View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14480_low_16 (Length: 386)

Name: NF14480_low_16
Description: NF14480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14480_low_16
NF14480_low_16
[»] chr8 (8 HSPs)
chr8 (1-362)||(24987796-24988164)
chr8 (56-177)||(12565519-12565647)
chr8 (45-108)||(18447607-18447670)
chr8 (45-108)||(23868535-23868598)
chr8 (45-108)||(24722669-24722732)
chr8 (45-108)||(25233339-25233402)
chr8 (45-108)||(29381359-29381422)
chr8 (66-126)||(29415350-29415410)
[»] chr1 (20 HSPs)
chr1 (45-362)||(15858492-15858816)
chr1 (53-199)||(36977092-36977246)
chr1 (53-112)||(25264823-25264882)
chr1 (52-228)||(36758921-36759104)
chr1 (52-228)||(36759705-36759888)
chr1 (52-228)||(36760488-36760671)
chr1 (52-228)||(36761271-36761454)
chr1 (91-217)||(25425548-25425682)
chr1 (45-108)||(20107171-20107234)
chr1 (52-228)||(36762054-36762237)
chr1 (52-228)||(36766268-36766451)
chr1 (53-123)||(8986934-8987004)
chr1 (45-108)||(18735251-18735314)
chr1 (53-112)||(27910211-27910270)
chr1 (53-112)||(34104229-34104287)
chr1 (56-145)||(10825707-10825795)
chr1 (45-106)||(21983732-21983793)
chr1 (45-106)||(22623933-22623994)
chr1 (52-108)||(18831509-18831565)
chr1 (45-77)||(20033821-20033853)
[»] chr6 (10 HSPs)
chr6 (52-177)||(24319870-24320004)
chr6 (142-177)||(13174888-13174923)
chr6 (45-112)||(14726483-14726550)
chr6 (142-187)||(13183413-13183458)
chr6 (141-177)||(13155288-13155324)
chr6 (141-177)||(13160144-13160180)
chr6 (45-112)||(1635996-1636063)
chr6 (52-138)||(34395008-34395094)
chr6 (163-203)||(13206778-13206818)
chr6 (290-366)||(34394774-34394849)
[»] chr4 (18 HSPs)
chr4 (45-145)||(29566770-29566870)
chr4 (58-198)||(6457015-6457162)
chr4 (307-358)||(29566985-29567036)
chr4 (52-186)||(30242376-30242513)
chr4 (68-145)||(48747622-48747698)
chr4 (53-116)||(19084595-19084658)
chr4 (142-216)||(17263520-17263594)
chr4 (91-145)||(18746462-18746516)
chr4 (290-366)||(17263374-17263451)
chr4 (290-366)||(6764358-6764434)
chr4 (316-356)||(28571866-28571906)
chr4 (45-108)||(7583335-7583398)
chr4 (53-112)||(7613061-7613120)
chr4 (88-119)||(22344311-22344342)
chr4 (313-350)||(18746687-18746724)
chr4 (313-345)||(12880200-12880232)
chr4 (315-363)||(25025323-25025370)
chr4 (53-145)||(29245104-29245196)
[»] chr5 (11 HSPs)
chr5 (52-135)||(20103615-20103698)
chr5 (53-145)||(18751310-18751402)
chr5 (45-138)||(15609583-15609676)
chr5 (91-189)||(18807569-18807674)
chr5 (61-145)||(18043951-18044035)
chr5 (143-217)||(27247877-27247951)
chr5 (313-366)||(27248007-27248060)
chr5 (142-198)||(26270460-26270516)
chr5 (45-112)||(17336958-17337025)
chr5 (45-108)||(28665800-28665863)
chr5 (142-200)||(19964207-19964265)
[»] chr2 (16 HSPs)
chr2 (45-217)||(4450849-4451029)
chr2 (289-347)||(4450722-4450780)
chr2 (53-112)||(8446224-8446283)
chr2 (142-226)||(29985840-29985924)
chr2 (141-187)||(32620451-32620497)
chr2 (61-187)||(12529841-12529975)
chr2 (52-145)||(41669606-41669698)
chr2 (53-112)||(12556842-12556901)
chr2 (53-112)||(18933151-18933210)
chr2 (301-363)||(13517324-13517385)
chr2 (53-103)||(27748260-27748310)
chr2 (45-111)||(34368684-34368750)
chr2 (63-123)||(23737775-23737835)
chr2 (52-108)||(24089926-24089982)
chr2 (45-109)||(25886895-25886959)
chr2 (313-357)||(29985977-29986021)
[»] chr7 (11 HSPs)
chr7 (53-203)||(12864430-12864587)
chr7 (53-112)||(9891161-9891220)
chr7 (53-125)||(16224757-16224829)
chr7 (61-116)||(5780145-5780200)
chr7 (46-112)||(3586218-3586284)
chr7 (45-108)||(4449995-4450058)
chr7 (57-111)||(8158321-8158374)
chr7 (45-107)||(23297688-23297750)
chr7 (45-106)||(39272166-39272227)
chr7 (52-108)||(8978011-8978067)
chr7 (91-123)||(18202259-18202291)
[»] chr3 (7 HSPs)
chr3 (313-366)||(32197806-32197859)
chr3 (313-363)||(10942490-10942540)
chr3 (146-203)||(7460641-7460698)
chr3 (52-108)||(8882134-8882190)
chr3 (91-123)||(10950530-10950562)
chr3 (54-114)||(25779640-25779700)
chr3 (53-145)||(32466121-32466212)
[»] scaffold0330 (2 HSPs)
scaffold0330 (291-366)||(1308-1383)
scaffold0330 (143-177)||(1165-1199)
[»] scaffold0340 (1 HSPs)
scaffold0340 (53-112)||(16293-16351)
[»] scaffold0056 (1 HSPs)
scaffold0056 (45-108)||(53816-53879)
[»] scaffold0552 (1 HSPs)
scaffold0552 (290-366)||(1570-1646)
[»] scaffold0034 (1 HSPs)
scaffold0034 (52-108)||(81056-81112)


Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 24987796 - 24988164
Alignment:
Q  1 tgtcctcaacatttgttgttagagtatgtttcatttannnnnnnaatttggttttagttaccatgagtaactaaaccctaatcggtcagagttctaagat 100  Q
    |||||||||||||||||||||||||||||||||||||       |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  24987796 tgtcctcaacatttgttgttagagtatgtttcatttatttttttaatttggttttagttagcatgagtaactaaaccctaatcggtcagagttctaagat 24987895  T
Q  101 gaacctctatttgtttattggatcaaataaattcaagttttt-------tatgttttgagatctatttaatttttatatgcaaaggccttaatgttttta 193  Q
    ||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24987896 gaacctctatttgtttattggatcaaataaattcaagtttttatttaattatgttttgagatctatttaatttttatatgcaaaggccttaatgttttta 24987995  T
Q  194 cgaattctagtgaatgtaacatacgtagagtctctgactaattatagaaataggcaactgcaggagatatttttggtcgactttgccaaacgtggtatat 293  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  24987996 cgaattctagtgaatgtaacatatgtagagtctctgactaattatagaaataggcaactgcagcagatatttttggtcgacttttccaaacgtggtatat 24988095  T
Q  294 aaatttgattctttccccatagtaagatagggttaagcctatccatttaatctactaaggacaagtaag 362  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24988096 aaatttgattctttccccatagtaagatagggttaagcctatccatttaatctactaaggacaagtaag 24988164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 177
Target Start/End: Complemental strand, 12565647 - 12565519
Alignment:
Q  56 agttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctatttgtttattggatcaaataaattcaagtttttt--------atgt 147  Q
    ||||| |||||||||||||||| |||| ||  ||  |||||| ||||||||||| |||||| ||||||||| | ||||||||| ||||        ||||    
T  12565647 agttatcatgagtaactaaaccttaattgggtaggattctaaaatgaacctcta-ttgtttcttggatcaatttaattcaagtcttttattcagtcatgt 12565549  T
Q  148 tttgagatctatttaatttttatatgcaaa 177  Q
    |||||||| |||||||||||||||||||||    
T  12565548 tttgagatttatttaatttttatatgcaaa 12565519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 108
