View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14480_low_38 (Length: 201)
Name: NF14480_low_38
Description: NF14480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14480_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 12 - 190
Target Start/End: Original strand, 5277928 - 5278106
Alignment:
| Q |
12 |
ataatactaactccaaggtgtgattcttatcaatttattgcaattcttccttcatagcttttgttcacttttcattctttaattcaagtgtaacataaag |
111 |
Q |
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| T |
5277928 |
ataatactaactcccaggtgtgattcttatcaatttattgcaattcttccttcatagcttttgttcacttttcattctttaattcaagtgtagcataaag |
5278027 |
T |
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| Q |
112 |
actacataacaatgtcaatcaagagaaacacttctctagaaagaaccatgaataattctaattaacattataattgatg |
190 |
Q |
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| T |
5278028 |
actacataacaatgtcaatcaagagaaacacttcgctagaaagaaccatgaataattctaattaacattataatggatg |
5278106 |
T |
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Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 12316933 - 12316855
Alignment:
| Q |
16 |
tactaactccaaggtgtgattcttatcaatttattgcaattcttccttcatagcttttgttcacttttcattctttaat |
94 |
Q |
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|||||||||| || |||||||||| |||||| ||||||| | ||| |||||||||| |||||||||||||||||||||| |
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| T |
12316933 |
tactaactcctagatgtgattcttctcaattaattgcaactattctttcatagcttctgttcacttttcattctttaat |
12316855 |
T |
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