View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14480_low_3 (Length: 670)

Name: NF14480_low_3
Description: NF14480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14480_low_3
NF14480_low_3
[»] chr2 (8 HSPs)
chr2 (459-670)||(25287605-25287816)
chr2 (1-229)||(1658622-1658849)
chr2 (107-228)||(22710217-22710338)
chr2 (229-297)||(25287372-25287440)
chr2 (393-436)||(25287537-25287580)
chr2 (111-229)||(38432071-38432187)
chr2 (72-117)||(8148784-8148829)
chr2 (72-117)||(8153408-8153453)
[»] chr7 (7 HSPs)
chr7 (1-228)||(37616791-37617018)
chr7 (1-228)||(36828829-36829055)
chr7 (1-228)||(4554634-4554860)
chr7 (1-229)||(43282626-43282864)
chr7 (1-229)||(4968054-4968292)
chr7 (510-668)||(34813720-34813878)
chr7 (64-124)||(18713225-18713286)
[»] scaffold0044 (1 HSPs)
scaffold0044 (1-229)||(82908-83135)
[»] chr8 (2 HSPs)
chr8 (1-228)||(10289536-10289762)
chr8 (1-229)||(43266169-43266396)
[»] chr1 (8 HSPs)
chr1 (1-159)||(8113781-8113939)
chr1 (1-229)||(24765187-24765425)
chr1 (1-228)||(47974943-47975169)
chr1 (73-181)||(125287-125395)
chr1 (134-229)||(23894594-23894689)
chr1 (135-229)||(20010627-20010720)
chr1 (229-297)||(17204247-17204315)
chr1 (64-154)||(325836-325927)
[»] chr5 (3 HSPs)
chr5 (3-234)||(35228096-35228327)
chr5 (1-228)||(33672107-33672334)
chr5 (134-192)||(21286137-21286195)
[»] chr3 (5 HSPs)
chr3 (1-229)||(48663880-48664107)
chr3 (1-228)||(4100582-4100819)
chr3 (72-229)||(2994027-2994173)
chr3 (1-124)||(28160504-28160627)
chr3 (64-186)||(16900498-16900621)
[»] chr4 (1 HSPs)
chr4 (64-154)||(11057097-11057188)
[»] chr6 (1 HSPs)
chr6 (64-154)||(5319534-5319625)


Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 459 - 670
Target Start/End: Original strand, 25287605 - 25287816
Alignment:
Q  459 tgtatgtttaacggttaacgtaacataatagctggaaatagcaaaaactgcaattctttcatatcaagtcatgcatgtcactttctaatgcacataaaag 558  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  25287605 tgtatgtttaacagttaacgtaacataatagctggaaatagcaaaaactgcaattctttcatatcaagtcatgcatgtcactttctaatgcacataaatg 25287704  T
Q  559 attattttagtgcttagtgtatgattatgaaatcattaacgcaaaattgtacatgtacaatcataattgtgcaatcaaagagcatggtagaacctgtggt 658  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  25287705 attattttagtgcttagtgtatgattatgaaatcattaacgcagaattgtacatgtacaattataattgttcaatcaaagagcatggtagaacctgtggt 25287804  T
Q  659 ttagaagcttgt 670  Q
    ||||||||||||    
T  25287805 ttagaagcttgt 25287816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 1658849 - 1658622
Alignment:
Q  1 gaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaattttgtttcgacccgaaaaagcggacgatttgacccgctaccgct 100  Q
    |||||| ||||||||||||||||||| || ||||||||||||| |||||  ||||||| | ||||||||| ||| |||     || |||||||| |||||    
T  1658849 gaaaattacaaaattaacccttctaatgtcacttaagtgaggggtaattctgtaatttcgcttcgacccggaaacgcgccgcgttagacccgctcccgct 1658750  T
Q  101 ccacgtaaagcggccgcaaaacccaattttggaccgcttttccataacgcgcgatgcggtcgcgttctaacgcgctaggctattttcagccgtgatcgca 200  Q
    ||||| ||||||||||| ||||||  ||||   |||||||| | |||||||||||||||||||||||| |||||||||||| ||||||||||    |||     
T  1658749 ccacgaaaagcggccgcgaaacccggttttcagccgcttttgcctaacgcgcgatgcggtcgcgttctgacgcgctaggctgttttcagccg-ctccgcg 1658651  T
Q  201 ccgcgttaggccgctattgacaacagagg 229  Q
    |||||||||||||||||||||||||||||    
