View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14481_low_7 (Length: 275)
Name: NF14481_low_7
Description: NF14481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14481_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 7058468 - 7058724
Alignment:
| Q |
1 |
tgcaactgtgaaggtaagagattattaataacaagtgatattttgttctattaagaaaaaacaatcaatttggtgaaaacaattaagtgtctttgatgag |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
7058468 |
tgcaactgtgaaggtaagagattattaataacaagtgatattttgttctattaagaaaaaacactcaatttggtgaaaacatttaagtgtctttgatgaa |
7058567 |
T |
|
| Q |
101 |
attgtgcaatttccttacatcaattttcatgtaattaattttgcagggttcaggacatatagctcctgagtacactcctgagttatgttttcctatgttc |
200 |
Q |
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|||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
7058568 |
attgtgtaatttccttatatcaattttcatgtaattaattttgcagggttcaggacatatagctcctgagtacactcctgagctatgttttcccatgttc |
7058667 |
T |
|
| Q |
201 |
actagatggatatctaatttgcctttgtaaatcaaaagcctaagatggcataaatat |
257 |
Q |
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||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
7058668 |
actaggtggatatctaatttgcctttgtaaatcagaagcctaagatggcataaatat |
7058724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 7049547 - 7049809
Alignment:
| Q |
1 |
tgcaactgtgaaggtaagagattattaataa-----caagtgatattttgttctattaagaaaaaacaatcaatttggtgaaaacaattaagtgtctttg |
95 |
Q |
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||||||||||||||||||| ||||||||| | ||||| | ||||||||| ||||| ||||||| | ||||| ||||||||| |||||||||| || |
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| T |
7049547 |
tgcaactgtgaaggtaagaaattattaattaaatcacaagtactcttttgttcttttaagtaaaaacacttaatttcgtgaaaacatttaagtgtctctg |
7049646 |
T |
|
| Q |
96 |
atgagattgtgcaatttccttacatcaattttcatgtaattaa-ttttgcagggttcaggacatatagctcctgagtacactcctgagttatgttttcct |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7049647 |
atgagattgtgcaatttccttacatcaattttcatgtaattaaattttgcagggttcaggacatatagctcctgagtacactcctgagctatgttttccc |
7049746 |
T |
|
| Q |
195 |
atgttcactagatggatatctaatttgcctttgtaaatcaaaagcctaagatggcataaatat |
257 |
Q |
| |
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|||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
7049747 |
atgttctctaggtggatatctaatttgcctttgtaaatcataagcctaagatggcataaatat |
7049809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 85 - 231
Target Start/End: Original strand, 7007965 - 7008111
Alignment:
| Q |
85 |
aagtgtctttgatgagattgtgcaatttccttacatcaattttcatgtaattaattttgcagggttcaggacatatagctcctgagtacactcctgagtt |
184 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
7007965 |
aagtgtctttgatgagattgtgcaatttccttacatcaattttcatgtaattaattttgcagggttctggacatatagctccttagtacactcctgagca |
7008064 |
T |
|
| Q |
185 |
atgttttcctatgttcactagatggatatctaatttgcctttgtaaa |
231 |
Q |
| |
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||||||||| |||||| ||| |||||||||||||||| |||||||| |
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| T |
7008065 |
atgttttcccatgttccttaggtggatatctaatttgcgtttgtaaa |
7008111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 7042394 - 7042656
Alignment:
| Q |
1 |
tgcaactgtgaaggtaagagattattaataaca-----agtgatattttgttctattaagaaaaa-acaatcaatttggtgaaaacaattaagtgtcttt |
94 |
Q |
| |
|
||||||||||||||||||| |||| |||| | | |||| | |||||||| |||| ||||| ||| |||||||||||| || | |||||||||| |
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| T |
7042394 |
tgcaactgtgaaggtaagaaattagtaattaaatcataagtgctcttttgttcatttaataaaaacacactcaatttggtgagaatatgcaagtgtcttt |
7042493 |
T |
|
| Q |
95 |
gatgagattgtgcaatttccttacatcaattttcatgtaattaattttgcagggttcaggacatatagctcctgagtacactcctgagttatgttttcct |
194 |
Q |
| |
|
||||||||||| ||| || ||| ||| |||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||| |
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| T |
7042494 |
gatgagattgtacaacatctttagatcgattttcgtgtaattaattttgcagggttcgggacatacagctcctgagtacactcctgagcaatgttttccc |
7042593 |
T |
|
| Q |
195 |
atgttcactagatggatatctaatttgcctttgtaaatcaaaagcctaagatggcataaatat |