Target Start/End: Original strand, 18447607 - 18447670
Alignment:
Q  45 aatttggttttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctct 108  Q
    |||||| |||||||||||||| ||||||||||| |  | ||| |||||||||||||||||||||    
T  18447607 aatttgtttttagttaccatgtgtaactaaacctttttaggttagagttctaagatgaacctct 18447670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 108
Target Start/End: Original strand, 23868535 - 23868598
Alignment:
Q  45 aatttggttttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctct 108  Q
    |||||| |||||||||||||| ||||||||| | |  | ||| |||||||||||||||||||||    
T  23868535 aatttgtttttagttaccatgtgtaactaaatctttttaggttagagttctaagatgaacctct 23868598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 108
Target Start/End: Original strand, 24722669 - 24722732
Alignment:
Q  45 aatttggttttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctct 108  Q
    |||||| |||||||||||||| ||||||||| | |  | ||| |||||||||||||||||||||    
T  24722669 aatttgtttttagttaccatgtgtaactaaatctttttaggttagagttctaagatgaacctct 24722732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 108
Target Start/End: Complemental strand, 25233402 - 25233339
Alignment:
Q  45 aatttggttttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctct 108  Q
    |||||| |||||||||||||| ||||||||| | |  | ||| |||||||||||||||||||||    
T  25233402 aatttgcttttagttaccatgtgtaactaaatctttttaggttagagttctaagatgaacctct 25233339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 108
Target Start/End: Original strand, 29381359 - 29381422
Alignment:
Q  45 aatttggttttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctct 108  Q
    |||||| |||||||||||||| ||||||||| | |  | ||| |||||||||||||||||||||    
T  29381359 aatttgtttttagttaccatgtgtaactaaatctttttaggttagagttctaagatgaacctct 29381422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 29415410 - 29415350
Alignment:
Q  66 agtaactaaaccctaatcggtcagagttctaagatgaacctctatttgtttattggatcaa 126  Q
    ||||||||||||||||| ||  ||  |||| ||||||||||| |||||||| |||||||||    
T  29415410 agtaactaaaccctaattgggtaggattctgagatgaacctcaatttgtttgttggatcaa 29415350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 45 - 362
Target Start/End: Complemental strand, 15858816 - 15858492
Alignment:
Q  45 aatttggttttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctatttgtttattggatcaaataaattcaagtttttta 144  Q
    |||||| || ||||| |||||||||| |||||| |||| ||| || ||| |||||||||| ||||||||||| |||||| |||| |||||||||||||||    
T  15858816 aatttgtttgtagttgccatgagtaattaaaccttaattggtaagggttataagatgaacatctatttgtttgttggataaaattaattcaagtttttta 15858717  T
Q  145 t--------gttttgagatctatttaatttttatatgcaaaggccttaatgtttttacgaattctagtgaatgtaacatacgtagagtctctgactaatt 236  Q
    |        |||||||||||||||||||||||||||||||| || |||||| ||||||||||| ||   |||||  ||||| |||| |||||||||  |     
T  15858716 tttagttatgttttgagatctatttaatttttatatgcaaaagc-ttaatgcttttacgaattttacgaaatgtggcatacctagattctctgactggtc 15858618  T
Q  237 atagaaataggcaactgcaggagatatttttggtcgactttgccaaacgtggtatataaatttgattctttccccatagtaagatagggttaagcctatc 336  Q
    |||||||||      | ||  |||||||| ||||| ||||| || || || | ||||||| || ||||||||| | |||||||||||||||||||||||     
T  15858617 atagaaataaaaggttacataagatatttgtggtctacttttccgaatgttgaatataaactttattctttcctcttagtaagatagggttaagcctatt 15858518  T
Q  337 catttaatctactaaggacaagtaag 362  Q
    ||||||||||||||| || |||||||    
T  15858517 catttaatctactaatgataagtaag 15858492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 53 - 199
Target Start/End: Complemental strand, 36977246 - 36977092
Alignment:
Q  53 tttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctatttgtttattggatcaaataaattcaagttttttat------- 145  Q
    ||||||||||||| |||||||||| |  || | | || |||||| |||||||||||||||  || | || |||||| ||||||||| ||||||           
T  36977246 tttagttaccatgcgtaactaaacacctattgattagggttctatgatgaacctctattttattgtcgggtcaaattaattcaagtcttttattcaatta 36977147  T
Q  146 -gttttgagatctatttaatttttatatgcaaaggccttaatgtttttacgaatt 199  Q
     | |||||||||||||||||||||||||||||| | ||||||| ||||| |||||    
T  36977146 tggtttgagatctatttaatttttatatgcaaaaggcttaatgcttttaagaatt 36977092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 25264882 - 25264823
Alignment:
Q  53 tttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctattt 112  Q
    |||||||||||||||||||||||||||| | ||| || |||| |||||||||||||||||    
T  25264882 tttagttaccatgagtaactaaaccctattaggttagggttcgaagatgaacctctattt 25264823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 228
Target Start/End: Original strand, 36758921 - 36759104
Alignment:
Q  52 ttttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctatttgtttattggatcaaataaattcaagttttttat------ 145  Q
    |||||||||| ||||||||||  |||||||| ||  ||  ||||||||  ||||||||||||| |  || ||||| | ||||||||| ||||||          
T  36758921 ttttagttactatgagtaactttaccctaattgggtaggattctaagacaaacctctatttgtcttatgaatcaatttaattcaagtcttttattcagtt 36759020  T
Q  146 --gttttgagatctatttaatttttatatgcaaaggccttaatgtttttacgaattctagtgaatgtaacatacgtagagtctct 228  Q
      |||||||||| ||||||||||  ||||||||||  ||||||| ||||||||||||||| || ||| |||||| ||||| ||||    
T  36759021 atgttttgagatttatttaatttc-atatgcaaagatcttaatgcttttacgaattctagggagtgtgacatacctagaggctct 36759104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 228
Target Start/End: Original strand, 36759705 - 36759888
Alignment:
Q  52 ttttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctatttgtttattggatcaaataaattcaagttttttat------ 145  Q
    |||||||||| ||||||||||  |||||||| ||  ||  ||||||||  ||||||||||||| |  || ||||| | ||||||||| ||||||          
T  36759705 ttttagttactatgagtaactttaccctaattgggtaggattctaagacaaacctctatttgtcttatgaatcaatttaattcaagtcttttattcagtt 36759804  T
Q  146 --gttttgagatctatttaatttttatatgcaaaggccttaatgtttttacgaattctagtgaatgtaacatacgtagagtctct 228  Q
      |||||||||| ||||||||||  ||||||||||  ||||||| ||||||||||||||| || ||| |||||| ||||| ||||    
T  36759805 atgttttgagatttatttaatttc-atatgcaaagatcttaatgcttttacgaattctagggagtgtgacatacctagaggctct 36759888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 228
Target Start/End: Original strand, 36760488 - 36760671