T  1658650 ccgcgttaggccgctattgacaacagagg 1658622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 107 - 228
Target Start/End: Complemental strand, 22710338 - 22710217
Alignment:
Q  107 aaagcggccgcaaaacccaattttggaccgcttttccataacgcgcgatgcggtcgcgttctaacgcgctaggctattttcagccgtgatcgcaccgcgt 206  Q
    ||||||||||| ||||||  |||| | ||||| || | ||||||||| |||||||||||||| |||||||||||| |||||||||| |||||  ||||||    
T  22710338 aaagcggccgcgaaacccggttttcgcccgctattgcctaacgcgcgttgcggtcgcgttctgacgcgctaggctgttttcagccgcgatcgtgccgcgt 22710239  T
Q  207 taggccgctattgacaacagag 228  Q
    || |||||||||||||||||||    
T  22710238 taagccgctattgacaacagag 22710217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 229 - 297
Target Start/End: Original strand, 25287372 - 25287440
Alignment:
Q  229 ggtgtaacgtgccccttgtcaaaagcttcagcgattatcttctcagtcatagtcatggttgtcttcacc 297  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||    
T  25287372 ggtgtaacgtgccccttgtcaaaagctttagccattatcttctcagtcataatcatggttgtcttcacc 25287440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 393 - 436
Target Start/End: Original strand, 25287537 - 25287580
Alignment:
Q  393 aataaacaaaacgaagaaacacctaatctcataggtgaccttcc 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  25287537 aataaacaaaacgaagaaacacctaatctcataggtgaccttcc 25287580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 111 - 229
Target Start/End: Complemental strand, 38432187 - 38432071
Alignment:
Q  111 cggccgcaaaacccaattttggaccgcttttccataacgcgcgatgcggtcgcgttctaacgcgctaggctattttcagccgtgatcgcaccgcgttagg 210  Q
    ||||||| ||||||  |||||  ||||||||   ||||||||||  |||||||||||| |||||||||||| ||||||||||    ||| |||||||||     
T  38432187 cggccgcgaaaccccgttttgttccgcttttgtctaacgcgcgactcggtcgcgttctgacgcgctaggctgttttcagccg-ctccgcgccgcgttagc 38432089  T
Q  211 ccgctattgacaacagagg 229  Q
    ||| |||||||||||||||    
T  38432088 ccg-tattgacaacagagg 38432071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 8148829 - 8148784
Alignment:
Q  72 aaaagcggacgatttgacccgctaccgctccacgtaaagcggccgc 117  Q
    ||||| || ||||||||||||||||||||||| |||||||||||||    
T  8148829 aaaagtgggcgatttgacccgctaccgctccatgtaaagcggccgc 8148784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 8153453 - 8153408
Alignment:
Q  72 aaaagcggacgatttgacccgctaccgctccacgtaaagcggccgc 117  Q
    ||||| || ||||||||||||||||||||||| |||||||||||||    
T  8153453 aaaagtgggcgatttgacccgctaccgctccatgtaaagcggccgc 8153408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 180; Significance: 7e-97; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 37617018 - 37616791
Alignment:
Q  1 gaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaattttgtttcgacccgaaaaagcggacgatttgacccgctaccgct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||||||    
T  37617018 gaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaatttcgtttcgacccggaaaagtgggcgatttgacccgctaccgct 37616919  T
Q  101 ccacgtaaagcggccgcaaaacccaattttggaccgcttttccataacgcgcgatgcggtcgcgttctaacgcgctaggctattttcagccgtgatcgca 200  Q
    ||||||||||||||||| ||||||  ||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||| ||||||     
T  37616918 ccacgtaaagcggccgcgaaacccggttttggaccgcttttccctaacacgcgatgcggtcgcgttctaacgcgctaggctgttttcagccgcgatcgcg 37616819  T
