggtttttcccagtcctcccattcc 298  Q
    |||||||||||||||| |||||||| ||||||||  | |||||||||||    
T  22179523 tgtcaaaaactttcttggctagagttgtttttccttgccctcccattcc 22179475  T

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Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 22187094 - 22187046
Alignment:
Q  250 tgtcaaaaactttcttcgctagagtggtttttcccagtcctcccattcc 298  Q
    |||||||||||||||| |||||||| ||||||||  | |||||||||||    
T  22187094 tgtcaaaaactttcttggctagagttgtttttccttgccctcccattcc 22187046  T

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Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 22621053 - 22621105
Alignment:
Q  29 ccatacatcatcaaacactacaacataccttttttcttgcaagtagtttctca 81  Q
    ||||||||||||||| || | ||||||||| |||| |||||||| ||||||||    
T  22621053 ccatacatcatcaaatacaaaaacatacctcttttgttgcaagtggtttctca 22621105  T

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Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 22657205 - 22657257
Alignment:
Q  29 ccatacatcatcaaacactacaacataccttttttcttgcaagtagtttctca 81  Q
    |||||||||||||||||| | ||||||||| ||||  |||||||| |||||||    
T  22657205 ccatacatcatcaaacacaaaaacatacctctttttctgcaagtattttctca 22657257  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 29610706 - 29610771
Alignment:
Q  29 ccatacatcatcaaacactacaacataccttttttcttgcaagtagtttctcacttcatcaactaa 94  Q
    ||||||||| |||||||||||||  |||||||| || |||||||| |||||||||||||| |||||    
T  29610706 ccatacatcgtcaaacactacaaggtaccttttctcctgcaagtaatttctcacttcatcgactaa 29610771  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 284
Target Start/End: Original strand, 29610891 - 29610962
Alignment:
Q  210 atccatacacgacgatcaaagtgttttacgacctttgggttgtcaaaaactttcttcgctagagtggtttttccc 284  Q
    ||||||||||||   ||||||||||  ||||||||   |||||||||||||||||| | |||||| |||||||||    
T  29610891 atccatacacgattgtcaaagtgttcaacgacctt---gttgtcaaaaactttcttagttagagtagtttttccc 29610962  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 27294654 - 27294606
Alignment:
Q  250 tgtcaaaaactttcttcgctagagtggtttttcccagtcctcccattcc 298  Q
    ||||||||||||||||  ||||||||||||||||  |||||||||||||    
T  27294654 tgtcaaaaactttcttgactagagtggtttttccttgtcctcccattcc 27294606  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 34975709 - 34975657
Alignment:
Q  29 ccatacatcatcaaacactacaacataccttttttcttgcaagtagtttctca 81  Q
    |||||||||||||||||| | ||||||||| ||||  |||||||| |||||||    
T  34975709 ccatacatcatcaaacacaaaaacatacctctttttctgcaagtactttctca 34975657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 34980489 - 34980437
Alignment:
Q  29 ccatacatcatcaaacactacaacataccttttttcttgcaagtagtttctca 81  Q
    |||||||||||||||||| | ||||||||| ||||  |||||||| |||||||    
T  34980489 ccatacatcatcaaacacaaaaacatacctctttttctgcaagtaatttctca 34980437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 34989544 - 34989492
Alignment:
Q  29 ccatacatcatcaaacactacaacataccttttttcttgcaagtagtttctca 81  Q
    |||||||||||||||||| | ||||||||| ||||  |||||||| |||||||    
T  34989544 ccatacatcatcaaacacaaaaacatacctctttttctgcaagtactttctca 34989492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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