Alignment:
Q  52 ttttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctatttgtttattggatcaaataaattcaagttttttat------ 145  Q
    |||||||||| ||||||||||  |||||||| ||  ||  ||||||||  ||||||||||||| |  || ||||| | ||||||||| ||||||          
T  36760488 ttttagttactatgagtaactttaccctaattgggtaggattctaagacaaacctctatttgtcttatgaatcaatttaattcaagtcttttattcagtt 36760587  T
Q  146 --gttttgagatctatttaatttttatatgcaaaggccttaatgtttttacgaattctagtgaatgtaacatacgtagagtctct 228  Q
      |||||||||| ||||||||||  ||||||||||  ||||||| ||||||||||||||| || ||| |||||| ||||| ||||    
T  36760588 atgttttgagatttatttaatttc-atatgcaaagatcttaatgcttttacgaattctagggagtgtgacatacctagaggctct 36760671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 228
Target Start/End: Original strand, 36761271 - 36761454
Alignment:
Q  52 ttttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctatttgtttattggatcaaataaattcaagttttttat------ 145  Q
    |||||||||| ||||||||||  |||||||| ||  ||  ||||||||  ||||||||||||| |  || ||||| | ||||||||| ||||||          
T  36761271 ttttagttactatgagtaactttaccctaattgggtaggattctaagacaaacctctatttgtcttatgaatcaatttaattcaagtcttttattcagtt 36761370  T
Q  146 --gttttgagatctatttaatttttatatgcaaaggccttaatgtttttacgaattctagtgaatgtaacatacgtagagtctct 228  Q
      |||||||||| ||||||||||  ||||||||||  ||||||| ||||||||||||||| || ||| |||||| ||||| ||||    
T  36761371 atgttttgagatttatttaatttc-atatgcaaagatcttaatgcttttacgaattctagggagtgtgacatacctagaggctct 36761454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 217
Target Start/End: Complemental strand, 25425682 - 25425548
Alignment:
Q  91 gttctaagatgaacctctatttgtttattggatcaaataaattcaagtttttta--------tgttttgagatctatttaatttttatatgcaaaggcct 182  Q
    |||||||||||||| |||||||  || || ||| |||| |||||||||||||||        ||||||||||| |||||||||||||||| |||| | ||    
T  25425682 gttctaagatgaacatctattttattgtttgataaaattaattcaagttttttactcatttatgttttgagatttatttaatttttatatacaaaagact 25425583  T
Q  183 taatgtttttacgaattctagtgaatgtaacatac 217  Q
    | ||| ||| | ||||||||| || ||||||||||    
T  25425582 tgatgctttcatgaattctagggagtgtaacatac 25425548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 108
Target Start/End: Complemental strand, 20107234 - 20107171
Alignment:
Q  45 aatttggttttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctct 108  Q
    |||||| |||||||||||||| ||||||||||| |  | ||| |||||||||||||||||||||    
T  20107234 aatttgtttttagttaccatgtgtaactaaacctttttaggttagagttctaagatgaacctct 20107171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 228
Target Start/End: Original strand, 36762054 - 36762237
Alignment:
Q  52 ttttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctatttgtttattggatcaaataaattcaagttttttat------ 145  Q
    |||||||||| ||||||||||  |||||||| ||  ||  ||||||||  ||||||||||||| |  || ||||| | ||||||||| ||||||          
T  36762054 ttttagttactatgagtaactttaccctaattgggtaggattctaagacaaacctctatttgtcttatgaatcaatttaattcaagtcttttattcagtt 36762153  T
Q  146 --gttttgagatctatttaatttttatatgcaaaggccttaatgtttttacgaattctagtgaatgtaacatacgtagagtctct 228  Q
      |||||||||| ||||||||||  ||||||||||  ||||||| ||||||||||| ||| || ||| |||||| ||||| ||||    
T  36762154 atgttttgagatttatttaatttc-atatgcaaagatcttaatgcttttacgaattttagggagtgtgacatacctagaggctct 36762237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 228
Target Start/End: Original strand, 36766268 - 36766451
Alignment:
Q  52 ttttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctatttgtttattggatcaaataaattcaagttttttat------ 145  Q
    |||||||||| ||||||||||  |||||||| ||  ||  ||||||||  ||||||||||||| |  || ||||| | ||||||||| ||||||          
T  36766268 ttttagttactatgagtaactttaccctaattgggtaggattctaagacaaacctctatttgtcttatgaatcaatttaattcaagtcttttattcagtt 36766367  T
Q  146 --gttttgagatctatttaatttttatatgcaaaggccttaatgtttttacgaattctagtgaatgtaacatacgtagagtctct 228  Q
      |||||||||| ||||||||||  ||||||||||  ||||||| ||||||||||| ||| || ||| |||||| ||||| ||||    
T  36766368 atgttttgagatttatttaatttc-atatgcaaagatcttaatgcttttacgaattttagggagtgtgacatacctagaggctct 36766451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 8987004 - 8986934
Alignment:
Q  53 tttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctatttgtttattggat 123  Q
    |||| ||||||||||||||||||| |||   ||  ||||||||||||||||||||||||| ||| ||||||    
T  8987004 tttaattaccatgagtaactaaactctataagggtagagttctaagatgaacctctatttatttgttggat 8986934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 108
Target Start/End: Original strand, 18735251 - 18735314
Alignment:
Q  45 aatttggttttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctct 108  Q
    |||||| |||||||||||||| ||||||||| | |  | ||| |||||||||||||||||||||    
T  18735251 aatttgtttttagttaccatgtgtaactaaatctttttaggttagagttctaagatgaacctct 18735314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 27910270 - 27910211
Alignment:
Q  53 tttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctattt 112  Q
    ||||||||||||||||||||||||| || | ||  || ||| ||||||||||||||||||    
T  27910270 tttagttaccatgagtaactaaaccatattagggtagggttgtaagatgaacctctattt 27910211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 34104287 - 34104229
Alignment:
Q  53 tttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctattt 112  Q
    |||||||||||||| ||||||||||||| | ||| ||| ||||||||| |||||||||||    
T  34104287 tttagttaccatgaataactaaaccctattgggt-agaattctaagataaacctctattt 34104229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 145
Target Start/End: Complemental strand, 10825795 - 10825707
Alignment:
Q  56 agttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctatttgtttattggatcaaataaattcaagttttttat 145  Q
    ||||| |||||||||||||||||| || ||  ||  ||||||||||||||||||||| ||  |||||||   | ||||||||||||||||    
T  10825795 agttatcatgagtaactaaaccctcattgggtaggattctaagatgaacctctatttattcgttggatc-ttttaattcaagttttttat 10825707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 21983732 - 21983793
Alignment:
Q  45 aatttggttttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacct 106  Q
    |||||| |||||||||||||| ||||||||| | |  | ||| |||||||||||||||||||    
T  21983732 aatttgtttttagttaccatgtgtaactaaatctttttaggttagagttctaagatgaacct 21983793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 22623994 - 22623933