Q  201 ccgcgttaggccgctattgacaacagag 228  Q
    ||||||||||||||||||||||||||||    
T  37616818 ccgcgttaggccgctattgacaacagag 37616791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 36828829 - 36829055
Alignment:
Q  1 gaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaattttgtttcgacccgaaaaagcggacgatttgacccgctaccgct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| | |||||||| ||||||||||||||||||||    
T  36828829 gaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaatttcgtt-cgacctggaaaagcgggcgatttgacccgctaccgct 36828927  T
Q  101 ccacgtaaagcggccgcaaaacccaattttggaccgcttttccataacgcgcgatgcggtcgcgttctaacgcgctaggctattttcagccgtgatcgca 200  Q
    ||| ||||||||||||| ||||||  ||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||| ||||||     
T  36828928 ccatgtaaagcggccgcgaaacccggttttggaccgcttttccctaacgcgcgatgcggtcgcgatctaacgcgctaggctgttttcagccgcgatcgcg 36829027  T
Q  201 ccgcgttaggccgctattgacaacagag 228  Q
    ||||||||||||||||||||||||||||    
T  36829028 ccgcgttaggccgctattgacaacagag 36829055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 4554634 - 4554860
Alignment:
Q  1 gaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaattttgtttcgacccgaaaaagcggacgatttgacccgctaccgct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||| ||| ||||||||  |||||||||||||||| ||    
T  4554634 gaaaatgacaaaattaacccttctaacgttacttaagtgagggataattccataatttcgtttcgaaccggaaaagcgggtgatttgacccgctaccact 4554733  T
Q  101 ccacgtaaagcggccgcaaaacccaattttggaccgcttttccataacgcgcgatgcggtcgcgttctaacgcgctaggctattttcagccgtgatcgca 200  Q
    ||| ||||||||||||| ||||||  |||||  |||||||| | ||||||||||  |||||||||||| ||| |||||||| |||||||||| ||||||     
T  4554734 ccatgtaaagcggccgcgaaacccggttttgttccgcttttgcctaacgcgcgactcggtcgcgttctgacg-gctaggctgttttcagccgcgatcgcg 4554832  T
Q  201 ccgcgttaggccgctattgacaacagag 228  Q
    |||| || |  |||||||||||||||||    
T  4554833 ccgcatttgaacgctattgacaacagag 4554860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 43282864 - 43282626
Alignment:
Q  1 gaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaattttgtttcgacccgaaaaagcggacgatttgacccgctaccgct 100  Q
    |||||| ||||||||||||||||||| || ||||||||||||| |||||  ||||||| | ||||||||| ||| |||     || |||||||| |||||    
T  43282864 gaaaattacaaaattaacccttctaatgtcacttaagtgaggggtaattctgtaatttcgcttcgacccggaaacgcgccgcgttagacccgctcccgct 43282765  T
Q  101 ccacgtaaagcggccgcaaaacccaattttggaccgcttttccataacgcgcgatgcggtcgcgttctaacgcgctaggctattttca----------gc 190  Q
    ||||| ||||| ||||| ||||||  ||||   |||||||| | |||||||||||||||||||||||| |||||||||||| ||||||          ||    
T  43282764 ccacgaaaagcagccgcgaaacccggttttcagccgcttttgcctaacgcgcgatgcggtcgcgttctgacgcgctaggctgttttcagccgctccgcgc 43282665  T
Q  191 cgtgatcgcaccgcgttaggccgctattgacaacagagg 229  Q
    || |||||| |||||||||||||||||||||||||||||    
T  43282664 cgcgatcgcgccgcgttaggccgctattgacaacagagg 43282626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 4968292 - 4968054
Alignment:
Q  1 gaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaattttgtttcgacccgaaaaagcggacgatttgacccgctaccgct 100  Q
    |||||| ||||||||||||||||||| || ||||||||||||| |||||  ||||||| | ||||||||| ||| |||     || |||||||| | |||    
T  4968292 gaaaattacaaaattaacccttctaatgtcacttaagtgaggggtaattctgtaatttcgcttcgacccggaaacgcgccgcgttagacccgctccagct 4968193  T
