View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14480_low_7 (Length: 626)

Name: NF14480_low_7
Description: NF14480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14480_low_7
NF14480_low_7
[»] scaffold0076 (1 HSPs)
scaffold0076 (19-342)||(6669-6966)
[»] chr5 (5 HSPs)
chr5 (114-342)||(18594807-18595036)
chr5 (142-326)||(39292120-39292304)
chr5 (108-204)||(13291940-13292037)
chr5 (143-237)||(26703018-26703113)
chr5 (143-237)||(26972751-26972846)
[»] chr4 (10 HSPs)
chr4 (64-268)||(895387-895590)
chr4 (124-237)||(6667720-6667834)
chr4 (116-237)||(13010534-13010655)
chr4 (120-236)||(31767450-31767566)
chr4 (121-237)||(44643452-44643568)
chr4 (124-237)||(6671392-6671500)
chr4 (124-236)||(13250527-13250640)
chr4 (192-237)||(20058104-20058149)
chr4 (124-236)||(43287851-43287964)
chr4 (104-266)||(4747173-4747332)
[»] chr6 (16 HSPs)
chr6 (19-133)||(4845902-4846016)
chr6 (114-238)||(19697845-19697970)
chr6 (90-268)||(3835629-3835808)
chr6 (89-268)||(24044903-24045072)
chr6 (86-218)||(14579582-14579716)
chr6 (157-237)||(6591850-6591930)
chr6 (97-163)||(19973657-19973723)
chr6 (92-162)||(19976070-19976140)
chr6 (458-507)||(26047414-26047463)
chr6 (458-507)||(26049439-26049488)
chr6 (458-507)||(26065723-26065772)
chr6 (458-507)||(26070608-26070657)
chr6 (458-507)||(26085692-26085741)
chr6 (124-221)||(2936165-2936262)
chr6 (458-507)||(25524964-25525013)
chr6 (178-231)||(15518074-15518127)
[»] scaffold0028 (2 HSPs)
scaffold0028 (121-243)||(127700-127822)
scaffold0028 (121-236)||(110121-110236)
[»] chr8 (10 HSPs)
chr8 (114-237)||(1788900-1789024)
chr8 (202-342)||(17088678-17088806)
chr8 (141-267)||(17028375-17028501)
chr8 (141-267)||(17558811-17558937)
chr8 (141-237)||(39655700-39655796)
chr8 (19-121)||(41739941-41740043)
chr8 (141-237)||(21185322-21185418)
chr8 (114-237)||(38678679-38678800)
chr8 (114-191)||(38676300-38676378)
chr8 (200-237)||(38676893-38676930)
[»] chr3 (8 HSPs)
chr3 (106-322)||(2353181-2353399)
chr3 (93-301)||(26445029-26445239)
chr3 (87-221)||(9372229-9372365)
chr3 (120-266)||(19930008-19930153)
chr3 (101-217)||(14658109-14658225)
chr3 (62-159)||(16366445-16366537)
chr3 (90-176)||(14654840-14654929)
chr3 (164-266)||(42253534-42253635)
[»] chr1 (13 HSPs)
chr1 (133-268)||(9111511-9111646)
chr1 (114-237)||(12141653-12141777)
chr1 (141-267)||(24981133-24981259)
chr1 (120-236)||(43254114-43254230)
chr1 (114-213)||(1953680-1953780)
chr1 (19-92)||(9111649-9111721)
chr1 (114-221)||(38825494-38825602)
chr1 (97-237)||(4242570-4242708)
chr1 (141-237)||(47580415-47580513)
chr1 (114-236)||(38828689-38828812)
chr1 (145-268)||(49387576-49387699)
chr1 (86-152)||(21501345-21501411)
chr1 (114-237)||(51465487-51465601)
[»] chr2 (11 HSPs)
chr2 (114-237)||(2590493-2590617)
chr2 (121-243)||(21189401-21189524)
chr2 (124-236)||(18739113-18739226)
chr2 (97-184)||(27107279-27107367)
chr2 (124-220)||(1043148-1043244)
chr2 (114-267)||(14433570-14433725)
chr2 (114-237)||(35969278-35969398)
chr2 (99-155)||(8424424-8424480)
chr2 (145-204)||(27083123-27083183)
chr2 (248-306)||(8388379-8388439)
chr2 (81-152)||(27083189-27083263)
[»] chr7 (11 HSPs)
chr7 (114-237)||(11673994-11674117)
chr7 (90-268)||(13815707-13815885)
chr7 (121-237)||(31210076-31210193)
chr7 (121-237)||(15569566-15569682)
chr7 (121-237)||(31206627-31206744)
chr7 (114-237)||(39426452-39426576)
chr7 (105-266)||(2609574-2609735)
chr7 (165-267)||(22301122-22301224)
chr7 (114-237)||(3850540-3850665)
chr7 (116-235)||(32352432-32352551)
chr7 (96-204)||(15169910-15170019)
[»] scaffold0014 (1 HSPs)
scaffold0014 (141-237)||(82642-82738)
[»] scaffold0002 (1 HSPs)
scaffold0002 (92-204)||(448692-448802)
[»] scaffold0216 (1 HSPs)
scaffold0216 (98-197)||(12090-12190)
[»] scaffold0293 (1 HSPs)
scaffold0293 (141-221)||(4942-5022)


Alignment Details
Target: scaffold0076 (Bit Score: 156; Significance: 1e-82; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 19 - 342
Target Start/End: Complemental strand, 6966 - 6669
Alignment:
Q  19 acttcttgatcagaaaaataccacttttccaccaacacgaaagctctttctttctttccaatttttcttcctgggttacatctcctgtgtttatcaaatt 118  Q
    |||||||||||||||||||||||||||||||||||||  ||| ||||||             |||||||| |||||||||||||||||||||||||||||    
T  6966 acttcttgatcagaaaaataccacttttccaccaacataaaaactcttt-------------ttttcttcgtgggttacatctcctgtgtttatcaaatt 6880  T
Q  119 taagttgttctgtcacctctgatatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacag 218  Q
     |||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||  ||||||||| | | |||||| |||||||||||||| |||||    
T  6879 caagttgttctgtcatctctgatatgattcatatcagggaaaaactgttgtatcatggaaggatatgcacttatgaggcggataaaatcctcaatgacag 6780  T
Q  219 tgagtatgtcacgcctcagtttagagaatggtttattgttttgcaggttacatgagttgttgatagaagatgttgatagagttgtatcggtgtctagtta 318  Q
    ||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||             ||||||||||||||||  ||||||    
T  6779 tgactatgtcacgcctcagtttagataatggtttattgttttgcaggttacataagttgttga-------------tagagttgtatcggtggttagtta 6693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 146; Significance: 1e-76; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 114 - 342
Target Start/End: Original strand, 18594807 - 18595036
Alignment:
Q  114 aaatttaagttgttctgtcacct-ctgatatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaa 212  Q
    |||||| |||||||||||||||| | | ||||||||||| | ||||||||||||||||||||| ||| |||||||| | |||||| ||||||||| ||||    
T  18594807 aaatttgagttgttctgtcaccttcagttatgattcataacggggaagaactgttgtatcctgtgagaatatgcgcttatgaggcggataaaatcttcaa 18594906  T
Q  213 ggacagtgagtatgtcacgcctcagtttagagaatggtttattgttttgcaggttacatgagttgttgatagaagatgttgatagagttgtatcggtgtc 312  Q
    |||||||||  |||||||||||||| ||| | ||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18594907 ggacagtgacaatgtcacgcctcaggttacataatagtattttgttttgcaggttacatgagttgttgatagaagatgttgatagagttgtatcggtgtc 18595006  T
Q  313 tagttatacaaaatttcaatgacagctaag 342  Q
    ||||||||||||||||||||||||||||||    
T  18595007 tagttatacaaaatttcaatgacagctaag 18595036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 142 - 326
Target Start/End: Original strand, 39292120 - 39292304
Alignment:
Q  142 atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcagttta 241  Q
    |||||||||| | | ||||||||||||||| |||  ||||||||||| | |||||| ||||||||||| ||||||||||| ||| |||| |||||| |||    
T  39292120 atgattcataacggagaagaactgttgtattctggaaggatatgcgcttatgaggcggataaaatccttaaggacagtgactatatcacacctcaggtta 39292219  T
Q  242 gagaatggtttattgttttgcaggttacatgagttgttgatagaagatgttgatagagttgtatcggtgtctagttatacaaaat 326  Q
    || ||||||||||||||||||||||||||| ||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  39292220 gataatggtttattgttttgcaggttacataagtcgttgatagaagatattgatagggttgtatcggtgtctagttatacaaaat 39292304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 108 - 204
