View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14480_low_27 (Length: 272)

Name: NF14480_low_27
Description: NF14480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14480_low_27
NF14480_low_27
[»] chr1 (7 HSPs)
chr1 (116-201)||(45428359-45428443)
chr1 (125-201)||(45427918-45427995)
chr1 (244-272)||(13574051-13574079)
chr1 (244-272)||(25068379-25068407)
chr1 (244-272)||(25813076-25813104)
chr1 (244-272)||(41322187-41322215)
chr1 (244-272)||(52505966-52505994)
[»] chr2 (6 HSPs)
chr2 (166-201)||(12172619-12172654)
chr2 (244-272)||(551880-551908)
chr2 (244-272)||(20893258-20893286)
chr2 (244-272)||(35899810-35899838)
chr2 (244-272)||(38973136-38973164)
chr2 (244-272)||(43657584-43657612)
[»] chr5 (7 HSPs)
chr5 (166-199)||(1277675-1277708)
chr5 (167-200)||(41462827-41462860)
chr5 (244-272)||(1198486-1198514)
chr5 (244-272)||(4055400-4055428)
chr5 (244-272)||(20691169-20691197)
chr5 (244-272)||(24624872-24624900)
chr5 (244-272)||(37657436-37657464)
[»] chr8 (5 HSPs)
chr8 (166-201)||(16218718-16218753)
chr8 (244-272)||(8297156-8297184)
chr8 (244-272)||(10215509-10215537)
chr8 (244-272)||(25597830-25597858)
chr8 (244-272)||(44147519-44147547)
[»] chr3 (11 HSPs)
chr3 (166-201)||(24693663-24693698)
chr3 (173-201)||(1690939-1690967)
chr3 (244-272)||(10888395-10888423)
chr3 (244-272)||(11056551-11056579)
chr3 (244-272)||(14601482-14601510)
chr3 (244-272)||(22130388-22130416)
chr3 (244-272)||(22524792-22524820)
chr3 (244-272)||(23308993-23309021)
chr3 (244-272)||(24542367-24542395)
chr3 (244-272)||(37183751-37183779)
chr3 (244-272)||(41865034-41865062)
[»] scaffold0460 (1 HSPs)
scaffold0460 (244-272)||(13511-13539)
[»] scaffold0115 (1 HSPs)
scaffold0115 (244-272)||(33336-33364)
[»] chr7 (5 HSPs)
chr7 (244-272)||(25938-25966)
chr7 (244-272)||(317949-317977)
chr7 (244-272)||(2146866-2146894)
chr7 (244-272)||(25606979-25607007)
chr7 (244-272)||(29824021-29824049)
[»] chr6 (6 HSPs)
chr6 (244-272)||(187824-187852)
chr6 (244-272)||(9241531-9241559)
chr6 (244-272)||(11523469-11523497)
chr6 (244-272)||(12025571-12025599)
chr6 (244-272)||(27923741-27923769)
chr6 (244-272)||(34709909-34709937)
[»] chr4 (8 HSPs)
chr4 (244-272)||(615489-615517)
chr4 (244-272)||(6232476-6232504)
chr4 (244-272)||(7165451-7165479)
chr4 (244-272)||(12250729-12250757)
chr4 (244-272)||(13392743-13392771)
chr4 (244-272)||(13395882-13395910)
chr4 (244-272)||(46096111-46096139)
chr4 (244-272)||(46138612-46138640)


Alignment Details
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 116 - 201
Target Start/End: Original strand, 45428359 - 45428443
Alignment:
Q  116 gttttagggttcaataagtggaaattaatttggggatttcagannnnnnnattcccccaattctcttttaatttcaataataattt 201  Q
    |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  45428359 gttttagggttcaataagtggaaattaatttggggatttcaga-ttttttattcccccaattctcttttaatttcaataataattt 45428443  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 45427995 - 45427918
Alignment:
Q  125 ttcaataagtggaaattaatttggggatttcagannnnnnn-attcccccaattctcttttaatttcaataataattt 201  Q
    ||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||    
T  45427995 ttcaataagtggaaattaatttggggatttcagattttttttattcccccaattctcttttaatttcaataataattt 45427918  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Original strand, 13574051 - 13574079
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  13574051 tattgagggagtaaagtgtatattttaac 13574079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Complemental strand, 25068407 - 25068379
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  25068407 tattgagggagtaaagtgtatattttaac 25068379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Complemental strand, 25813104 - 25813076
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  25813104 tattgagggagtaaagtgtatattttaac 25813076  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Original strand, 41322187 - 41322215
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  41322187 tattgagggagtaaagtgtatattttaac 41322215  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Original strand, 52505966 - 52505994
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  52505966 tattgagggagtaaagtgtatattttaac 52505994  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 201
Target Start/End: Complemental strand, 12172654 - 12172619
Alignment:
Q  166 attcccccaattctcttttaatttcaataataattt 201  Q
    ||||||||||||||||||||||||||||||||||||    
T  12172654 attcccccaattctcttttaatttcaataataattt 12172619  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Complemental strand, 551908 - 551880
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  551908 tattgagggagtaaagtgtatattttaac 551880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Complemental strand, 20893286 - 20893258
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  20893286 tattgagggagtaaagtgtatattttaac 20893258  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Original strand, 35899810 - 35899838