Q  101 ccacgtaaagcggccgcaaaacccaattttggaccgcttttccataacgcgcgatgcggtcgcgttctaacgcgctaggctattttca----------gc 190  Q
    ||||| ||||||||||| ||||||  ||||   |||||||| | |||||||||||||||||||||||| | |||||||||| ||||||          ||    
T  4968192 ccacgaaaagcggccgcgaaacccggttttcagccgcttttgcctaacgcgcgatgcggtcgcgttctgatgcgctaggctgttttcagccgctccgcgc 4968093  T
Q  191 cgtgatcgcaccgcgttaggccgctattgacaacagagg 229  Q
    || |||||| |||||||||||||||||||||||||||||    
T  4968092 cgcgatcgcgccgcgttaggccgctattgacaacagagg 4968054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 510 - 668
Target Start/End: Original strand, 34813720 - 34813878
Alignment:
Q  510 aattctttcatatcaagtcatgcatgtcactttctaatgcacataaaagattattttagtgcttagtgtatgattatgaaatcattaacgcaaaattgta 609  Q
    |||||||||||||  | |||||||||| ||| ||| ||||| |||||||||||||||||| |||||||| || |||| |||||||||||  |||||| ||    
T  34813720 aattctttcatatatactcatgcatgtgactctcttatgcaaataaaagattattttagttcttagtgtttggttataaaatcattaacataaaattcta 34813819  T
Q  610 catgtacaatcataattgtgcaatcaaagagcatggtagaacctgtggtttagaagctt 668  Q
    | ||||| | ||||||| ||||| |||| | ||||||||||||||||||||||||||||    
T  34813820 cttgtacgaccataattttgcaaccaaacaacatggtagaacctgtggtttagaagctt 34813878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 18713225 - 18713286
Alignment:
Q  64 cgacccgaaaaagcggacgatttgacccgctaccgctccacgtaaa-gcggccgcaaaaccc 124  Q
    ||||||| |||||||| |||||||||||||| |||||||| ||||| |||||||| ||||||    
T  18713225 cgacccggaaaagcgggcgatttgacccgctcccgctccaggtaaaggcggccgcgaaaccc 18713286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 149; Significance: 2e-78; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 83135 - 82908
Alignment:
Q  1 gaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaattttgtttcgacccgaaaaagcggacgatttgacccgctaccgct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||| ||||||||||||||||||||    
T  83135 gaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgttatttcgtttcgacccggaaaagcgggcgatttgacccgctaccgct 83036  T
Q  101 ccacgtaaagcggccgcaaaacccaattttggaccgcttttccataacgcgcgatgcggtcgcgttctaacgcgctaggctattttcagccgtgatcgca 200  Q
    |||||||||||| |||| ||||||  ||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||| ||||    ||      
T  83035 ccacgtaaagcgcccgcgaaacccggttttggaccgcttttccctaacgcgcgatgtggtcgcgttctaacgcgctaggctgttttccgccg-ctccgag 82937  T
Q  201 ccgcgttaggccgctattgacaacagagg 229  Q
    ||||||||||||||||||||||| |||||    
T  82936 ccgcgttaggccgctattgacaaaagagg 82908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 124; Significance: 2e-63; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 10289762 - 10289536
Alignment:
Q  1 gaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaattttgtttcgacccgaaaaagcggacgatttgacccgctaccgct 100  Q
    |||||| ||||||||||||||||||| || ||||||||||||| |||||| ||||||||||||||||||| |||||||| |||||||||||||| |||||    
T  10289762 gaaaattacaaaattaacccttctaatgtcacttaagtgaggggtaattttgtaattttgtttcgacccggaaaagcgggcgatttgacccgctcccgct 10289663  T
Q  101 ccacgtaaagcggccgcaaaacccaattttggaccgcttttccataacgcgcgatgcggtcgcgttctaacgcgctaggctattttcagccgtgatcgca 200  Q
    ||| | ||||||||||||||||||  ||| ||||||||||| | ||||||||| ||||||||||||||||||||||||||| |||||| |||    |||     
