View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14482_low_2 (Length: 522)
Name: NF14482_low_2
Description: NF14482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14482_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 171 - 500
Target Start/End: Original strand, 30135838 - 30136169
Alignment:
| Q |
171 |
aaagctaaacaccaaaaagttctcattttcaagcaaatgaaaagcttgtggtacatagttcaatgacttgcaatgtgtaagtgaacttggttttgattca |
270 |
Q |
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| T |
30135838 |
aaagctaaacaccaaaaagttctcattttcaagcaaatgaaaagcttgtggcacatagttcaatgacttgcaatgtgtaggtgaacttggttttgattca |
30135937 |
T |
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| Q |
271 |
gaaactttctcttcttccattgaatccaatcccattaaccttgcaactacaccagaa---gaagaagaagaaattatagttcttgtagtagtaggagtgt |
367 |
Q |
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| T |
30135938 |
gaaactttatcttcttccattgaatc-aatcccattaaccttgcaactacaccagaagaagaagaagaagaaattatagttcttgtagtagtaggagtgt |
30136036 |
T |
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| Q |
368 |
tagtcttaaatttttgaactttttcacttacaatgaactttgaatgaaactctctaatcctatgaaaaatggttgtgaaacaccctgcagcaacagtttt |
467 |
Q |
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| T |
30136037 |
tagtcttaaatttttgaactttttcacttacaatgaactttgaatgaaactctctaatcctatgaaaaatggttgtgaaacaccctgcagcaacagtttt |
30136136 |
T |
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| Q |
468 |
tgagctgcaaaatgttgagtcaaagctaaagtt |
500 |
Q |
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| T |
30136137 |
tgagctgcaaaatgttgagtcaaagctaaagtt |
30136169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 30135686 - 30135720
Alignment:
| Q |
19 |
ccaactgccttaaacaaactcttctcaaaatgaaa |
53 |
Q |
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| T |
30135686 |
ccaactgccttaaacaaactcttctcaaaatgaaa |
30135720 |
T |
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