Target Start/End: Original strand, 13291940 - 13292037
Alignment:
Q  108 tttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaa-ctgttgtatcctgagaggatatgcgcctttgaggcagataaa 204  Q
    |||||||||||  ||||||||| ||||||||||||||||||||||||| ||| || ||||||||||||| |||||||||||| | |||||| ||||||    
T  13291940 tttatcaaattcgagttgttctatcacctctgatatgattcatatcagagaataacctgttgtatcctgggaggatatgcgcttatgaggcggataaa 13292037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 237
Target Start/End: Complemental strand, 26703113 - 26703018
Alignment:
Q  143 tgattcatatcagggaagaact-gttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcag 237  Q
    ||||||||| ||| |||||||| |||||||| || |||||||||||  | |||||| ||||||||||||||||||||||| || ||||||| ||||    
T  26703113 tgattcataccagagaagaacttgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactaagtcacgcatcag 26703018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 237
Target Start/End: Complemental strand, 26972846 - 26972751
Alignment:
Q  143 tgattcatatcagggaagaact-gttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcag 237  Q
    ||||||||| ||| |||||||| |||||||| || |||||||||||  | |||||| ||||||||||||||||||||||| || ||||||| ||||    
T  26972846 tgattcataccagagaagaacttgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactaagtcacgcatcag 26972751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 7e-57; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 64 - 268
Target Start/End: Original strand, 895387 - 895590
Alignment:
Q  64 ctttctttctttccaatttttcttcctgggttacatctcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaac 163  Q
    ||||||||||| ||||||||||||||| | |||| |||||||||||||| ||||| || ||||||| |||||||||||||||||||||| ||||||||||    
T  895387 ctttctttcttcccaatttttcttcctag-ttacttctcctgtgtttattaaattcaacttgttctatcacctctgatatgattcatattagggaagaac 895485  T
Q  164 tgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcagtttagagaatggtttattgttttgca 263  Q
    | |||||||||| |||||||||||| | |||||| ||||||||||||||||||||||| ||||||||| ||||| ||||| ||  ||||| | |||||||    
T  895486 ttttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgactcaggttagataacagtttactattttgca 895585  T
Q  264 ggtta 268  Q
    |||||    
T  895586 ggtta 895590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 124 - 237
Target Start/End: Complemental strand, 6667834 - 6667720
Alignment:
Q  124 tgttctgtcacctctgat-atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgag 222  Q
    |||||||||||||| | | |||||||||| | ||||||||||||||||||||| |||||||||||| | |||||| ||||||||||||||| |||||||     
T  6667834 tgttctgtcacctccggttatgattcataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaagaacagtgac 6667735  T
Q  223 tatgtcacgcctcag 237  Q
    |||||||||||||||    
T  6667734 tatgtcacgcctcag 6667720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 116 - 237
Target Start/End: Complemental strand, 13010655 - 13010534
Alignment:
Q  116 atttaagttgttctgtcacctctgatatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaagga 215  Q
    |||| |||||||||||||| || | |||||||| || | | ||||||||||| ||||||  |||||||||||| | |||||| |||||||||||||||||    
T  13010655 atttgagttgttctgtcacatccgttatgattcgtaacggagaagaactgttatatcctaggaggatatgcgcttatgaggcggataaaatcctcaagga 13010556  T
Q  216 cagtgagtatgtcacgcctcag 237  Q
    |||||| |||||||||||||||    
T  13010555 cagtgactatgtcacgcctcag 13010534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 120 - 236
Target Start/End: Complemental strand, 31767566 - 31767450
Alignment:
Q  120 aagttgttctgtcacctctgatatgattcatatcagggaagaac-tgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacag 218  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||  ||||||||| || | |||||| ||| ||||||| ||||| ||    
T  31767566 aagttgttctgtcacctctgatgtgattcatatcagggaagaacatgttgtatcctaggaggatatgtgcttatgaggcggat-aaatccttaaggatag 31767468  T
Q  219 tgagtatgtcacgcctca 236  Q
    ||| | ||||||||||||    
T  31767467 tgattttgtcacgcctca 31767450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 121 - 237
Target Start/End: Original strand, 44643452 - 44643568
Alignment:
Q  121 agttgttctgtcacctctgat-atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagt 219  Q
    ||||||||||||| ||||| | |||||||||||| ||||||||||||||||||||  |||||||||||| | |||||| |||| ||| || |||||||||    
T  44643452 agttgttctgtcatctctggttatgattcatatcggggaagaactgttgtatcctaggaggatatgcgcttatgaggcggatagaat-ctgaaggacagt 44643550  T
Q  220 gagtatgtcacgcctcag 237  Q
    || |||||||||||||||    
T  44643551 gactatgtcacgcctcag 44643568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 124 - 237
Target Start/End: Complemental strand, 6671500 - 6671392
Alignment:
Q  124 tgttctgtcacctctgat-atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgag 222  Q
    |||||||||||||| | | |||||||||| | ||||||||||||||||||||| ||||||||||      ||||| |||||||||||||||||| ||||     
T  6671500 tgttctgtcacctccggttatgattcataacggggaagaactgttgtatcctgggaggatatgc------gaggcggataaaatcctcaaggacggtgac 6671407  T
Q  223 tatgtcacgcctcag 237  Q
    |||||||||||||||    
T  6671406 tatgtcacgcctcag 6671392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 124 - 236
Target Start/End: Complemental strand, 13250640 - 13250527
Alignment:
Q  124 tgttctgtcacctctgatatgattcatatcagggaagaac-tgttgtatcctgag-aggatatgcgcctttgaggcagataaaatcctcaaggacagtga 221  Q
    |||||||||||| ||||| ||||||||||||||||||||| | ||||||||| || ||||||||||| | |||||  ||| ||||| | ||||| |||||    
T  13250640 tgttctgtcaccactgatgtgattcatatcagggaagaacatattgtatcctaagaaggatatgcgcttatgaggtggat-aaatctttaaggagagtga 13250542  T
Q  222 gtatgtcacgcctca 236  Q
     | ||||||||||||    
T  13250541 ctttgtcacgcctca 13250527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 20058149 - 20058104
Alignment:
Q  192 tgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcag 237  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||    
T  20058149 tgaggcggataaaatcctcaaggacagtgactatgtcacgcctcag 20058104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 124 - 236
Target Start/End: Original strand, 43287851 - 43287964
Alignment:
Q  124 tgttctgtcacctctgatatgattcatatcagggaagaa-ctgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgag 222  Q
    |||||||||||||||||| ||||||||||| | ||||||  ||||||||||||  | ||||||||| | ||||||  |||||  | | |||||||||||     
T  43287851 tgttctgtcacctctgatgtgattcatatctgagaagaatatgttgtatcctggaaagatatgcgcttatgaggcgaataaatcctttaaggacagtgac 43287950  T
Q  223 tatgtcacgcctca 236  Q
    | ||||||||||||    
T  43287951 tttgtcacgcctca 43287964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 104 - 266
Target Start/End: Original strand, 4747173 - 4747332
