View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14480_low_37 (Length: 208)
Name: NF14480_low_37
Description: NF14480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14480_low_37 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 154; Significance: 7e-82; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 26597956 - 26598113
Alignment:
| Q |
1 |
actcctgagaccacaggttatatgggtggagatgcatccaccggaagatggccaagacaagaaactcttactcttcttgaaatcagatctcgtcttgacc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26597956 |
actcctgagaccacaggttatatgggtggagatgcatccactggaagatggccaagacaagaaactcttactcttcttgaaatcagatctcgtcttgacc |
26598055 |
T |
|
| Q |
101 |
ctaaatttaaagaagctaatcaaaaaggtcctttatgggatgaagtctctaggtacaa |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26598056 |
ctaaatttaaagaagctaatcaaaaaggtcctttatgggatgaagtctctaggtacaa |
26598113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 41606509 - 41606457
Alignment:
| Q |
46 |
agatggccaagacaagaaactcttactcttcttgaaatcagatctcgtcttga |
98 |
Q |
| |
|
|||||||| |||||||| |||||| ||||||| |||||||||||||||||||| |
|
|
| T |
41606509 |
agatggcccagacaagagactctttctcttctagaaatcagatctcgtcttga |
41606457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 198
Target Start/End: Original strand, 26598138 - 26598168
Alignment:
| Q |
168 |
ctttcctaattatttatgtaattatttcttc |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
26598138 |
ctttcctaattatttatgtaattatttcttc |
26598168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University