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  35899810 tattgagggagtaaagtgtatattttaac 35899838  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Original strand, 38973136 - 38973164
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  38973136 tattgagggagtaaagtgtatattttaac 38973164  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Original strand, 43657584 - 43657612
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  43657584 tattgagggagtaaagtgtatattttaac 43657612  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 1277675 - 1277708
Alignment:
Q  166 attcccccaattctcttttaatttcaataataat 199  Q
    ||||||||||||||||||||||||||||||||||    
T  1277675 attcccccaattctcttttaatttcaataataat 1277708  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Complemental strand, 41462860 - 41462827
Alignment:
Q  167 ttcccccaattctcttttaatttcaataataatt 200  Q
    ||||||||||||| ||||||||||||||||||||    
T  41462860 ttcccccaattcttttttaatttcaataataatt 41462827  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Complemental strand, 1198514 - 1198486
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  1198514 tattgagggagtaaagtgtatattttaac 1198486  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Original strand, 4055400 - 4055428
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  4055400 tattgagggagtaaagtgtatattttaac 4055428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Complemental strand, 20691197 - 20691169
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  20691197 tattgagggagtaaagtgtatattttaac 20691169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Complemental strand, 24624900 - 24624872
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  24624900 tattgagggagtaaagtgtatattttaac 24624872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Complemental strand, 37657464 - 37657436
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  37657464 tattgagggagtaaagtgtatattttaac 37657436  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 201
Target Start/End: Complemental strand, 16218753 - 16218718
Alignment:
Q  166 attcccccaattctcttttaatttcaataataattt 201  Q
    ||||| ||||||||||||||||||||||||||||||    
T  16218753 attccaccaattctcttttaatttcaataataattt 16218718  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Complemental strand, 8297184 - 8297156
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  8297184 tattgagggagtaaagtgtatattttaac 8297156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Complemental strand, 10215537 - 10215509
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  10215537 tattgagggagtaaagtgtatattttaac 10215509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Complemental strand, 25597858 - 25597830
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  25597858 tattgagggagtaaagtgtatattttaac 25597830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Original strand, 44147519 - 44147547
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  44147519 tattgagggagtaaagtgtatattttaac 44147547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 201
Target Start/End: Original strand, 24693663 - 24693698
Alignment:
Q  166 attcccccaattctcttttaatttcaataataattt 201  Q
    |||||| |||||||||||||||||||||||||||||    
T  24693663 attccctcaattctcttttaatttcaataataattt 24693698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 201
Target Start/End: Complemental strand, 1690967 - 1690939
Alignment:
Q  173 caattctcttttaatttcaataataattt 201  Q
    |||||||||||||||||||||||||||||    
T  1690967 caattctcttttaatttcaataataattt 1690939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Original strand, 10888395 - 10888423
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  10888395 tattgagggagtaaagtgtatattttaac 10888423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Original strand, 11056551 - 11056579
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  11056551 tattgagggagtaaagtgtatattttaac 11056579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Complemental strand, 14601510 - 14601482
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  14601510 tattgagggagtaaagtgtatattttaac 14601482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Original strand, 22130388 - 22130416
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  22130388 tattgagggagtaaagtgtatattttaac 22130416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Original strand, 22524792 - 22524820
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  22524792 tattgagggagtaaagtgtatattttaac 22524820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Complemental strand, 23309021 - 23308993
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  23309021 tattgagggagtaaagtgtatattttaac 23308993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Complemental strand, 24542395 - 24542367