Alignment:
Q  104 tgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaa-ctgttgtatcctgagaggatatgcgcctttgaggcagata 202  Q
    ||||||||| | ||| |||||||||||||||  |||||||||||||||  || |||||| |||||||||| || |||||||| ||| | |||||   ||     
T  4747173 tgtgtttatgagattcaagttgttctgtcac--ctgatatgattcatacaagcgaagaacctgttgtatcttgggaggatatacgcttatgaggtccat- 4747269  T
Q  203 aaatcctcaaggacagtgagtatgtcacgcctcagtttagagaatggtttattgttttgcaggt 266  Q
     |||||| || |||||||| |  |||||||||||| |||   ||||||||| ||||||||||||    
T  4747270 gaatccttaa-gacagtgacttcgtcacgcctcagattatttaatggtttactgttttgcaggt 4747332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 1e-48; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 4846016 - 4845902
Alignment:
Q  19 acttcttgatcagaaaaataccacttttccaccaacacgaaagctctttctttctttccaatttttcttcctgggttacatctcctgtgtttatcaaatt 118  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  4846016 acttcttgatcagaaaaataccacttttccaccaacacaaaagctctttctttcttcccaatttttcttcctgggttacatctcccgtgtttatcaaatt 4845917  T
Q  119 taagttgttctgtca 133  Q
     ||||||||||||||    
T  4845916 caagttgttctgtca 4845902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 114 - 238
Target Start/End: Complemental strand, 19697970 - 19697845
Alignment:
Q  114 aaatttaagttgttctgtcacctctgat-atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaa 212  Q
    |||||| ||||||||||||||||| ||| |||||||||| | ||||||||||||||||||||| |||||||||||| | |||||| ||||||||||||||    
T  19697970 aaatttgagttgttctgtcacctccgattatgattcataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaa 19697871  T
Q  213 ggacagtgagtatgtcacgcctcagt 238  Q
    ||||| ||| ||||||||||||||||    
T  19697870 ggacaatgactatgtcacgcctcagt 19697845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 90 - 268
Target Start/End: Complemental strand, 3835808 - 3835629
Alignment:
Q  90 tgggttacatctcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaa-ctgttgtatcctgagaggatatgcgc 188  Q
    |||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||  |||||||||||||||||||||||||    
T  3835808 tgggttgcatctcttgtgtttatcaaattcaagttgttctgtcacctctgatatgatttatatcagagaagaatttgttgtatcctgagaggatatgcgc 3835709  T
Q  189 ctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctca-gtttagagaatggtttattgttttgcaggtta 268  Q
     | |||||  ||  ||||||| |||||| ||||   | |||| ||||| |||||   ||||||||| ||||||||||||||    
T  3835708 ttatgagg-tgaataaatccttaaggacggtgatcttatcacacctcatgtttatgcaatggtttactgttttgcaggtta 3835629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 89 - 268
Target Start/End: Complemental strand, 24045072 - 24044903
Alignment:
Q  89 ctgggttacatctcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaac-tgttgtatcctgagaggatatgcg 187  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||| |          |||||||||| |||||||||||| |||||||||||    
T  24045072 ctgggttgcatctcctgtgtttatcatatttaagttgttctgtcacctctgatgt----------agggaagaacatgttgtatcctgggaggatatgcg 24044983  T
Q  188 cctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcagtttagagaatggtttattgttttgcaggtta 268  Q
    | | |||||| ||  ||||||| ||||||||||| | ||||||||||||  ||| | ||||| ||| ||||| ||||||||    
T  24044982 cttatgaggc-gaataaatccttaaggacagtgactttgtcacgcctcatgttatataatggattactgtttggcaggtta 24044903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 86 - 218
Target Start/End: Original strand, 14579582 - 14579716
Alignment:
Q  86 ttcctgggttacatc--tcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaa-ctgttgtatcctgagaggat 182  Q
    |||||||||| ||||  |||| || |||||||||| ||||||||||||||||||| | ||||||||| |||| |||||| ||||||||||||||||||||    
T  14579582 ttcctgggtttcatcattcctctgattatcaaattcaagttgttctgtcacctcttacatgattcatgtcagagaagaacctgttgtatcctgagaggat 14579681  T
Q  183 atgcgcctttgaggcagataaaatcctcaaggacag 218  Q
    || ||| | |||||| ||| ||||||| ||||||||    
T  14579682 attcgcttatgaggcggat-aaatccttaaggacag 14579716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 157 - 237
Target Start/End: Complemental strand, 6591930 - 6591850
Alignment:
Q  157 gaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcag 237  Q
    |||||||||||| |||||| |||||||||||| | |||||| ||||||||||||||||||||||| || ||||||||||||    
T  6591930 gaagaactgttgcatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactacgtcacgcctcag 6591850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 97 - 163
Target Start/End: Original strand, 19973657 - 19973723
Alignment:
Q  97 catctcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaac 163  Q
    ||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||| |||||||    
T  19973657 catctcctgtgtttatcaaattcgagttgttctgtcacctctgatttgattcatatcagagaagaac 19973723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 92 - 162
Target Start/End: Original strand, 19976070 - 19976140
Alignment:
Q  92 ggttacatctcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaa 162  Q
    |||| ||||||||||| ||||||||||  |||||||||||||||| | |||||||||||||||| ||||||    
T  19976070 ggtttcatctcctgtggttatcaaattcgagttgttctgtcacctttaatatgattcatatcagagaagaa 19976140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 458 - 507
Target Start/End: Original strand, 26047414 - 26047463
Alignment:
Q  458 attggaaccaataaatgtcttgcttaatgtcattgatagcagtgtgtttt 507  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  26047414 attggaaccaataaatgtcatgcttaatatcattgatagcagtgtgtttt 26047463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 458 - 507
Target Start/End: Original strand, 26049439 - 26049488
Alignment:
Q  458 attggaaccaataaatgtcttgcttaatgtcattgatagcagtgtgtttt 507  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  26049439 attggaaccaataaatgtcatgcttaatatcattgatagcagtgtgtttt 26049488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 458 - 507
Target Start/End: Original strand, 26065723 - 26065772
Alignment:
Q  458 attggaaccaataaatgtcttgcttaatgtcattgatagcagtgtgtttt 507  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  26065723 attggaaccaataaatgtcatgcttaatatcattgatagcagtgtgtttt 26065772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 458 - 507
Target Start/End: Original strand, 26070608 - 26070657
Alignment:
Q  458 attggaaccaataaatgtcttgcttaatgtcattgatagcagtgtgtttt 507  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  26070608 attggaaccaataaatgtcatgcttaatatcattgatagcagtgtgtttt 26070657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 458 - 507
Target Start/End: Original strand, 26085692 - 26085741
Alignment:
Q  458 attggaaccaataaatgtcttgcttaatgtcattgatagcagtgtgtttt 507  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  26085692 attggaaccaataaatgtcatgcttaatatcattgatagcagtgtgtttt 26085741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 2936262 - 2936165