257 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| || | ||||||| |||||||| |
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|
| T |
7042594 |
atgttcactaggtggatatctaatttgcctttgtaaatcagaatctcaagatggaataaatat |
7042656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 121 - 231
Target Start/End: Original strand, 7006155 - 7006265
Alignment:
| Q |
121 |
caattttcatgtaattaattttgcagggttcaggacatatagctcctgagtacactcctgagttatgttttcctatgttcactagatggatatctaattt |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||| |
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| T |
7006155 |
caattttcatgtaattaattttgcagggttcaggacatacagctcctgagtacactcctgagcaatgttttcccatgttcactaggtggatatctaattt |
7006254 |
T |
|
| Q |
221 |
gcctttgtaaa |
231 |
Q |
| |
|
||||||||||| |
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|
| T |
7006255 |
gcctttgtaaa |
7006265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 131 - 258
Target Start/End: Original strand, 7022817 - 7022943
Alignment:
| Q |
131 |
gtaattaattttgcagggttcaggacatatagctcctgagtacactcctgagttatgttttcctatgttcactagatggatatctaatttgcctttgtaa |
230 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| | | ||||||| ||||||| | ||||||||||| |||||||||||||||||||||||| |
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| T |
7022817 |
gtaattaattttgcagggttcaggacatacagctcctgcggatgctcctgaacaatgttttgccatgttcactaggtggatatctaatttgcctttgtaa |
7022916 |
T |
|
| Q |
231 |
atcaaaagcctaagatggcataaatatg |
258 |
Q |
| |
|
|||||||| || | |||||||||||||| |
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|
| T |
7022917 |
atcaaaag-ctgatatggcataaatatg |
7022943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 141 - 234
Target Start/End: Original strand, 6997402 - 6997495
Alignment:
| Q |
141 |
ttgcagggttcaggacatatagctcctgagtacactcctgagttatgttttcctatgttcactagatggatatctaatttgcctttgtaaatca |
234 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| ||||||| | ||||||||||| ||||||||||| |||||||||||||||| |
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|
| T |
6997402 |
ttgcagggttcaggacatacagctcctgagtacactcctgagcaatgttttgccatgttcactaggtggatatctaacttgcctttgtaaatca |
6997495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 132 - 247
Target Start/End: Original strand, 7015916 - 7016030
Alignment:
| Q |
132 |
taattaattttgcagggttcaggacatatagctcctgagtacactcctgagttatgttttcctatgttcactagatggatatctaatttgcctttgtaaa |
231 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||| ||||||| || |
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|
| T |
7015916 |
taattaattttgcagggttcaggacatacagctcctgagtacactcctgatcaatgttttggcatgttcactaggtggatatctaatttacctttgt-aa |
7016014 |
T |
|
| Q |
232 |
tcaaaagcctaagatg |
247 |
Q |
| |
|
||| |||| ||||||| |
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|
| T |
7016015 |
tcagaagcataagatg |
7016030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 230
Target Start/End: Original strand, 7029531 - 7029671
Alignment:
| Q |
90 |
tctttgatgagattgtgcaatttccttacatcaattttcatgtaattaattttgcagggttcaggacatatagctcctg-agtacactcctgagttatgt |
188 |
Q |
| |
|
||||||||| || ||||| | || ||| ||||||||| ||||||||||||||||||||||||||||| |||||||| ||| |||||||||| |||| |
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| T |
7029531 |
tctttgatgtgactgtgctaatttgttatatcaatttttgggtaattaattttgcagggttcaggacatacagctcctgcagt-cactcctgagcaatgt |
7029629 |
T |
|
| Q |
189 |
tttcctatgttcactagatggatatctaatttgcctttgtaa |
230 |
Q |
| |
|
|| | |||||||| || |||| ||||||||||||||||||| |
|
|
| T |
7029630 |
ttagccatgttcaccaggtggacatctaatttgcctttgtaa |
7029671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 7007162 - 7007247
Alignment:
| Q |
1 |
tgcaactgtgaaggtaagagattattaataa-----caagtgatattttgttctattaagaaaaaacaatcaatttggtgaaaaca |
81 |
Q |
| |
|
||||||||||||||||||| ||||||||| | |||||| | ||||||||| ||||||||||||| ||||||||||||||||| |
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|
| T |
7007162 |
tgcaactgtgaaggtaagaaattattaattaaatcacaagtgctcttttgttcttttaagaaaaaacagtcaatttggtgaaaaca |
7007247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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