T  10289662 ccatgaaaagcggccgcaaaacccggtttaggaccgcttttgcctaacgcgcgttgcggtcgcgttctaacgcgctaggctgttttcaaccg-ctccgcg 10289564  T
Q  201 ccgcgttaggccgctattgacaacagag 228  Q
    ||| ||||| ||||||||||||||||||    
T  10289563 ccgtgttagaccgctattgacaacagag 10289536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 43266169 - 43266396
Alignment:
Q  1 gaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaattttgtttcgacccgaaaaagcggacgatttgacccgctaccgct 100  Q
    |||||| ||||||||||||||||||| || ||||||||||||| |||||  ||||||| | ||||||||||||| |||     || ||||| || |||||    
T  43266169 gaaaattacaaaattaacccttctaatgtcacttaagtgaggggtaattctgtaatttcgcttcgacccgaaaacgcgccgcgttagacccactcccgct 43266268  T
Q  101 ccacgtaaagcggccgcaaaacccaattttggaccgcttttccataacgcgcgatgcggtcgcgttctaacgcgctaggctattttcagccgtgatcgca 200  Q
    ||||| ||||||||||| ||||||  ||||   |||||||| | |||||||||||||||||| ||||| |||||||||||| ||||||||||    |||     
T  43266269 ccacgaaaagcggccgcgaaacccggttttcagccgcttttgcctaacgcgcgatgcggtcgtgttctgacgcgctaggctgttttcagccg-ctccgcg 43266367  T
Q  201 ccgcgttaggccgctattgacaacagagg 229  Q
    |||||||||||||||||||||||||||||    
T  43266368 ccgcgttaggccgctattgacaacagagg 43266396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 8e-63; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 8113939 - 8113781
Alignment:
Q  1 gaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaattttgtttcgacccgaaaaagcggacgatttgacccgctaccgct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||| ||||||||||||||||||||    
T  8113939 gaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaatttcgtttcgatccggaaaagcgggcgatttgacccgctaccgct 8113840  T
Q  101 ccacgtaaagcggccgcaaaacccaattttggaccgcttttccataacgcgcgatgcgg 159  Q
    ||| ||||||||||||| ||||||| |||||||||| |||||| |||||||||||||||    
T  8113839 ccatgtaaagcggccgcgaaacccagttttggaccgtttttccctaacgcgcgatgcgg 8113781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 24765425 - 24765187
Alignment:
Q  1 gaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaattttgtttcgacccgaaaaagcggacgatttgacccgctaccgct 100  Q
    |||||| |||||||||||||| |||| || |||||||||||||  ||||||||||||||   |||||||| |||||||| ||||||||||||||||||||    
T  24765425 gaaaattacaaaattaaccctactaatgtcacttaagtgaggggcaatttcgtaatttttggtcgacccggaaaagcgggcgatttgacccgctaccgct 24765326  T
Q  101 ccacgtaaagcggccgcaaaacccaattttggaccgcttttccataacgcgcgatgcggtcgcgttctaacgcgctaggctattttca----------gc 190  Q
    ||| | ||||||||| | ||| ||  ||| || |||||||| | ||||||||| ||||||||||||||||||||||||||| ||||||          ||    
T  24765325 ccaggaaaagcggccacgaaaaccggtttaggtccgcttttgcctaacgcgcgttgcggtcgcgttctaacgcgctaggctgttttcagccgctccgcgc 24765226  T
Q  191 cgtgatcgcaccgcgttaggccgctattgacaacagagg 229  Q
    || |||||| |||||||||||||||||||||||||||||    
T  24765225 cgcgatcgcgccgcgttaggccgctattgacaacagagg 24765187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 47974943 - 47975169
Alignment:
Q  1 gaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaattttgtttcgacccgaaaaagcggacgatttgacccgctaccgct 100  Q
    |||||| ||||||||||||||||||| || ||||||||||||| |||||  ||||||| | ||||||||| ||| |||     || |||||||| |||||    
T  47974943 gaaaattacaaaattaacccttctaatgtcacttaagtgaggggtaattctgtaatttcgcttcgacccggaaacgcgccgcgttagacccgctcccgct 47975042  T