Alignment:
Q  45 aatttggttttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacct 106  Q
    |||||| |||||||||||||  ||||||||||| |  | ||| |||||||||||||||||||    
T  22623994 aatttgtttttagttaccatatgtaactaaacctttttaggttagagttctaagatgaacct 22623933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 18831565 - 18831509
Alignment:
Q  52 ttttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctct 108  Q
    |||||||||||||| ||||||||| | |  | ||| |||||||||||||||||||||    
T  18831565 ttttagttaccatgtgtaactaaatctttttaggttagagttctaagatgaacctct 18831509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 20033821 - 20033853
Alignment:
Q  45 aatttggttttagttaccatgagtaactaaacc 77  Q
    |||||| ||||||||||||||||||||||||||    
T  20033821 aatttgtttttagttaccatgagtaactaaacc 20033853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 52 - 177
Target Start/End: Complemental strand, 24320004 - 24319870
Alignment:
Q  52 ttttagttaccatgagtaactaaaccctaatcggtcag-agttctaagatgaacctctatttgtttattggatcaaataaattcaagtttttt------- 143  Q
    |||||| || ||||||||||||||| ||||| ||| || ||||||||||||||||||||||| ||| |||||| ||||  |||||||  ||||           
T  24320004 ttttaggtaacatgagtaactaaactctaattggttaggagttctaagatgaacctctatttatttgttggataaaattcattcaagacttttattcatt 24319905  T
Q  144 -atgttttgagatctatttaatttttatatgcaaa 177  Q
     ||||||||||||||||||||||||||||||||||    
T  24319904 catgttttgagatctatttaatttttatatgcaaa 24319870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 177
Target Start/End: Complemental strand, 13174923 - 13174888
Alignment:
Q  142 ttatgttttgagatctatttaatttttatatgcaaa 177  Q
    ||||||||||||||||||||||||||||||||||||    
T  13174923 ttatgttttgagatctatttaatttttatatgcaaa 13174888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 14726550 - 14726483
Alignment:
Q  45 aatttggttttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctattt 112  Q
    |||||| |||||||||||||||||||||||| |||  | ||  || ||||||||||||||||||||||    
T  14726550 aatttgtttttagttaccatgagtaactaaatccttttaggctagtgttctaagatgaacctctattt 14726483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 13183458 - 13183413
Alignment:
Q  142 ttatgttttgagatctatttaatttttatatgcaaaggccttaatg 187  Q
    |||||||||| ||||||||||||||||||||||||| | |||||||    
T  13183458 ttatgttttgtgatctatttaatttttatatgcaaaaggcttaatg 13183413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 177
Target Start/End: Complemental strand, 13155324 - 13155288
Alignment:
Q  141 tttatgttttgagatctatttaatttttatatgcaaa 177  Q
    ||||||||||||| |||||||||||||||||||||||    
T  13155324 tttatgttttgagttctatttaatttttatatgcaaa 13155288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 177
Target Start/End: Complemental strand, 13160180 - 13160144
Alignment:
Q  141 tttatgttttgagatctatttaatttttatatgcaaa 177  Q
    ||||||||||||| |||||||||||||||||||||||    
T  13160180 tttatgttttgagttctatttaatttttatatgcaaa 13160144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 1636063 - 1635996
Alignment:
Q  45 aatttggttttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctattt 112  Q
    |||||| ||||||||||| || ||||||||| |||  | ||| ||||||||| |||||||||||||||    
T  1636063 aatttgtttttagttaccgtgtgtaactaaatcctttttggttagagttctacgatgaacctctattt 1635996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 138
Target Start/End: Complemental strand, 34395094 - 34395008
Alignment:
Q  52 ttttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctatttgtttattggatcaaataaattcaagt 138  Q
    |||| |||||||||||||||||||| |  || | | || |||||||||||||| ||||||||||| ||| ||  |||||| ||||||    
T  34395094 ttttggttaccatgagtaactaaacgcctattgattagggttctaagatgaacttctatttgtttgttgaatttaataaaatcaagt 34395008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 13206818 - 13206778
Alignment:
Q  163 atttttatatgcaaaggccttaatgtttttacgaattctag 203  Q
    ||||||||||||||||| ||||||| ||| |||||||||||    
T  13206818 atttttatatgcaaagggcttaatgctttcacgaattctag 13206778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 366
Target Start/End: Complemental strand, 34394849 - 34394774
Alignment:
Q  290 atataaatttgattctttccccatagtaagatagggttaagcctatccatttaatctactaaggacaagtaagggta 366  Q
    |||||||||| ||| ||| ||| ||||||||||  ||||  | |||||||||||||||||| |||||| ||||||||    
T  34394849 atataaattt-attattttcccttagtaagataaagttagacttatccatttaatctactagggacaaataagggta 34394774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 45 - 145
Target Start/End: Original strand, 29566770 - 29566870
Alignment:
Q  45 aatttggttttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctatttgtttattggatcaaataaattcaagtttttta 144  Q
    |||||| ||||||| | ||||||| |||||| |||||| | | || || ||||||||||||||||||||||| ||||||||| | |||||||||||||||    
T  29566770 aatttgtttttagtcatcatgagtgactaaaacctaattgattagggtcctaagatgaacctctatttgtttgttggatcaatttaattcaagtttttta 29566869  T
Q  145 t 145  Q
    |    
T  29566870 t 29566870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 198
Target Start/End: Original strand, 6457015 - 6457162
Alignment:
Q  58 ttaccatgagtaactaaaccctaa-tcggtcagagttctaagatgaacctctatttgtttattggatcaaataaattcaagtttt-------ttatgttt 149  Q
    ||||||||||||||||||| |||| | ||| ||| ||||||||||||||||||||||||| | ||||||| | ||||||||||||       |||| ||     
T  6457015 ttaccatgagtaactaaactctaactaggt-agaattctaagatgaacctctatttgtttgtcggatcaatttaattcaagtttttattcagttatttta 6457113  T
Q  150 tgagatctatttaatttttatatgcaaaggccttaatgtttttacgaat 198  Q
     ||||| ||||||| ||||||||||||| || |||||| ||||| ||||    
T  6457114 agagatttatttaaattttatatgcaaaagctttaatgcttttaggaat 6457162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 29566985 - 29567036
Alignment:
Q  307 tccccatagtaagatagggttaagcctatccatttaatctactaaggacaag 358  Q
    ||||| |||||||||| | |||||||||||||||||||||||||||||||||    
T  29566985 tccccttagtaagataagattaagcctatccatttaatctactaaggacaag 29567036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 52 - 186
Target Start/End: Complemental strand, 30242513 - 30242376
Alignment:
Q  52 ttttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctatttgtttattggatcaaataaattcaagttttt------tat 145  Q