Alignment:
Q  124 tgttctgtcacctctgatatgattcatatcagggaagaac-tgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtga 221  Q
    |||||||||||||||||| ||||| ||||||| ||||||| ||| ||||| ||| | ||||||||| | |||||| ||| ||||||| |||||||||||    
T  2936262 tgttctgtcacctctgatgtgatttatatcagagaagaacatgtggtatcttgaaaagatatgcgcttatgaggcggat-aaatccttaaggacagtga 2936165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 458 - 507
Target Start/End: Original strand, 25524964 - 25525013
Alignment:
Q  458 attggaaccaataaatgtcttgcttaatgtcattgatagcagtgtgtttt 507  Q
    ||||||||||||||||||| |||||||||||| |||||||| ||||||||    
T  25524964 attggaaccaataaatgtcatgcttaatgtcactgatagcaatgtgtttt 25525013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 15518074 - 15518127
Alignment:
Q  178 aggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacg 231  Q
    ||||||||||| | |||||| |||| |||||||||||| ||||| |||||||||    
T  15518074 aggatatgcgcttatgaggcggatataatcctcaaggaaagtgactatgtcacg 15518127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 121 - 243
Target Start/End: Original strand, 127700 - 127822
Alignment:
Q  121 agttgttctgtcacctctgatatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtg 220  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||  | |||||| ||||||||||||||||||||||    
T  127700 agttgttctgtcacctctgacatgattcatatcagggaagaactgttgtatcatgggaggatatgcgtttctgaggcggataaaatcctcaaggacagtg 127799  T
Q  221 agtatgtcacgcctcagtttaga 243  Q
    | ||||||||||||||| |||||    
T  127800 actatgtcacgcctcaggttaga 127822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 121 - 236
Target Start/End: Original strand, 110121 - 110236
Alignment:
Q  121 agttgttctgtcacctctgatatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtg 220  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||| || |||||||||||  | |||||| ||||||||||||||||||||||    
T  110121 agttgttctgtcacctctgacatgattcatatcagcgaagaactgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtg 110220  T
Q  221 agtatgtcacgcctca 236  Q
    | ||||||||||||||    
T  110221 actatgtcacgcctca 110236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 114 - 237
Target Start/End: Complemental strand, 1789024 - 1788900
Alignment:
Q  114 aaatttaagttgttctgtcacctctgat-atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaa 212  Q
    |||||| ||||||||||||||||| | | |||||||||| | ||||||||||||||||||||| |||||||||||| | |||||| ||||||||||||||    
T  1789024 aaatttgagttgttctgtcacctccggttatgattcataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaa 1788925  T
Q  213 ggacagtgagtatgtcacgcctcag 237  Q
    ||||||||| |||||||||||||||    
T  1788924 ggacagtgactatgtcacgcctcag 1788900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 202 - 342
Target Start/End: Complemental strand, 17088806 - 17088678
Alignment:
Q  202 aaaatcctcaaggacagtgagtatgtcacgcctcagtttagagaatggtttattgttttgcaggttacatgagttgttgatagaagatgttgatagagtt 301  Q
    |||||||||||||||||||| ||||||||||||||| ||||| ||| ||||||||||||||||| |||           |||  ||||||||||||||||    
T  17088806 aaaatcctcaaggacagtgactatgtcacgcctcaggttagataattgtttattgttttgcaggctac-----------atatgagatgttgatagagtt 17088718  T
Q  302 gtatcggtgtctagttatacaaaatttcaatgacagctaag 342  Q
    ||||| |||||||||||||| ||||||||||||||||||||    
T  17088717 gtatcagtgtctagttatac-aaatttcaatgacagctaag 17088678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 141 - 267
Target Start/End: Original strand, 17028375 - 17028501
Alignment:
Q  141 tatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcagttt 240  Q
    ||||||||||| | ||||||||||||  ||||||| ||||||||||||   |||||| ||||||||||||||||||||||| | ||||||||||||| ||    
T  17028375 tatgattcataacggggaagaactgtcatatcctgggaggatatgcgctaatgaggcggataaaatcctcaaggacagtgactgtgtcacgcctcaggtt 17028474  T
Q  241 agagaatggtttattgttttgcaggtt 267  Q
    | | ||| || | ||||||||||||||    
T  17028475 acataatagtattttgttttgcaggtt 17028501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 141 - 267
Target Start/End: Original strand, 17558811 - 17558937
Alignment:
Q  141 tatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcagttt 240  Q
    ||||||||||| | ||||||||||||  ||||||| ||||||||||||   |||||| ||||||||||||||||||||||| | ||||||||||||| ||    
T  17558811 tatgattcataacggggaagaactgtcatatcctgggaggatatgcgctaatgaggcggataaaatcctcaaggacagtgactgtgtcacgcctcaggtt 17558910  T
Q  241 agagaatggtttattgttttgcaggtt 267  Q
    | | ||| || | ||||||||||||||    
T  17558911 acataatagtattttgttttgcaggtt 17558937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 141 - 237
Target Start/End: Complemental strand, 39655796 - 39655700
Alignment:
Q  141 tatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcag 237  Q
    ||||||||||| | | |||||||||||||||| || |||||||||| | | |||||| ||||||||||||||||||||||| |||||||||||||||    
T  39655796 tatgattcataacggagaagaactgttgtatcatgggaggatatgcacttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcag 39655700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 41740043 - 41739941
Alignment:
Q  19 acttcttgatcagaaaaataccacttttccaccaacacgaaagctctttctttctttccaatttttcttcctgggttacatctcctgtgtttatcaaatt 118  Q
    ||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||  ||||||||||||||  ||||||| |    |||||||||||||    
T  41740043 acttcctgatcagaaaaataccacttttccaccaacacaaaaactctttctttcttctcaatttttcttcctatgttacattttacatgtttatcaaatt 41739944  T
Q  119 taa 121  Q
    |||    
T  41739943 taa 41739941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 141 - 237
Target Start/End: Complemental strand, 21185418 - 21185322
Alignment:
Q  141 tatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcag 237  Q
    ||||||||||| | |||||||||| || ||| ||| |||||||||||| | |||||| ||||||||||||||||||||||| |||||||||| ||||    
T  21185418 tatgattcataacggggaagaactattatatgctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcttcag 21185322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 114 - 237
Target Start/End: Original strand, 38678679 - 38678800
Alignment:
Q  114 aaatttaagttgttctgtcacctctgat-atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaa 212  Q
    |||||| ||||||||||||||||| ||| |||||||||| | |||||  ||||||||||||||  ||||||||||| | |||| | ||| ||||||||||    
T  38678679 aaatttgagttgttctgtcacctccgattatgattcataacggggaa--actgttgtatcctgtaaggatatgcgcttatgagacggatcaaatcctcaa 38678776  T
Q  213 ggacagtgagtatgtcacgcctcag 237  Q
     |||| ||| |||||||||||||||    
T  38678777 agaca-tgactatgtcacgcctcag 38678800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 38676300 - 38676378
Alignment:
Q  114 aaatttaagttgttctgtcacctctgat-atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctt 191  Q
    |||||| ||||||||||||||||| ||| |||||||||| | |||||||| |||||||||||| |||||||||| ||||    