Q  101 ccacgtaaagcggccgcaaaacccaattttggaccgcttttccataacgcgcgatgcggtcgcgttctaacgcgctaggctattttcagccgtgatcgca 200  Q
    ||||| ||||||||||| ||||||  ||||   |||||||| | |||||||||||||||||||||||| |||||||||||| ||||||||||    |||     
T  47975043 ccacgaaaagcggccgcgaaacccggttttcagccgcttttgcctaacgcgcgatgcggtcgcgttctgacgcgctaggctgttttcagccg-ctccgcg 47975141  T
Q  201 ccgcgttaggccgctattgacaacagag 228  Q
    ||||||||||||||||||||||||||||    
T  47975142 ccgcgttaggccgctattgacaacagag 47975169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 73 - 181
Target Start/End: Complemental strand, 125395 - 125287
Alignment:
Q  73 aaagcggacgatttgacccgctaccgctccacgtaaagcggccgcaaaacccaattttggaccgcttttccataacgcgcgatgcggtcgcgttctaacg 172  Q
    ||||||| || |||||||||||||||||||| ||||||||||||| ||||||  |||||  |||||||| | |||||| |||  |||||| ||||| |||    
T  125395 aaagcggccgctttgacccgctaccgctccatgtaaagcggccgcgaaacccggttttgttccgcttttgcctaacgcacgactcggtcgagttctgacg 125296  T
Q  173 cgctaggct 181  Q
    |||||||||    
T  125295 cgctaggct 125287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 134 - 229
Target Start/End: Original strand, 23894594 - 23894689
Alignment:
Q  134 ccgcttttccataacgcgcgatgcggtcgcgttctaacgcgctaggctattttcagccgtgatcgcaccgcgttaggccgctattgacaacagagg 229  Q
    |||||||| | ||||||| ||  | |||||||||| |||||||||||| |||||||||| |||||| || | ||||||||||||||||||||||||    
T  23894594 ccgcttttgcctaacgcgtgactcagtcgcgttctgacgcgctaggctgttttcagccgcgatcgcgccacattaggccgctattgacaacagagg 23894689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 135 - 229
Target Start/End: Original strand, 20010627 - 20010720
Alignment:
Q  135 cgcttttccataacgcgcgatgcggtcgcgttctaacgcgctaggctattttcagccgtgatcgcaccgcgttaggccgctattgacaacagagg 229  Q
    ||||||| | ||||||||||  ||||||||||||||||||||||||| ||||||||||    ||| ||||||||| |||| ||||||||||||||    
T  20010627 cgcttttgcctaacgcgcgactcggtcgcgttctaacgcgctaggctgttttcagccg-ctccgcgccgcgttagcccgcaattgacaacagagg 20010720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 229 - 297
Target Start/End: Complemental strand, 17204315 - 17204247
Alignment:
Q  229 ggtgtaacgtgccccttgtcaaaagcttcagcgattatcttctcagtcatagtcatggttgtcttcacc 297  Q
    |||||||| |||||||| ||| ||||||  || ||||||||||||||||||||||| | ||||||||||    
T  17204315 ggtgtaacatgccccttctcagaagctttcgccattatcttctcagtcatagtcatagctgtcttcacc 17204247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 64 - 154
Target Start/End: Original strand, 325836 - 325927
Alignment:
Q  64 cgacccgaaaaagcggacgatttgacccgctaccgctccacgtaaa-gcggccgcaaaacccaattttggaccgcttttccataacgcgcga 154  Q
    ||||||| |||||| | |||||||||||||| |||||||| ||||| |||||||| ||||||  | |||  |||||||||| ||||||||||    
T  325836 cgacccggaaaagcaggcgatttgacccgctcccgctccaggtaaaggcggccgcgaaacccgctattgacccgcttttccctaacgcgcga 325927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 116; Significance: 1e-58; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 3 - 234
Target Start/End: Original strand, 35228096 - 35228327
Alignment:
Q  3 aaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaattttgtttcgacccgaaaaagcggacgatttgacccgctaccgctcc 102  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||| |||||||| ||| |||||| |||||||||||    
T  35228096 aaatgacaaaattaacccttctaacgttacataagtgagggataattccgtaatttcgtttcgacccggaaaagcgggcgacttgaccagctaccgctcc 35228195  T