    |||||| ||| |||||||||||||||||||| | | || ||||||| |||| ||||||||||||  || |||||||| |||| |||| |||      |||    
T  30242513 ttttaggtactatgagtaactaaaccctaattgattagggttctaatatgatcctctatttgtt--ttcgatcaaattaatt-aagtctttctacaatat 30242417  T
Q  146 gttttgagatctatttaatttttatatgcaaaggccttaat 186  Q
     |||||| ||||| |||||||||||||||||||| ||||||    
T  30242416 attttgaaatctaattaatttttatatgcaaaggtcttaat 30242376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 145
Target Start/End: Complemental strand, 48747698 - 48747622
Alignment:
Q  68 taactaaaccctaatcggtcagagttctaagatgaacctctatttgtttattggatcaaataaattcaagttttttat 145  Q
    ||||||||||||||| |||  ||||||||||| |||||||||||||||| || |||||| | ||||||||| ||||||    
T  48747698 taactaaaccctaattggtttgagttctaaga-gaacctctatttgtttgtttgatcaatttaattcaagtcttttat 48747622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 116
Target Start/End: Original strand, 19084595 - 19084658
Alignment:
Q  53 tttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctatttgttt 116  Q
    |||||||| ||||||||   |||||||||| || |||| |||||||||||||||||||||||||    
T  19084595 tttagttagcatgagtagacaaaccctaattgggcagaattctaagatgaacctctatttgttt 19084658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 17263594 - 17263520
Alignment:
Q  142 ttatgttttgagatctatttaatttttatatgcaaaggccttaatgtttttacgaattctagtgaatgtaacata 216  Q
    |||||||||||||||| ||||||||| ||||||||| | ||||||  ||| ||||||||||| || ||| |||||    
T  17263594 ttatgttttgagatctttttaattttaatatgcaaatggcttaattctttcacgaattctagggagtgtgacata 17263520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 18746462 - 18746516
Alignment:
Q  91 gttctaagatgaacctctatttgtttattggatcaaataaattcaagttttttat 145  Q
    |||||||||||||||| | ||||||| ||||||||||| ||||||||| ||||||    
T  18746462 gttctaagatgaacctttctttgtttgttggatcaaattaattcaagtcttttat 18746516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 290 - 366
Target Start/End: Complemental strand, 17263451 - 17263374
Alignment:
Q  290 atataaatttgattctttc-cccatagtaagatagggttaagcctatccatttaatctactaaggacaagtaagggta 366  Q
    |||||||||| ||| |||| ||| |||||||||||| ||| ||| ||||||||||||||||| |||| || |||||||    
T  17263451 atataaatttcattatttctcccttagtaagataggtttaggcccatccatttaatctactagggactagcaagggta 17263374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 366
Target Start/End: Original strand, 6764358 - 6764434
Alignment:
Q  290 atataaatttgattctttccccatagtaagatagggttaagcctatccatttaatctactaaggacaagtaagggta 366  Q
    ||||||| || |||||||| || |||||||||| ||||| || | | | ||||||||||||||||| ||||||||||    
T  6764358 atataaactttattctttctccttagtaagataaggttaggcatgttcttttaatctactaaggaccagtaagggta 6764434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 28571906 - 28571866
Alignment:
Q  316 taagatagggttaagcctatccatttaatctactaaggaca 356  Q
    ||||||||||||| |||||||||||||||||||||| ||||    
T  28571906 taagatagggttaggcctatccatttaatctactaatgaca 28571866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 108
Target Start/End: Complemental strand, 7583398 - 7583335
Alignment:
Q  45 aatttggttttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctct 108  Q
    |||||| |||||||||||||| ||||||||| | |  | ||| |||||||||||||||||||||    
T  7583398 aatttgtttttagttaccatgtgtaactaaatctttttaggttagagttctaagatgaacctct 7583335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 7613120 - 7613061
Alignment:
Q  53 tttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctattt 112  Q
    ||||||||||||||||||||||||| || | ||  |  ||||||||||||||||||||||    
T  7613120 tttagttaccatgagtaactaaaccttattagggtatggttctaagatgaacctctattt 7613061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 88 - 119
Target Start/End: Original strand, 22344311 - 22344342
Alignment:
Q  88 agagttctaagatgaacctctatttgtttatt 119  Q
    ||||||||||||||||||||||||||||||||    
T  22344311 agagttctaagatgaacctctatttgtttatt 22344342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 18746687 - 18746724
Alignment:
Q  313 tagtaagatagggttaagcctatccatttaatctacta 350  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  18746687 tagtaagatggggttacgcctatccatttaatctacta 18746724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 345
Target Start/End: Complemental strand, 12880232 - 12880200
Alignment:
Q  313 tagtaagatagggttaagcctatccatttaatc 345  Q
    |||||||||||||||||||||| ||||||||||    
T  12880232 tagtaagatagggttaagcctacccatttaatc 12880200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 363
Target Start/End: Original strand, 25025323 - 25025370
Alignment:
Q  315 gtaagatagggttaagcctatccatttaatctactaaggacaagtaagg 363  Q
    ||||||||| |||  |||||||||||||||||||| |||||||||||||    
T  25025323 gtaagatagagttgggcctatccatttaatctact-aggacaagtaagg 25025370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 145
Target Start/End: Original strand, 29245104 - 29245196
Alignment:
Q  53 tttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctatttgtttattggatcaaataaattcaagttttttat 145  Q
    ||||||||||||||||||||||  |||||| |   ||  |||||| |||||||| | |||||||||||||||   | ||||||||| ||||||    
T  29245104 tttagttaccatgagtaactaagtcctaattgtgtaggattctaatatgaacctttgtttgtttattggatctttttaattcaagtattttat 29245196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 20103615 - 20103698
Alignment:
Q  52 ttttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctatttgtttattggatcaaataaattca 135  Q
    ||||||||||||||||||||||||||||||| |   ||  ||||||||||||||||| ||||||||||||||||| | ||||||    
T  20103615 ttttagttaccatgagtaactaaaccctaattgagtaggcttctaagatgaacctctgtttgtttattggatcaatttaattca 20103698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 53 - 145
Target Start/End: Complemental strand, 18751402 - 18751310
Alignment:
Q  53 tttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctatttgtttattggatcaaataaattcaagttttttat 145  Q
    |||||||||||||||||||||||||||||| ||  ||  ||||||||| ||||||||||||||| || ||||   ||||||||||| ||||||    
T  18751402 tttagttaccatgagtaactaaaccctaattggataggattctaagataaacctctatttgtttgttagatcttttaaattcaagtattttat 18751310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 45 - 138
Target Start/End: Original strand, 15609583 - 15609676
Alignment:
Q  45 aatttggttttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctatttgtttattggatcaaataaattcaagt 138  Q
    |||||| |||| |||||||||||||| |||| |||||| ||  ||| ||||||||||||||| |||||| || ||||||||| | |||||||||    
T  15609583 aatttgtttttggttaccatgagtaagtaaatcctaattgggtagaattctaagatgaacctatatttgcttgttggatcaatttaattcaagt 15609676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 189
Target Start/End: Complemental strand, 18807674 - 18807569
Alignment:
Q  91 gttctaagatgaacctctatttgtttattggatcaaataaattcaagttttttat--------gttttgagatctatttaatttttatatgcaaaggcct 182  Q
    ||||||||||||||||||||| |||| ||||||||||| |||| |||| ||||||        |||||||||||| | ||||||||||||||||| | ||    
T  18807674 gttctaagatgaacctctatt-gtttgttggatcaaattaatttaagtcttttattcagttatgttttgagatctttataatttttatatgcaaatgtct 18807576  T
Q  183 taatgtt 189  Q
    |||||||    
T  18807575 taatgtt 18807569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 61 - 145
Target Start/End: Complemental strand, 18044035 - 18043951
Alignment:
Q  61 ccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctatttgtttattggatcaaataaattcaagttttttat 145  Q
    |||||||||| || |||||||| ||  || ||||| |||||| ||||||||||||| ||||||||| | ||||||||| ||||||    
T  18044035 ccatgagtaattataccctaattgggtagggttcttagatgatcctctatttgttttttggatcaatttaattcaagtcttttat 18043951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 217
Target Start/End: Original strand, 27247877 - 27247951
Alignment:
Q  143 tatgttttgagatctatttaatttttatatgcaaaggccttaatgtttttacgaattctagtgaatgtaacatac 217  Q
    ||||||| |||||| | |||||||||||||||||||  ||||||| ||| | ||||||||| |||||| ||||||    
T  27247877 tatgtttagagatcgacttaatttttatatgcaaagagcttaatgctttcatgaattctagagaatgtgacatac 27247951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 313 - 366
Target Start/End: Original strand, 27248007 - 27248060
Alignment:
Q  313 tagtaagatagggttaagcctatccatttaatctactaaggacaagtaagggta 366  Q
    ||||||||||| |||  ||||||||||||||||| |||||||||||| ||||||    
T  27248007 tagtaagatagtgttgggcctatccatttaatcttctaaggacaagttagggta 27248060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 26270516 - 26270460
Alignment:
Q  142 ttatgttttgagatctatttaatttttatatgcaaaggccttaatgtttttacgaat 198  Q
    ||||||| ||||||||||||||||||||||||||||   ||||||| ||||| ||||    
T  26270516 ttatgttgtgagatctatttaatttttatatgcaaaaatcttaatgcttttaagaat 26270460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 17336958 - 17337025
Alignment:
Q  45 aatttggttttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctattt 112  Q
    |||||| ||||||||||| ||| ||||||||||||| | ||  || |||||||||| |||||||||||    
T  17336958 aatttgtttttagttaccttgaataactaaaccctattagggtagggttctaagataaacctctattt 17337025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 108
Target Start/End: Complemental strand, 28665863 - 28665800
Alignment:
Q  45 aatttggttttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctct 108  Q
    |||||| |||||||||||||| ||||||||| | |  | ||| |||||||||||||||||||||    
T  28665863 aatttgattttagttaccatgtgtaactaaatctttttaggttagagttctaagatgaacctct 28665800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 19964265 - 19964207
Alignment:
Q  142 ttatgttttgagatctatttaatttttatatgcaaaggccttaatgtttttacgaattc 200  Q
    ||||||||||| ||| ||||||||||||||| |||||| ||||||  ||| ||||||||    
T  19964265 ttatgttttgatatcgatttaatttttatattcaaagggcttaatactttcacgaattc 19964207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 217
Target Start/End: Complemental strand, 4451029 - 4450849
Alignment:
Q  45 aatttggttttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctatttgtttattggatcaaataaattcaagtttttta 144  Q
    |||||| ||||| ||| ||||||||||||||| ||  |   | | |||| |||||||||| | |||||| || ||||||||||| ||||||||| |||||    
T  4451029 aatttgtttttaattatcatgagtaactaaactctggttaattaaagttttaagatgaacatttatttgcttgttggatcaaattaattcaagtatttta 4450930  T
Q  145 t--------gttttgagatctatttaatttttatatgcaaaggccttaatgtttttacgaattctagtgaatgtaacatac 217  Q
    |        |||||||||||||||||||||||||||||||||  |||| || ||| ||||||||||| || ||| ||||||    
T  4450929 ttcagttatgttttgagatctatttaatttttatatgcaaagctcttactgctttcacgaattctagagagtgtgacatac 4450849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 289 - 347
Target Start/End: Complemental strand, 4450780 - 4450722
Alignment:
Q  289 tatataaatttgattctttccccatagtaagatagggttaagcctatccatttaatcta 347  Q
    ||||||||||| |||| |||||| |||||||||||||||| ||||||||||||||||||    
T  4450780 tatataaattttattcattccccttagtaagatagggttaggcctatccatttaatcta 4450722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 8446224 - 8446283
Alignment:
Q  53 tttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctattt 112  Q
    ||||||||||||||| |||||||||||||| ||  |||||| ||||||||||||||||||    
T  8446224 tttagttaccatgagcaactaaaccctaatagggtagagttttaagatgaacctctattt 8446283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 142 - 226
Target Start/End: Original strand, 29985840 - 29985924
Alignment:
Q  142 ttatgttttgagatctatttaatttttatatgcaaaggccttaatgtttttacgaattctagtgaatgtaacatacgtagagtct 226  Q
    |||| ||||||||||||||||||||||||| |||||   ||||||| ||||||| ||||||| ||  || |||||| ||||||||    
T  29985840 ttatattttgagatctatttaatttttataagcaaatatcttaatgcttttacgtattctagagagggtgacatacctagagtct 29985924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 187
Target Start/End: Complemental strand, 32620497 - 32620451
Alignment:
Q  141 tttatgttttgagatctatttaatttttatatgcaaaggccttaatg 187  Q
    ||||||||||||||| ||||||||||||||||||||| | |||||||    
T  32620497 tttatgttttgagatttatttaatttttatatgcaaaagtcttaatg 32620451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 61 - 187
Target Start/End: Complemental strand, 12529975 - 12529841
Alignment:
Q  61 ccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctatttgtttattggatcaaataaattcaagttttttatgt--------tttga 152  Q
    ||||| ||||||||||||||||  |  |  ||||| |||||||||||| ||| | ||||||||||| | ||||||||| |||||| |        | |||    
T  12529975 ccatgtgtaactaaaccctaattaggtatggttcttagatgaacctctctttatctattggatcaatttaattcaagtcttttatttagttattttatga 12529876  T
Q  153 gatctatttaatttttatatgcaaaggccttaatg 187  Q
    ||||||||||||||||||||||||| | |||||||    
