View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14482_low_1 (Length: 546)
Name: NF14482_low_1
Description: NF14482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14482_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 76 - 529
Target Start/End: Complemental strand, 47592189 - 47591731
Alignment:
| Q |
76 |
gatgaaaatgttgaatttatttcatgatgaaaatataccagaagcggaggaagtgcacatgtaagaaacaattttggtaaatgaaaagtccaaatggtta |
175 |
Q |
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| T |
47592189 |
gatgaaaatgttgaatttatttcatgatgaaaatataccagaagcagaggaaatgcacatgtaagaaacaattttggtaaatgaaaagtccaaatggtta |
47592090 |
T |
|
| Q |
176 |
agttaagtcaacagttaacctgttacatggcatgcaacacaattagtgatttatgagaaagtatttgctnnnnnnnnnntggtggagaaagtagatatcg |
275 |
Q |
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| T |
47592089 |
agttaagtcaacagttaacctgttacatggcatgcaacacaattagtgatttatgagaaagtatttgctaaaaaaaat-tggtggagaaagtagatatcg |
47591991 |
T |
|
| Q |
276 |
tagtaaaag-aatgaaatttaaccacaaatagtctgaaatagtaggtagatagtgtaataaataaatggaagagatttatgtgattaaatttgatggtaa |
374 |
Q |
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| T |
47591990 |
tagtaaaaggaatgaaatttaactacagatagtctgaaatagtaggtagatagtgtaataaataaatggaagagatttatgtgattaaatttgatggtaa |
47591891 |
T |
|
| Q |
375 |
gattaatgtcattaataaagcaaagattgatat-----aatataatatgcatgattaaattaattaggaatcgaaaagctgacctgagtttttcgacagg |
469 |
Q |
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| T |
47591890 |
gattaatgtcattaataaagcaaagattgatatgatataatataatatgcatgatttaattaattaggaatcgaaaagctgacctgagtttttcgacagg |
47591791 |
T |
|
| Q |
470 |
aaggatacccagatcaatgttgcataccggacaggaatcaacctcttcatctgaaagttt |
529 |
Q |
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| T |
47591790 |
aaggatacccagatcaatgttgcataccggacaggaatcaacctcttcatctgaaagttt |
47591731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 47592289 - 47592181
Alignment:
| Q |
1 |
tcactgagtgggattttcacattgactactgcataaacaccagttttcaatcatcaccaaaaatgagacgaggaagatgaaaatgttgaatttatttcat |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47592289 |
tcactgagtgggattttcacattgactactacataaacaccagttttcaatcgtcaccaaaaatgagacgaggaagatgaaaatgttgaatttatttcat |
47592190 |
T |
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| Q |
101 |
gatgaaaat |
109 |
Q |
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| T |
47592189 |
gatgaaaat |
47592181 |
T |
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