Q  103 acgtaaagcggccgcaaaacccaattttggaccgcttttccataacgcgcgatgcggtcgcgttctaacgcgctaggctattttcagccgtgatcgcacc 202  Q
    | |||||||||| || ||||||  |||||  |||||||| | ||| ||||||  || ||||||||| |||||||||||| |||||||||| |||||| ||    
T  35228196 atgtaaagcggctgcgaaacccggttttgttccgcttttgcttaatgcgcgactcgatcgcgttctgacgcgctaggctgttttcagccgcgatcgcgcc 35228295  T
Q  203 gcgttaggccgctattgacaacagagggtgta 234  Q
    ||||| |  ||||||||||||| |||| ||||    
T  35228296 gcgtttgatcgctattgacaacggaggttgta 35228327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 33672334 - 33672107
Alignment:
Q  1 gaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaattttgtttcgacccgaaaaagcggacgatttgacccgctaccgct 100  Q
    |||||| ||||||||||||||||||| || ||||| ||||||| |||||  ||||||| | ||| ||||| ||| |||     || ||||| || |||||    
T  33672334 gaaaattacaaaattaacccttctaatgtcactta-gtgaggggtaattatgtaatttcgcttcaacccggaaacgcgccgcgttagacccactcccgct 33672236  T
Q  101 cca-cgtaaagcggccgcaaaacccaattttggaccgcttttccataacgcgcgatgcggtcgcgttctaacgcgctaggctattttcagccgtgatcgc 199  Q
    | | |  ||||||||||| ||||||  ||||   |||||||| | |||||||||||||||||||||||| |||||||||||| |||||||| | ||||||    
T  33672235 ctaacaaaaagcggccgcgaaacccggttttcagccgcttttgcctaacgcgcgatgcggtcgcgttctgacgcgctaggctgttttcagcagcgatcgc 33672136  T
Q  200 accgcgttaggccgctattgacaacagag 228  Q
     |||||||||||||||| |||||||||||    
T  33672135 gccgcgttaggccgctactgacaacagag 33672107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 21286137 - 21286195
Alignment:
Q  134 ccgcttttccataacgcgcgatgcggtcgcgttctaacgcgctaggctattttcagccg 192  Q
    |||||||| | ||||||||||  |||||||||| | |||||||||||| ||||||||||    
T  21286137 ccgcttttgcctaacgcgcgactcggtcgcgttttgacgcgctaggctgttttcagccg 21286195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 2e-47; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 48663880 - 48664107
Alignment:
Q  1 gaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaattttgtttcgacccgaaaaagcggacgatttgacccgctaccgct 100  Q
    |||||| ||||||||||||||||||| || ||||||||||||| |||||  ||||||| | ||||||||| ||| |||     || |||||||| |||||    
T  48663880 gaaaattacaaaattaacccttctaatgtcacttaagtgaggggtaattctgtaatttcgcttcgacccggaaacgcgccgcgttagacccgctcccgct 48663979  T
Q  101 ccacgtaaagcggccgcaaaacccaattttggaccgcttttccataacgcgcgatgcggtcgcgttctaacgcgctaggctattttcagccgtgatcgca 200  Q
    ||||| ||||||||||| ||||||  ||||   |||||||| | |||||||||||||||||||||||| |||||||||||| ||||||||||   ||||     
T  48663980 ccacgaaaagcggccgcgaaacccggttttcagccgcttttgcctaacgcgcgatgcggtcgcgttctgacgcgctaggctgttttcagccg-cttcgcg 48664078  T
Q  201 ccgcgttaggccgctattgacaacagagg 229  Q
    |||||||||||||||||||||||||||||    
T  48664079 ccgcgttaggccgctattgacaacagagg 48664107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 4100819 - 4100582
Alignment:
Q  1 gaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaattttgtttcgacccgaaaaagcggacgatttgacccgctaccgct 100  Q
    |||||| |||||||||| |||||||| || ||||||||||||| |||||  ||||||| | ||||||||| ||| |||     || |||||||| |||||    
T  4100819 gaaaattacaaaattaaaccttctaatgtcacttaagtgaggggtaattctgtaatttcgcttcgacccggaaacgcgccgcgttagacccgctcccgct 4100720  T
Q  101 ccacgtaaagcggccgcaaaacccaattttggaccgcttttccataacgcgcgatgcggtcgcgttctaacgcgctaggctattttca----------gc 190  Q