T  12529875 gatctatttaatttttatatgcaaaagtcttaatg 12529841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 52 - 145
Target Start/End: Original strand, 41669606 - 41669698
Alignment:
Q  52 ttttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctatttgtttattggatcaaataaattcaagttttttat 145  Q
    ||||||||||||||||||||||||||||||| ||  | | || |||||||||||||||||| ||| ||| |||   | ||||||||| ||||||    
T  41669606 ttttagttaccatgagtaactaaaccctaattggata-aattgtaagatgaacctctatttatttgttgaatctttttaattcaagtcttttat 41669698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 12556842 - 12556901
Alignment:
Q  53 tttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctattt 112  Q
    |||||||||||||||||||||||||||| | ||   | |||||||||||||| |||||||    
T  12556842 tttagttaccatgagtaactaaaccctattagggtggggttctaagatgaacttctattt 12556901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 18933210 - 18933151
Alignment:
Q  53 tttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctattt 112  Q
    ||||||||||||| ||||||||| |||| | ||  || ||||||||||||||||||||||    
T  18933210 tttagttaccatgggtaactaaagcctattagggtagggttctaagatgaacctctattt 18933151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 363
Target Start/End: Original strand, 13517324 - 13517385
Alignment:
Q  301 attctttccccatagtaagatagggttaagcctatccatttaatctactaaggacaagtaagg 363  Q
    ||||||| ||| |||||||||| | ||| ||||||||| ||||||||||| ||||||||||||    
T  13517324 attcttttcccgtagtaagatatgattaggcctatcca-ttaatctactagggacaagtaagg 13517385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 27748260 - 27748310
Alignment:
Q  53 tttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaa 103  Q
    |||||||||||||||||||||||||||||| ||  ||  ||||||||||||    
T  27748260 tttagttaccatgagtaactaaaccctaattgggtaggattctaagatgaa 27748310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 34368750 - 34368684
Alignment:
Q  45 aatttggttttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctatt 111  Q
    |||||| |||||||||||||||||||||||||| |  | ||  ||| ||||||||| ||||||||||    
T  34368750 aatttgtttttagttaccatgagtaactaaacctttttaggctagaattctaagataaacctctatt 34368684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 23737835 - 23737775
Alignment:
Q  63 atgagtaactaaaccctaatcggtcagagttctaagatgaacctctatttgtttattggat 123  Q
    ||||||||||||||||||||  | ||| ||| ||||| |||||| ||||||||| ||||||    
T  23737835 atgagtaactaaaccctaattagacagggttataagacgaacctttatttgtttgttggat 23737775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 24089926 - 24089982
Alignment:
Q  52 ttttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctct 108  Q
    |||||||||||||| ||||||||| | |  | ||| |||||||||||||||||||||    
T  24089926 ttttagttaccatgtgtaactaaatctttttaggttagagttctaagatgaacctct 24089982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 25886895 - 25886959
Alignment:
Q  45 aatttggttttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctcta 109  Q
    |||||| |||||||||||||| ||||||||  | |  | ||| ||||||||||||||||||||||    
T  25886895 aatttgtttttagttaccatgtgtaactaattctttttaggttagagttctaagatgaacctcta 25886959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 357
Target Start/End: Original strand, 29985977 - 29986021
Alignment:
Q  313 tagtaagatagggttaagcctatccatttaatctactaaggacaa 357  Q
    |||||||||||||||   |||||||||||| ||||||||||||||    
T  29985977 tagtaagatagggttggacctatccatttattctactaaggacaa 29986021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 53 - 203
Target Start/End: Complemental strand, 12864587 - 12864430
Alignment:
Q  53 tttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctatttgtttattggatcaaataaattcaagtttttta-------- 144  Q
    ||||||| |||||||||||||||| ||||| ||| |   ||||||||| || |||||||||||| ||| ||||| |  |||||||| |||||            
T  12864587 tttagttgccatgagtaactaaactctaataggttatgattctaagataaaactctatttgtttgttgaatcaatttgattcaagtcttttaatcagttt 12864488  T
Q  145 tgttttgagatctatttaatttttatatgcaaaggccttaatgtttttacgaattctag 203  Q
    ||||||||||||||||||||| | ||||||||||| ||||||| | |||||||||||||    
T  12864487 tgttttgagatctatttaattgt-atatgcaaaggtcttaatgctcttacgaattctag 12864430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 9891220 - 9891161
Alignment:
Q  53 tttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctattt 112  Q
    |||||||||||||||||||||||||||| | ||  || ||||||||||||||||||||||    
T  9891220 tttagttaccatgagtaactaaaccctattaggatagggttctaagatgaacctctattt 9891161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 53 - 125
Target Start/End: Original strand, 16224757 - 16224829
Alignment:
Q  53 tttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctatttgtttattggatca 125  Q
    ||||||||| |||||||||||||||||||| ||   ||||| ||| ||||||||| |||||||| ||||||||    
T  16224757 tttagttactatgagtaactaaaccctaattgggtggagttataatatgaacctcaatttgtttgttggatca 16224829  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 5780200 - 5780145
Alignment:
Q  61 ccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctatttgttt 116  Q
    |||||||||| ||||||||||| ||  || ||||||||||||||||||||||||||    
T  5780200 ccatgagtaaataaaccctaattgggtagggttctaagatgaacctctatttgttt 5780145  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 112
Target Start/End: Original strand, 3586218 - 3586284
Alignment:
Q  46 atttggttttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctattt 112  Q
    ||||| |||||||||||||| ||||||||| | |  | ||| |||||||||||||||||||||||||    
T  3586218 atttgtttttagttaccatgtgtaactaaatctttttaggttagagttctaagatgaacctctattt 3586284  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 108
Target Start/End: Complemental strand, 4450058 - 4449995
Alignment:
Q  45 aatttggttttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctct 108  Q
    |||||| |||||||||||||| ||||||||| | |  | ||| |||||||||||||||||||||    
T  4450058 aatttgtttttagttaccatgtgtaactaaatctttttaggttagagttctaagatgaacctct 4449995  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 8158374 - 8158321
Alignment:
Q  57 gttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctatt 111  Q
    |||||||||||||||||||||||| | ||| || ||| |||||||||||||||||    