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  24542395 tattgagggagtaaagtgtatattttaac 24542367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Original strand, 37183751 - 37183779
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  37183751 tattgagggagtaaagtgtatattttaac 37183779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Complemental strand, 41865062 - 41865034
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  41865062 tattgagggagtaaagtgtatattttaac 41865034  T

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Target: scaffold0460 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Complemental strand, 13539 - 13511
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  13539 tattgagggagtaaagtgtatattttaac 13511  T

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Target: scaffold0115 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Original strand, 33336 - 33364
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  33336 tattgagggagtaaagtgtatattttaac 33364  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Original strand, 25938 - 25966
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  25938 tattgagggagtaaagtgtatattttaac 25966  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Original strand, 317949 - 317977
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  317949 tattgagggagtaaagtgtatattttaac 317977  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Original strand, 2146866 - 2146894
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  2146866 tattgagggagtaaagtgtatattttaac 2146894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Complemental strand, 25607007 - 25606979
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  25607007 tattgagggagtaaagtgtatattttaac 25606979  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Original strand, 29824021 - 29824049
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  29824021 tattgagggagtaaagtgtatattttaac 29824049  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Complemental strand, 187852 - 187824
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  187852 tattgagggagtaaagtgtatattttaac 187824  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Original strand, 9241531 - 9241559
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  9241531 tattgagggagtaaagtgtatattttaac 9241559  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Original strand, 11523469 - 11523497
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  11523469 tattgagggagtaaagtgtatattttaac 11523497  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Complemental strand, 12025599 - 12025571
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  12025599 tattgagggagtaaagtgtatattttaac 12025571  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Original strand, 27923741 - 27923769
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  27923741 tattgagggagtaaagtgtatattttaac 27923769  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Original strand, 34709909 - 34709937
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  34709909 tattgagggagtaaagtgtatattttaac 34709937  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Complemental strand, 615517 - 615489
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  615517 tattgagggagtaaagtgtatattttaac 615489  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Complemental strand, 6232504 - 6232476
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  6232504 tattgagggagtaaagtgtatattttaac 6232476  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Complemental strand, 7165479 - 7165451
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  7165479 tattgagggagtaaagtgtatattttaac 7165451  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Complemental strand, 12250757 - 12250729
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  12250757 tattgagggagtaaagtgtatattttaac 12250729  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Original strand, 13392743 - 13392771
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  13392743 tattgagggagtaaagtgtatattttaac 13392771  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Original strand, 13395882 - 13395910
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  13395882 tattgagggagtaaagtgtatattttaac 13395910  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Original strand, 46096111 - 46096139
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  46096111 tattgagggagtaaagtgtatattttaac 46096139  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Original strand, 46138612 - 46138640
Alignment:
Q  244 tattgagggagtaaagtgtatattttaac 272  Q
    |||||||||||||||||||||||||||||    
T  46138612 tattgagggagtaaagtgtatattttaac 46138640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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