View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14481_high_3 (Length: 481)
Name: NF14481_high_3
Description: NF14481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14481_high_3 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 160 - 481
Target Start/End: Original strand, 46503935 - 46504256
Alignment:
| Q |
160 |
attggatttaacattagtcctaaacatagaaatggtggagcttttctcccattctcaaaagaaagaaataactcatcttgtcaaggtcagggtcttcctg |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46503935 |
attggatttaacattagtcctaaacatagaaatggtggagcttttctcccattctcaaaagaaagaaataactcatcttgtcaaggtcagggtcttcctg |
46504034 |
T |
|
| Q |
260 |
aactagcactagcttctactcaaaaagaagaggataagaaacatgttggagaagcagaaaaagggaaaacaaattcagggaatgaagcagataatcaggg |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
46504035 |
aactagcactagcttctactcaaaaagaagaggataagaaacatgttggagaagcagaaaaagggaaaacaaattcagggaatgaagttgataatcaagg |
46504134 |
T |
|
| Q |
360 |
aaacggagaaccagaagcatgatatcaaactcagacaacaagcagtaagtccaaccatagtcataagaaagcaagaaggggatggtcacaagccttgcct |
459 |
Q |
| |
|
||| ||| |||| ||||| || ||||||||||||||||||| ||| || ||||| | ||||| ||||||||||||| | ||||||| || ||||| |
|
|
| T |
46504135 |
aaaaggaagtccagtagcatcatcacaaactcagacaacaagcaataattcaaaccaaactcataggaaagcaagaaggtgttggtcaccagacttgcac |
46504234 |
T |
|
| Q |
460 |
cgtagttttgttaatgctcttc |
481 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
46504235 |
cgtagatttgttaatgctcttc |
46504256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 46503782 - 46503865
Alignment:
| Q |
7 |
acatcatcagaaacattggaaaagacaacaaataataatgtatgtgatatggcaaattggatgacaagtgcacaattatggagc |
90 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46503782 |
acatcatcagaaacattggaaaagacaacaaataataatgtatgtgatatggcaaattggatgacaagtgcacaattatggagc |
46503865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University