    ||||| ||||||||||| ||||||  ||||   | |||||| | |||||||||||||||||||||||| |||||||||||| ||||||          ||    
T  4100719 ccacgaaaagcggccgcgaaacccggttttcagctgcttttgcctaacgcgcgatgcggtcgcgttctgacgcgctaggctgttttcagccgctccgcgc 4100620  T
Q  191 cgtgatcgcaccgcgttaggccgctattgacaacagag 228  Q
    || |||||| ||||||||||||||||||||||||||||    
T  4100619 cgcgatcgcgccgcgttaggccgctattgacaacagag 4100582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 229
Target Start/End: Original strand, 2994027 - 2994173
Alignment:
Q  72 aaaagcggacgatttgacccgctaccgctccacgtaaagcggccgcaaaacccaattttggaccgcttttccataacgcgcgatgcggtcgcgttctaac 171  Q
    |||||| | |||||||||||||||||  |||| ||||||||||||| |||||||           ||||||| |||| || ||  |||||||| ||| ||    
T  2994027 aaaagctggcgatttgacccgctaccaatccatgtaaagcggccgcgaaaccca-----------cttttccctaacacgtgactcggtcgcgctctgac 2994115  T
Q  172 gcgctaggctattttcagccgtgatcgcaccgcgttaggccgctattgacaacagagg 229  Q
    |||||||||| ||||| |||| ||| || ||||||| |||||||||||||||||||||    
T  2994116 gcgctaggctgttttcggccgcgattgcgccgcgtttggccgctattgacaacagagg 2994173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 28160627 - 28160504
Alignment:
Q  1 gaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaattttgtttcgacccgaaaaagcggacgatttgacccgctaccgct 100  Q
    |||||| |||||||||||| |||||| || ||||||||||||| |||||  ||||||| | ||||||||| ||| | |      | |||||||| |||||    
T  28160627 gaaaattacaaaattaacctttctaatgtcacttaagtgaggggtaattctgtaatttcgcttcgacccggaaacgtgccgcgctagacccgctcccgct 28160528  T
Q  101 ccacgtaaagcggccgcaaaaccc 124  Q
    ||||| ||||||||||||||||||    
T  28160527 ccacgaaaagcggccgcaaaaccc 28160504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 64 - 186
Target Start/End: Original strand, 16900498 - 16900621
Alignment:
Q  64 cgacccgaaaaagcggacgatttgacccgctaccgctccacgtaaa-gcggccgcaaaacccaattttggaccgcttttccataacgcgcgatgcggtcg 162  Q
    ||||||| |||||||| |||||||||||||| |||||||| ||||| | |||||||||||||  | |||  || ||||||| |||| |||||  |||| |    
T  16900498 cgacccggaaaagcgggcgatttgacccgctcccgctccaagtaaaggtggccgcaaaacccgctattgacccacttttccctaacacgcgaatcggtag 16900597  T
Q  163 cgttctaacgcgctaggctatttt 186  Q
    || ||| ||||| |||||| ||||    
T  16900598 cgctctgacgcggtaggctgtttt 16900621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 64 - 154
Target Start/End: Original strand, 11057097 - 11057188
Alignment:
Q  64 cgacccgaaaaagcggacgatttgacccgctaccgctccacgtaaa-gcggccgcaaaacccaattttggaccgcttttccataacgcgcga 154  Q
    ||||||| |||||||| |||||||||||||| |||||||| |||||  ||||||| ||||||  | |||  |||||||||| ||||||||||    
T  11057097 cgacccggaaaagcgggcgatttgacccgctcccgctccaggtaaacccggccgcgaaacccgctattgacccgcttttccctaacgcgcga 11057188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 154
Target Start/End: Complemental strand, 5319625 - 5319534
Alignment:
Q  64 cgacccgaaaaagcggacgatttgacccgctaccgctccacgtaaa-gcggccgcaaaacccaattttggaccgcttttccataacgcgcga 154  Q
    ||||||| |||||| | |||||||||||||| |||||||| ||||| |||||||| ||||||  | | |  |||||||||| ||||||||||    
T  5319625 cgacccggaaaagctggcgatttgacccgctcccgctccaggtaaaggcggccgcgaaacccgctatggacccgcttttccctaacgcgcga 5319534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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