T  38676300 aaatttgagttgttctgtcacctccgattatgattcataacggggaagaattgttgtatcctgggaggatatgctcctt 38676378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 38676893 - 38676930
Alignment:
Q  200 ataaaatcctcaaggacagtgagtatgtcacgcctcag 237  Q
    |||||||||||||||||||||| |||||||||||||||    
T  38676893 ataaaatcctcaaggacagtgactatgtcacgcctcag 38676930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 106 - 322
Target Start/End: Original strand, 2353181 - 2353399
Alignment:
Q  106 tgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaa-ctgttgtatcctgagaggatatgcgcctttgaggcagataaa 204  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||| ||||||| || | | |||||| ||| ||    
T  2353181 tgtttatcaaattcaagttgttctgtcacctcttatatgattcatatcagagaagaacctgttgtatcctgggaggataagcacttatgaggcggat-aa 2353279  T
Q  205 atcctcaaggacagtgagtatgtcacgcctcagtttagagaatggtttattgttttgcaggttac--atgagttgttgatagaagatgttgatagagttg 302  Q
    ||||| ||||||| ||| |   ||| ||||||| ||| | || |||||||| |||||||||||||  ||||||||||| | ||  |||||||||||||||    
T  2353280 atccttaaggacaatgacttcatcatgcctcaggttatataacggtttattattttgcaggttacatatgagttgttggtggagaatgttgatagagttg 2353379  T
Q  303 tatcggtgtctagttataca 322  Q
    |||  |||  ||||||||||    
T  2353380 tatatgtgcttagttataca 2353399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 93 - 301
Target Start/End: Complemental strand, 26445239 - 26445029
Alignment:
Q  93 gttacatctcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaac-tgttgtatcctgagaggatatgcgcctt 191  Q
    |||| |||||||||||||| |||||| || ||||| |||| |||||||||||||||||||||||||||||| ||||||||| ||| ||||||| ||  |     
T  26445239 gttatatctcctgtgtttagcaaattcaaattgttatgtcgcctctgatatgattcatatcagggaagaacatgttgtatcttgacaggatatacgatta 26445140  T
Q  192 tgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcagtttagagaatggtttattgttttgcaggttac--atgagttgttgatagaagat 289  Q
    |||||| ||| ||||||| ||||||||||| | ||||| ||||||  ||| | |   ||||||| |||||||||||||  ||||||||||| |  | |||    
T  26445139 tgaggcggat-aaatccttaaggacagtgactttgtcatgcctcatgttatatatccgtttattattttgcaggttacatatgagttgttggtgaaggat 26445041  T
Q  290 gttgatagagtt 301  Q
     |||||||||||    
T  26445040 attgatagagtt 26445029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 87 - 221
Target Start/End: Complemental strand, 9372365 - 9372229
Alignment:
Q  87 tcctgggttacatc--tcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaa-ctgttgtatcctgagaggata 183  Q
    ||||||||||||||  || |||||||||||||||||||||| | |||||||||| ||||||||||||||||||| ||| ||||||||||||| || ||||    
T  9372365 tcctgggttacatcagtcatgtgtttatcaaatttaagttgctttgtcacctctcatatgattcatatcagggatgaacctgttgtatcctgggacgata 9372266  T
Q  184 tgcgcctttgaggcagataaaatcctcaaggacagtga 221  Q
    ||||| | |||||| ||  ||||||| |||||||||||    
T  9372265 tgcgcttatgaggc-gaataaatccttaaggacagtga 9372229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 120 - 266
Target Start/End: Complemental strand, 19930153 - 19930008
Alignment:
Q  120 aagttgttctgtcacctctgatatgattcatatcagggaagaac-tgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacag 218  Q
    |||||||||| ||||||||||| |||||||| |||||||||||| |||||||| ||| |||||||||||| | |||||| ||| ||||||| |||||| |    
T  19930153 aagttgttctatcacctctgatgtgattcatctcagggaagaacatgttgtat-ctgggaggatatgcgcttatgaggcggat-aaatccttaaggacgg 19930056  T
Q  219 tgagtatgtcacgcctcagtttagagaatggtttattgttttgcaggt 266  Q
    ||| | ||||||||||||  ||| | || |||||| | ||||||||||    
T  19930055 tgactttgtcacgcctcatgttatataacggtttactattttgcaggt 19930008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 101 - 217
Target Start/End: Original strand, 14658109 - 14658225
Alignment:
Q  101 tcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaa-ctgttgtatcctgagaggatatgcgcctttgaggcag 199  Q
    ||||||| ||||||| |||||||||||||||||||||||| ||||||||| | || ||||||  ||||||||||||  ||||||||||| | ||| ||||    
T  14658109 tcctgtgattatcaactttaagttgttctgtcacctctgacatgattcatgttagagaagaatttgttgtatcctggaaggatatgcgcttatgatgcag 14658208  T
Q  200 ataaaatcctcaaggaca 217  Q
    || ||||||| |||||||    
T  14658209 at-aaatccttaaggaca 14658225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 62 - 159
Target Start/End: Complemental strand, 16366537 - 16366445
Alignment:
Q  62 ctctttctttctttccaatttttcttcctgggttacatctcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaa 159  Q
    ||||||||||||| ||||||||||||||||  ||||||||||||||| |||   |||  |||||||||||||||| ||||||||||||||| ||||||    
T  16366537 ctctttctttcttcccaatttttcttcctg--ttacatctcctgtgtatat---attcgagttgttctgtcacctttgatatgattcatattagggaa 16366445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 90 - 176
Target Start/End: Original strand, 14654840 - 14654929
Alignment:
Q  90 tgggttacatct--cctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaa-ctgttgtatcctga 176  Q
    ||||||||||||  |||||| ||||||| || ||||||||||||||||||||| ||||||||| |||| |||||| ||||||||||||||    
T  14654840 tgggttacatctttcctgtgattatcaacttcaagttgttctgtcacctctgacatgattcatgtcagagaagaacctgttgtatcctga 14654929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 164 - 266
Target Start/End: Complemental strand, 42253635 - 42253534
Alignment:
Q  164 tgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcagtttagagaatggtttattgttttgca 263  Q
    |||||||||||  |||||||||||| | |||||| | |||| |||| ||||||||||| | ||||||||||||  ||| | || |||||| | |||||||    
T  42253635 tgttgtatccttggaggatatgcgcttatgaggcgggtaaa-tccttaaggacagtgactttgtcacgcctcatgttatataacggtttactattttgca 42253537  T
Q  264 ggt 266  Q
    |||    
T  42253536 ggt 42253534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 8e-35; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 133 - 268
Target Start/End: Complemental strand, 9111646 - 9111511
Alignment:
Q  133 acctctgatatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgc 232  Q
    ||||||||||||||| ||||||| ||||||||||||||||||| || ||||||||| | |||||| ||||||||||||||||||||||| ||||||||||    
T  9111646 acctctgatatgatttatatcagtgaagaactgttgtatcctgggaagatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgc 9111547  T
Q  233 ctcagtttagagaatggtttattgttttgcaggtta 268  Q
    ||||| ||| | ||  ||||| | ||||||||||||    
T  9111546 ctcagattatataacagtttactattttgcaggtta 9111511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 114 - 237
Target Start/End: Complemental strand, 12141777 - 12141653
Alignment:
Q  114 aaatttaagttgttctgtcacctct-gatatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaa 212  Q
    |||||| |||||||||||||||||| | ||||||||||| | ||||| || |||||||||||| |||||||||||| | |||||| ||||||||||||||    
T  12141777 aaatttgagttgttctgtcacctctagttatgattcataacggggaataattgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaa 12141678  T
