View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14481_low_1 (Length: 938)
Name: NF14481_low_1
Description: NF14481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14481_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 515; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 300 - 921
Target Start/End: Original strand, 4206724 - 4207344
Alignment:
| Q |
300 |
aattgaaccaaatggaaaataaaactttttcctgcatttatttagttaatttgaagaattatgacaacagatagaatttgtatgttatgtgagacactat |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
4206724 |
aattgaaccaaatggaaaataaaactttttcctgcatttatttagttaatttgaagaattatgacaacatatagaatttgtatgttatgtgagacagtat |
4206823 |
T |
|
| Q |
400 |
tgtcacttgtcagagtgaatggtgttcactatggagaacagagacaacttt-ctaatgaaaacttagagaaaaattatgtttaaatatcttggtttatct |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4206824 |
tgtcacttgtcagagtgaatggtgttcactatggagaagagagacagcttttctaatgaaaacttagagaaaaattatgtttaaatatcttggtttgtct |
4206923 |
T |
|
| Q |
499 |
attggtgggaacccaagcaaattggtattttgtgaacttttgattgaggatctgagtgaaaattcaatttgggagaatcgtaaattatctatgagttgaa |
598 |
Q |
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| T |
4206924 |
attggtgggaacccaagaaaattggtattttttgaacttttgatt-aggatctgagtgaaaattcaatttgggagaatcgtaaattatctatgagttgaa |
4207022 |
T |
|
| Q |
599 |
gtggtcatggtcacatggaattaagctgagagttaactttggataccaaaatgatcatttaagagagaagctaaattaattaaacaatacaagtgaaagt |
698 |
Q |
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| T |
4207023 |
gtggtcatggtcacatggaattaagctgagagttaactttggataccaaaatgatcatttaagagagaagctaaattaattaaataatacaagtgaaagc |
4207122 |
T |
|
| Q |
699 |
aatgtaattttgtgaaatagtcgtaatgtactgttgcgcgatattaagcatttttgaattgtagtggatggtttgggatttaaacttccttattgtattt |
798 |
Q |
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| T |
4207123 |
aatgtaatttcgtgaa-tagtcgtgatgtactgttgcgcgatattaagcatttttgaattgtagtggacggtttgggatttgaatttccttctcgtattt |
4207221 |
T |
|
| Q |
799 |
gttgttggctatgcattctctttagttcttgtttagctttttatgaccgtttgccttcatttttgtatcgtgtaacttattttcttggcatgtcttatgt |
898 |
Q |
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|||||||| |||||||| ||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4207222 |
gttgttggttatgcattgtctttagttcttgtttaactttttatgatcgtttgccttcacttttgtatcgtgtaacttattttcttggcatgtcttatgt |
4207321 |
T |
|
| Q |
899 |
caagataaaataaatgaattata |
921 |
Q |
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||||||||||||||||||||||| |
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| T |
4207322 |
caagataaaataaatgaattata |
4207344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 23 - 247
Target Start/End: Original strand, 4206457 - 4206683
Alignment:
| Q |
23 |
cactttgattgggacgactctaaaccttgttttgagtatcatatttagagctcaagctttatc--gtgtgacaacttgtagttgggaaaatttttgagaa |
120 |
Q |
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| T |
4206457 |
cactttgattgggacgactctaaaccttgttttgagtatcatatttagagctcaagctttatctcgtgtgacaacttgtagttgggaaaatttttgagaa |
4206556 |
T |
|
| Q |
121 |
caaatattggttaaggtggattttgttaaaccatacggatcaagcatggcatgttttattataggcaaaagttagtatattagatgcttttatagacaaa |
220 |
Q |
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| T |
4206557 |
caaatattggttaaggtggattttgttaaacaatacggatcaagcatggcatgttttattataggcaaaagttagtatattagatgtttttatagacaaa |
4206656 |
T |
|
| Q |
221 |
ttgatcacggcatgtagttgtggtaga |
247 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
4206657 |
ttgatcacggcatgtagttgtggtaga |
4206683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 3e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 592 - 751
Target Start/End: Complemental strand, 33418131 - 33417972
Alignment:
| Q |
592 |
agttgaagtggtcatggtcacatggaattaagctgagagttaactttggataccaaaatgatcatttaagagagaagctaaattaattaaacaatacaag |
691 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| | ||||| ||||| |||| |||||||||||||||||||||| |
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| T |
33418131 |
agttgaagtggtcgtggtctcatggaattaagctgagagttaactttggataccaaactcatcatctaagaaagaaattaaattaattaaacaatacaag |
33418032 |
T |
|
| Q |
692 |
tgaaagtaatgtaattttgtgaaatagtcgtaatgtactgttgcgcgatattaagcattt |
751 |
Q |
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| ||| |||||||||||||||||||||||| |||||| || || ||||||||||||| |
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| T |
33418031 |
tcgaagcaatgtaattttgtgaaatagtcgtgatgtacaattttgcaatattaagcattt |
33417972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 590 - 692
Target Start/End: Complemental strand, 38881454 - 38881352
Alignment:
| Q |
590 |
tgagttgaagtggtcatggtcacatggaattaagctgagagttaactttggataccaaaatgatcatttaagagagaagctaaattaattaaacaataca |
689 |
Q |
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|||||| |||||||| |||||||||||||||||||| |||||||||||| ||||||||| | |||||||||||||||| ||||||||||||| ||||||| |
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| T |
38881454 |
tgagttaaagtggtcgtggtcacatggaattaagctaagagttaactttagataccaaactcatcatttaagagagaaactaaattaattaagcaataca |
38881355 |
T |
|
| Q |
690 |
agt |
692 |
Q |
| |
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||| |
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|
| T |
38881354 |
agt |
38881352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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