T  8158374 gttaccatgagtaactaaaccctatttggt-agggttttaagatgaacctctatt 8158321  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 23297750 - 23297688
Alignment:
Q  45 aatttggttttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctc 107  Q
    |||||| |||||||||||||| ||||||||| | |  | ||| ||||||||||||||||||||    
T  23297750 aatttgtttttagttaccatgtgtaactaaatctttttaggttagagttctaagatgaacctc 23297688  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 39272166 - 39272227
Alignment:
Q  45 aatttggttttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacct 106  Q
    |||||| |||||||||||||| ||||||||| | |  | ||| |||||||||||||||||||    
T  39272166 aatttgtttttagttaccatgtgtaactaaatctttttaggttagagttctaagatgaacct 39272227  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 8978011 - 8978067
Alignment:
Q  52 ttttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctct 108  Q
    |||||||||||||| ||||||||| | |  | ||| |||||||||||||||||||||    
T  8978011 ttttagttaccatgtgtaactaaatctttttaggttagagttctaagatgaacctct 8978067  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 18202259 - 18202291
Alignment:
Q  91 gttctaagatgaacctctatttgtttattggat 123  Q
    |||||||||||||||||||||||||| ||||||    
T  18202259 gttctaagatgaacctctatttgtttgttggat 18202291  T

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Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 313 - 366
Target Start/End: Complemental strand, 32197859 - 32197806
Alignment:
Q  313 tagtaagatagggttaagcctatccatttaatctactaaggacaagtaagggta 366  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  32197859 tagtaagatagggttaggcctatccatttaatccactaaggacaagtaagggta 32197806  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 363
Target Start/End: Complemental strand, 10942540 - 10942490
Alignment:
Q  313 tagtaagatagggttaagcctatccatttaatctactaaggacaagtaagg 363  Q
    ||||| |||| ||||| ||||||||||||||||||||| ||||||||||||    
T  10942540 tagtaggataaggttaggcctatccatttaatctactagggacaagtaagg 10942490  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 203
Target Start/End: Original strand, 7460641 - 7460698
Alignment:
Q  146 gttttgagatctatttaatttttatatgcaaaggccttaatgtttttacgaattctag 203  Q
    |||||||||||||||||| ||||||||||| | | || |||| ||||| |||||||||    
T  7460641 gttttgagatctatttaaattttatatgcacaagtctgaatgcttttatgaattctag 7460698  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 8882134 - 8882190
Alignment:
Q  52 ttttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctct 108  Q
    |||||||||||||| ||||||||| | |  | ||| |||||||||||||||||||||    
T  8882134 ttttagttaccatgtgtaactaaatctttttaggttagagttctaagatgaacctct 8882190  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 123
Target Start/End: Complemental strand, 10950562 - 10950530
Alignment:
Q  91 gttctaagatgaacctctatttgtttattggat 123  Q
    |||||||||||||||||||||||||| ||||||    
T  10950562 gttctaagatgaacctctatttgtttgttggat 10950530  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 25779640 - 25779700
Alignment:
Q  54 ttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctatttgt 114  Q
    ||||||||||||||| ||||||||||||| |   ||| ||||||||| ||| |||||||||    
T  25779640 ttagttaccatgagttactaaaccctaattgagtagaattctaagataaacatctatttgt 25779700  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 145
Target Start/End: Original strand, 32466121 - 32466212
Alignment:
Q  53 tttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctatttgtttattggatcaaataaattcaagttttttat 145  Q
    ||||||| |||||| ||||||||||||||| ||  || |||| ||||||||||| | | | ||| ||||||||| | ||||||||| ||||||    
T  32466121 tttagttgccatgaataactaaaccctaattggatag-gttccaagatgaacctttgtctctttgttggatcaatttaattcaagtcttttat 32466212  T

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Target: scaffold0330 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 366
Target Start/End: Original strand, 1308 - 1383
Alignment:
Q  291 tataaatttgattctttccccatagtaagatagggttaagcctatccatttaatctactaaggacaagtaagggta 366  Q
    |||||| || ||||||| ||| ||||||||||  |||| ||||||||||||||||||| | |||||| ||||||||    
T  1308 tataaactttattcttttcccttagtaagataaagttaggcctatccatttaatctaccatggacaattaagggta 1383  T

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Target: scaffold0330; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 177
Target Start/End: Original strand, 1165 - 1199
Alignment:
Q  143 tatgttttgagatctatttaatttttatatgcaaa 177  Q
    |||||||||||||||||||||||||| ||||||||    
T  1165 tatgttttgagatctatttaatttttgtatgcaaa 1199  T

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Target: scaffold0340 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 16351 - 16293
Alignment:
Q  53 tttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctctattt 112  Q
    |||||||| ||||||||||||||||||||| ||  || |||||| |||||||||||||||    
T  16351 tttagttagcatgagtaactaaaccctaattgggtag-gttctaggatgaacctctattt 16293  T

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Target: scaffold0056 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 108
Target Start/End: Complemental strand, 53879 - 53816
Alignment:
Q  45 aatttggttttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctct 108  Q
    |||||| |||||||||||||| ||||||||| | |  | ||| |||||||||||||||||||||    
T  53879 aatttgtttttagttaccatgtgtaactaaatctttttaggttagagttctaagatgaacctct 53816  T

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Target: scaffold0552 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 366
Target Start/End: Complemental strand, 1646 - 1570
Alignment:
Q  290 atataaatttgattctttccccatagtaagatagggttaagcctatccatttaatctactaaggacaagtaagggta 366  Q
    ||||||| || |||||||| || |||||||||| ||||| || | | | ||||||||||||||||| | ||||||||    
T  1646 atataaactttattctttctccttagtaagataaggttaggcatgttcttttaatctactaaggaccantaagggta 1570  T

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Target: scaffold0034 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 81112 - 81056
Alignment:
Q  52 ttttagttaccatgagtaactaaaccctaatcggtcagagttctaagatgaacctct 108  Q
    |||||||||||||| ||||||||| | |  | ||| |||||||||||||||||||||    
T  81112 ttttagttaccatgtgtaactaaatctttttaggttagagttctaagatgaacctct 81056  T

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