Q  213 ggacagtgagtatgtcacgcctcag 237  Q
    ||||||||| |||||||||||||||    
T  12141677 ggacagtgactatgtcacgcctcag 12141653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 141 - 267
Target Start/End: Complemental strand, 24981259 - 24981133
Alignment:
Q  141 tatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcagttt 240  Q
    ||||||||||| | ||||||||||||||||||||| ||||||||| || | |||||| ||||||||||||||||||  ||| ||||||||||||||| ||    
T  24981259 tatgattcataacggggaagaactgttgtatcctgggaggatatgtgcttatgaggcggataaaatcctcaaggacgctgactatgtcacgcctcaggtt 24981160  T
Q  241 agagaatggtttattgttttgcaggtt 267  Q
    | | ||| || | ||||||||||||||    
T  24981159 acataatagtattttgttttgcaggtt 24981133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 120 - 236
Target Start/End: Original strand, 43254114 - 43254230
Alignment:
Q  120 aagttgttctgtcacctctgatatgattcatatcagggaagaac-tgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacag 218  Q
    |||||||||||||||||||||||||||||||||  ||||||||| |||||||||||| |||||||||||| | |||||| ||  ||||||| ||||||||    
T  43254114 aagttgttctgtcacctctgatatgattcatatatgggaagaacatgttgtatcctgggaggatatgcgcttatgaggc-gaataaatccttaaggacag 43254212  T
Q  219 tgagtatgtcacgcctca 236  Q
    ||| | ||||||||||||    
T  43254213 tgactttgtcacgcctca 43254230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 114 - 213
Target Start/End: Original strand, 1953680 - 1953780
Alignment:
Q  114 aaatttaagttgttctgtcacctct-gatatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaa 212  Q
    |||||| |||||||||||||||||  | ||||||||||| ||||||||||||||||||||||| |||||||| ||| | |||||||||||||||||||||    
T  1953680 aaatttgagttgttctgtcacctcccgttatgattcataacagggaagaactgttgtatcctgggaggatattcgcttatgaggcagataaaatcctcaa 1953779  T
Q  213 g 213  Q
    |    
T  1953780 g 1953780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 9111721 - 9111649
Alignment:
Q  19 acttcttgatcagaaaaataccacttttccaccaacacgaaagctctttctttctttccaatttttcttcctgg 92  Q
    ||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||    
T  9111721 acttcttgatcagaaaa-taccacttttccaccaacacaaaaactctttctttcttcccaatttttcttcctgg 9111649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 114 - 221
Target Start/End: Complemental strand, 38825602 - 38825494
Alignment:
Q  114 aaatttaagttgttctgtcacctctgatatgattcatatcagggaagaac-tgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaa 212  Q
    ||||| ||||||||||| ||||| |||||||||||||| ||| ||||||| |||||||||||| |||||||||||  | |||||  ||||||||||| ||    
T  38825602 aaattcaagttgttctgccacctttgatatgattcatagcagagaagaacttgttgtatcctgggaggatatgcgtttatgaggaggataaaatccttaa 38825503  T
Q  213 ggacagtga 221  Q
    |||||||||    
T  38825502 ggacagtga 38825494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 97 - 237
Target Start/End: Complemental strand, 4242708 - 4242570
Alignment:
Q  97 catctcctgtgtttatcaaatttaagttgttctgtcacctctgat-atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgag 195  Q
    ||||||||||||||||   |||  ||||||||||||||||  ||| |||||||||| | ||||||||| ||||||||||| ||||||||||||   ||||    
T  4242708 catctcctgtgtttat---attcgagttgttctgtcaccttcgattatgattcataacggggaagaacagttgtatcctgggaggatatgcgctcatgag 4242612  T
Q  196 gcagataaaatcctcaaggacagtgagtatgtcacgcctcag 237  Q
     | |||||||||||||||||||  || ||||||||| |||||    
T  4242611 tcggataaaatcctcaaggacaacgattatgtcacgtctcag 4242570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 141 - 237
Target Start/End: Original strand, 47580415 - 47580513
Alignment:
Q  141 tatgattcatatcagggaagaactgttgtatcctga--gaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcag 237  Q
    ||||||||||| | ||||||| |||||||||||||   |||||||| ||| | |||||||||||||||| ||||||||| ||| |||||||||||||||    
T  47580415 tatgattcataacggggaagacctgttgtatcctggtggaggatattcgcttatgaggcagataaaatcttcaaggacattgactatgtcacgcctcag 47580513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 236
Target Start/End: Complemental strand, 38828812 - 38828689
Alignment:
Q  114 aaatttaagttgttctgtcacctctgatatgattcatatcagggaagaac-tgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaa 212  Q
    ||||| ||||||||||| || |||||||||||||||||  |||||||||| |||| ||||||| || |||||| || | | |||| ||||||||||| ||    
T  38828812 aaattcaagttgttctgccaactctgatatgattcatagtagggaagaacttgttttatcctgggaagatatgagcttataaggcggataaaatccttaa 38828713  T
Q  213 ggacagtgagtatgtcacgcctca 236  Q
    ||| ||||| |  |||||||||||    
T  38828712 ggatagtgacttcgtcacgcctca 38828689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 268
Target Start/End: Complemental strand, 49387699 - 49387576
Alignment:
Q  145 attcatatcagggaagaac-tgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcagtttaga 243  Q
    ||||| ||||||||||||| |||||||||||| |||||||||||| | | ||||  ||||| |||| |||| |||||| | ||||||||||||  ||| |    
T  49387699 attcacatcagggaagaacatgttgtatcctgggaggatatgcgcttataaggcgaataaa-tccttaaggccagtgactttgtcacgcctcatgttata 49387601  T
Q  244 gaatggtttattgttttgcaggtta 268  Q
     ||||| ||| ||||| ||||||||    
T  49387600 taatggattactgtttggcaggtta 49387576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 86 - 152
Target Start/End: Complemental strand, 21501411 - 21501345
Alignment:
Q  86 ttcctgggttacatctcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatat 152  Q
    ||||||||||| ||||| ||||||||  ||||| |||||||||| ||| ||||||||||||| ||||    
T  21501411 ttcctgggttatatctcttgtgtttagaaaattcaagttgttctatcatctctgatatgattgatat 21501345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 114 - 237
Target Start/End: Original strand, 51465487 - 51465601
Alignment:
Q  114 aaatttaagttgttctgtcacctctga-tatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaa 212  Q
    |||||| ||||||||||| ||||| || ||||||||||| | || ||||||||||||||||||  || ||||||||          |||||||||  |||    
T  51465487 aaatttgagttgttctgtaacctccgagtatgattcataacgggaaagaactgttgtatcctggaagaatatgcgc----------gataaaatctccaa 51465576  T
Q  213 ggacagtgagtatgtcacgcctcag 237  Q
    ||||||||| |||||||||||||||    
T  51465577 ggacagtgactatgtcacgcctcag 51465601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 5e-33; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 114 - 237
Target Start/End: Original strand, 2590493 - 2590617
Alignment:
Q  114 aaatttaagttgttctgtcacctctgat-atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaa 212  Q
    |||||| ||||||||||||||||| | | |||||||||| | ||||||||||||||||||||| |||||||||||| | ||||||  |||||||||||||    
T  2590493 aaatttgagttgttctgtcacctccggttatgattcataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcgaataaaatcctcaa 2590592  T
Q  213 ggacagtgagtatgtcacgcctcag 237  Q
    ||||||||| |||||||||||||||    
T  2590593 ggacagtgactatgtcacgcctcag 2590617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 121 - 243
Target Start/End: Original strand, 21189401 - 21189524
Alignment:
Q  121 agttgttctgtcacctct-gatatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagt 219  Q
    |||||||||||||||||  | ||||||||||| | ||||| ||||||||||||| | |||||||||||| | |||||| |||||||||||||||||||||    
T  21189401 agttgttctgtcacctccagttatgattcataacggggaataactgttgtatccggggaggatatgcgcttatgaggcggataaaatcctcaaggacagt 21189500  T
Q  220 gagtatgtcacgcctcagtttaga 243  Q
    || ||||||||||||||| |||||    
T  21189501 gactatgtcacgcctcaggttaga 21189524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 124 - 236
Target Start/End: Complemental strand, 18739226 - 18739113
Alignment:
Q  124 tgttctgtcacctctgat-atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgag 222  Q
    |||||||||||||| ||| |||||||||| | ||||||||| |||||||  || |||||||||||| | |||||| |||||||||||||||||||||||     
T  18739226 tgttctgtcacctccgattatgattcataacggggaagaaccgttgtattgtgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgac 18739127  T
Q  223 tatgtcacgcctca 236  Q
    ||||||||||||||    
T  18739126 tatgtcacgcctca 18739113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 97 - 184
Target Start/End: Original strand, 27107279 - 27107367
Alignment:
Q  97 catctcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaac-tgttgtatcctgagaggatat 184  Q
    |||||||||||||||||| ||| ||| |||||||||||||||||| ||||| | ||||||||||||| |||||||||||| ||||||||    
T  27107279 catctcctgtgtttatcagattcaagctgttctgtcacctctgatgtgatttacatcagggaagaacatgttgtatcctgggaggatat 27107367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 124 - 220
Target Start/End: Original strand, 1043148 - 1043244
Alignment:
Q  124 tgttctgtcacctctgat-atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtg 220  Q
    |||||||||||| | ||| |||||||||| | ||||||||| ||||||||||| |||||||||||||| |||| | ||||||||||||||||||||||    
T  1043148 tgttctgtcacccccgattatgattcataac-gggaagaacggttgtatcctgggaggatatgcgcctatgagacggataaaatcctcaaggacagtg 1043244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 114 - 267
Target Start/End: Complemental strand, 14433725 - 14433570
Alignment:
Q  114 aaatttaagttgttctgtcacctctgat-atgattcatatcagggaagaac-tgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctca 211  Q
    |||||| |||| ||||||||||| || | |||||||||| | ||||||||| ||||||||| || || ||| ||  | | |||||| |||||||||| ||    
T  14433725 aaatttgagttattctgtcacctttggttatgattcataacggggaagaacatgttgtatcttgggaagatgtgtacttatgaggcggataaaatccaca 14433626  T
Q  212 aggacagtgagtatgtcacgcctcagtttagagaatggtttattgttttgcaggtt 267  Q
    |||||||||| ||||||||||||||| ||| | ||  || ||||||||||||||||    
T  14433625 aggacagtgactatgtcacgcctcaggttacataacagtgtattgttttgcaggtt 14433570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 114 - 237
Target Start/End: Complemental strand, 35969398 - 35969278
Alignment:
Q  114 aaatttaagttgttctgtcacctc-tgatatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaa 212  Q
    |||||| ||||||||||| ||||| || ||||||||||| | ||||||||||||| || | || ||   ||||||| |||||||| ||||||||| ||||    
T  35969398 aaatttgagttgttctgttacctcctgttatgattcataacggggaagaactgtt-taacatgtga---tatgcgcttttgaggcggataaaatcttcaa 35969303  T
Q  213 ggacagtgagtatgtcacgcctcag 237  Q
    ||||||||| |||||||||||||||    
T  35969302 ggacagtgactatgtcacgcctcag 35969278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 8424424 - 8424480
Alignment:
Q  99 tctcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcag 155  Q
    ||||||| ||||||||||||||||||||||||||| ||||  |||||||||||||||    
T  8424424 tctcctgagtttatcaaatttaagttgttctgtcatctctagtatgattcatatcag 8424480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 145 - 204
Target Start/End: Complemental strand, 27083183 - 27083123
Alignment:
Q  145 attcatatcagggaagaac-tgttgtatcctgagaggatatgcgcctttgaggcagataaa 204  Q
    |||||||| |||||||||| |||||||||||| |||||||||||| | |||||| ||||||    
T  27083183 attcatattagggaagaacctgttgtatcctgggaggatatgcgcttgtgaggcggataaa 27083123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 306
Target Start/End: Complemental strand, 8388439 - 8388379
Alignment:
Q  248 ggtttattgttttgcaggttacat--gagttgttgatagaagatgttgatagagttgtatc 306  Q
    |||||||| ||||||| |||| ||  |||||||| || |||||||||||||||||||||||    
T  8388439 ggtttattattttgcaagttatatatgagttgttaatggaagatgttgatagagttgtatc 8388379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 81 - 152
Target Start/End: Complemental strand, 27083263 - 27083189
Alignment:
Q  81 ttttcttcctgggttacatctcctgtgtttatcaaatttaagttgttctg---tcacctctgatatgattcatat 152  Q
    |||| ||| ||||||  |||| |||||||||||| ||| ||||||||| |   ||||||||||||||||||||||    
T  27083263 ttttattcttgggttgaatcttctgtgtttatcagattcaagttgttcagcagtcacctctgatatgattcatat 27083189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 114 - 237
Target Start/End: Original strand, 11673994 - 11674117
Alignment:
Q  114 aaatttaagttgttctgtcacctctgat-atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaa 212  Q
    |||||| ||||||||||||||||| ||| |||||||||| | ||||| ||||||||||||||| |||||||||||| | |||||| ||||||||||||||    
T  11673994 aaatttgagttgttctgtcacctccgattatgattcataac-gggaacaactgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaa 11674092  T
Q  213 ggacagtgagtatgtcacgcctcag 237  Q
    ||||||||| |||||||| ||||||    
T  11674093 ggacagtgactatgtcacacctcag 11674117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 90 - 268
Target Start/End: Original strand, 13815707 - 13815885
Alignment:
Q  90 tgggttacatctcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaac-tgttgtatcctgagaggatatgcgc 188  Q
    |||||| |||||| ||||||||||| ||| ||| |||||||||||||||||| ||||||| || |||||||||| |||||||||||| || |||||||||    
T  13815707 tgggttgcatctcttgtgtttatcagattcaagctgttctgtcacctctgatgtgattcacattagggaagaacatgttgtatcctgggaagatatgcgc 13815806  T
Q  189 ctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcagtttagagaatggtttattgttttgcaggtta 268  Q
     | |||||| ||  ||||||| ||||||||||| | ||||||||||||  ||| | ||||| ||| ||||| ||||||||    
T  13815807 ttatgaggc-gaataaatccttaaggacagtgactttgtcacgcctcatgttatataatggattactgtttggcaggtta 13815885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 121 - 237
Target Start/End: Complemental strand, 31210193 - 31210076
Alignment:
Q  121 agttgttctgtcacctctgat-atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagt 219  Q
    ||||||||||||||||| ||| |||||||||| | |||||||||||||||| || | |||||||||| | | |||||| |||||||||||||||||||||    
T  31210193 agttgttctgtcacctccgattatgattcataacggggaagaactgttgtaccccgggaggatatgcacttatgaggcggataaaatcctcaaggacagt 31210094  T
Q  220 gagtatgtcacgcctcag 237  Q
    || |||||||||||||||    
T  31210093 gactatgtcacgcctcag 31210076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 121 - 237
Target Start/End: Original strand, 15569566 - 15569682
Alignment:
Q  121 agttgttctgtcacctctgatatgattcatatcagggaagaa-ctgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagt 219  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||| || | |||||| ||| ||||||  |||||||||    
T  15569566 agttgttctgtcacctctgatatgattcatatcagagaagaacctgttgtatcctgggaggatatgtgcttatgaggcggat-aaatccctaaggacagt 15569664  T
Q  220 gagtatgtcacgcctcag 237  Q
    || | |||||||||||||    
T  15569665 gactttgtcacgcctcag 15569682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 121 - 237
Target Start/End: Complemental strand, 31206744 - 31206627
Alignment:
Q  121 agttgttctgtcacctct-gatatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagt 219  Q
    |||||||||||||||||  | ||||||||||| | |||||||||||||||||||||  ||||||||||| | |||||  |||||||||||||| ||||||    
T  31206744 agttgttctgtcacctccagttatgattcataacggggaagaactgttgtatcctgccaggatatgcgcttatgaggtggataaaatcctcaaagacagt 31206645  T
Q  220 gagtatgtcacgcctcag 237  Q
    || |||||||||||||||    
T  31206644 gactatgtcacgcctcag 31206627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 114 - 237
Target Start/End: Complemental strand, 39426576 - 39426452
Alignment:
Q  114 aaatttaagttgttctgtcacctctgat-atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaa 212  Q
    |||||| ||||||||||||||||| | | |||||||||| ||||||||||||||| |||| || |||||||| ||| | |||| | ||||||||||||||    
T  39426576 aaatttgagttgttctgtcacctccggttatgattcataacagggaagaactgttttatcttgggaggatattcgcttatgagacggataaaatcctcaa 39426477  T
Q  213 ggacagtgagtatgtcacgcctcag 237  Q
    ||||||||| ||| |||||||||||    
T  39426476 ggacagtgactatatcacgcctcag 39426452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 105 - 266
Target Start/End: Complemental strand, 2609735 - 2609574
Alignment:
Q  105 gtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaac-tgttgtatcctgagaggatatgcgcctttgaggcagataa 203  Q
    ||||||| ||||||  |||||||||||||| |||||||||||||||||||| ||||||| |||||||||||| |||||||||||| | |||| ||||| |    
T  2609735 gtgtttaacaaattcgagttgttctgtcacatctgatatgattcatatcagagaagaacatgttgtatcctgcgaggatatgcgcttatgagacagat-a 2609637  T
Q  204 aatcctcaaggacagtgagtatgtcacgcctcagtttagagaatggtttattgttttgcaggt 266  Q
    ||| || ||||| ||||| |  |||||||||||| ||| | || || ||| | ||||||||||    
T  2609636 aatacttaaggatagtgacttcgtcacgcctcaggttatataaaggcttactattttgcaggt 2609574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 165 - 267
Target Start/End: Complemental strand, 22301224 - 22301122
Alignment:
Q  165 gttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcagtttagagaatggtttattgttttgcag 264  Q
    |||||||| || |||||||||||| | |||||| ||||||||||||||||||||||| ||||||||||||||| ||| | ||| || | |||||||||||    
T  22301224 gttgtatcttgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcaggttacataatagtattttgttttgcag 22301125  T
Q  265 gtt 267  Q
    |||    
T  22301124 gtt 22301122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 114 - 237
Target Start/End: Complemental strand, 3850665 - 3850540
Alignment:
Q  114 aaatttaagttgttctgtcacctctga-tatgattcatatcagggaagaact-gttgtatcctgagaggatatgcgcctttgaggcagataaaatcctca 211  Q
    |||||| ||||||||| |||||||||  ||||||||||| |  ||||||||| |||||||| |  |||||||||||| | ||||||  |||||||| |||    
T  3850665 aaatttgagttgttctatcacctctgggtatgattcataccgaggaagaactcgttgtatcataggaggatatgcgcttatgaggcgtataaaatcatca 3850566  T
Q  212 aggacagtgagtatgtcacgcctcag 237  Q
    |||||||||| |||||||||||||||    
T  3850565 aggacagtgactatgtcacgcctcag 3850540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 116 - 235
Target Start/End: Complemental strand, 32352551 - 32352432
Alignment:
Q  116 atttaagttgttctgtcacctctgatatgattcatatcagggaagaa-ctgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaagg 214  Q
    ||||||| |||||||||||||||||| ||||||||||| | ||||||  |||||| ||||| |||||||||||| | |||||| ||  ||||||| ||||    
T  32352551 atttaagctgttctgtcacctctgatgtgattcatatctgagaagaatatgttgtgtcctgggaggatatgcgcttatgaggc-gaataaatccttaagg 32352453  T
Q  215 acagtgagtatgtcacgcctc 235  Q
    ||||||| | |||||||||||    
T  32352452 acagtgactttgtcacgcctc 32352432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 96 - 204
Target Start/End: Original strand, 15169910 - 15170019
Alignment:
Q  96 acatctcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaa-ctgttgtatcctgagaggatatgcgcctttga 194  Q
    |||| ||| ||| |||||||||| |||||||||||||| |||||| ||||||||| | || |||||| ||||||||||||| |||||||||||  | |||    
T  15169910 acatttccagtgattatcaaattcaagttgttctgtcatctctgacatgattcatgttagagaagaacctgttgtatcctgtgaggatatgcgtttatga 15170009  T
Q  195 ggcagataaa 204  Q
    ||| ||||||    
T  15170010 ggctgataaa 15170019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 141 - 237
Target Start/End: Original strand, 82642 - 82738
Alignment:
Q  141 tatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcag 237  Q
    ||||||| ||| | ||||||||||||||||||||| |||||||||||| | |||||| ||||||||||||||||| ||||| |||||||||||||||    
T  82642 tatgatttataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggatagtgactatgtcacgcctcag 82738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 92 - 204
Target Start/End: Original strand, 448692 - 448802
Alignment:
Q  92 ggttacatctcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctt 191  Q
    |||| |||||||||||||||||| ||| |||||||| |||||||| ||||||||||||||| |||||| |  |||||||||| |||||||||||||  |     
T  448692 ggttgcatctcctgtgtttatcagattcaagttgttttgtcacctttgatatgattcatattagggaaca--tgttgtatcccgagaggatatgcgatta 448789  T
Q  192 tgaggcagataaa 204  Q
    |||||||||||||    
T  448790 tgaggcagataaa 448802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 98 - 197
Target Start/End: Original strand, 12090 - 12190
Alignment:
Q  98 atctcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaac-tgttgtatcctgagaggatatgcgcctttgagg 196  Q
    ||||| ||||||||||| |||  |||||||||||||||||||||||||||||||| |||||||||| |||||||||||  || ||||||||| | |||||    
T  12090 atctcatgtgtttatcagattggagttgttctgtcacctctgatatgattcatataagggaagaacttgttgtatcctaggatgatatgcgcttgtgagg 12189  T
Q  197 c 197  Q
    |    
T  12190 c 12190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0293 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 5022 - 4942
Alignment:
Q  141 tatgattcatatcagggaagaac-tgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtga 221  Q
    ||||||||||||||  ||||||| ||||||||| || ||||||||| || | |||||||||| ||||||| ||| |||||||    
T  5022 tatgattcatatcatagaagaacctgttgtatcttgggaggatatgtgcttatgaggcagat-aaatccttaagaacagtga 4942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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