View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14482_low_3 (Length: 441)
Name: NF14482_low_3
Description: NF14482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14482_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 406; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 10 - 423
Target Start/End: Complemental strand, 28575236 - 28574823
Alignment:
| Q |
10 |
aatactgacggagcgtgtaaggatggtagcatcgcggggtgtggaggacttatccgaggttcgcaaggcgagtggttagcggggttctccaaatttttag |
109 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28575236 |
aatactgacggagcgtgtaaggatggtagtatcgcggggtgtggaggacttatccgaggttcgcaaggcgagtggttagcggggttctccaaatttttag |
28575137 |
T |
|
| Q |
110 |
ggaagtgtgatgcttttattgcagagctatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28575136 |
ggaagtgtgatgcttttattgcagagctatggggagttttggaaggtctccgatgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattc |
28575037 |
T |
|
| Q |
210 |
tctggtggttgtgaatattattacgagtgggaaggaaagcaatgcgaggggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28575036 |
tctggtggttgtgaatattattacgagtgggaaggaaagcaatgcgaggggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaa |
28574937 |
T |
|
| Q |
310 |
gtgaaggttaaacactcgtatcgtgaagcaaataggtgcgctgatgcgttagctaatattggatgtatcatggagaatgagatgatgttttatgagtcgt |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28574936 |
gtgaaggttaaacactcgtatcgtgaagcaaataggtgcgctgatgcgttagctaatattggatgtatcatggagaatgagatgatgttttatgagtcgt |
28574837 |
T |
|
| Q |
410 |
gtccgactcaaatt |
423 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
28574836 |
gtccgactcaaatt |
28574823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 327 - 423
Target Start/End: Original strand, 32971687 - 32971783
Alignment:
| Q |
327 |
gtatcgtgaagcaaataggtgcgctgatgcgttagctaatattggatgtatcatggagaatgagatgatgttttatgagtcgtgtccgactcaaatt |
423 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32971687 |
gtatcgtgaagcaaataggtgcgctgatacgttagctaatattggatgtatcatgggaaatgagatgatgttttatgagtcgtgtccgactcaaatt |
32971783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 146 - 277
Target Start/End: Complemental strand, 38658365 - 38658234
Alignment:
| Q |
146 |
ttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctctggtggttgtgaatattattacgagtgggaagga |
245 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| | ||||| |||||| | ||||||| | |||| || ||||| || |||| || |||||||| |
|
|
| T |
38658365 |
ttttggaaggtctccggtgtgcgaaacgaatggggtttatagcagttgaattacaagtggattttttggttgtggtgaacataattatgaaggggaagga |
38658266 |
T |
|
| Q |
246 |
aagcaatgcgaggggtaggagtcttgttcaaa |
277 |
Q |
| |
|
| |||| ||| || |||||||||||||||| |
|
|
| T |
38658265 |
tatcaattcgattggaaggagtcttgttcaaa |
38658234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 423
Target Start/End: Original strand, 5472114 - 5472164
Alignment:
| Q |
373 |
tgtatcatggagaatgagatgatgttttatgagtcgtgtccgactcaaatt |
423 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||| || ||||||||| |
|
|
| T |
5472114 |
tgtatcatggggaatgagatgatgtattatgagtcgtgcccaactcaaatt |
5472164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 10 - 423
Target Start/End: Original strand, 16237208 - 16237621
Alignment:
| Q |
10 |
aatactgacggagcgtgtaaggatggtagcatcgcggggtgtggaggacttatccgaggttcgcaaggcgagtggttagcggggttctccaaatttttag |
109 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16237208 |
aatactgacggagcgtgtaaggatggtagtatcgcggggtgtggaggacttatccgaggttcgcaaggcgagtggttagcggggttctccaaatttttag |
16237307 |
T |
|
| Q |
110 |
ggaagtgtgatgcttttattgcagagctatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16237308 |
ggaagtgtgatgcttttattgcagagctatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattc |
16237407 |
T |
|
| Q |
210 |
tctggtggttgtgaatattattacgagtgggaaggaaagcaatgcgaggggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16237408 |
tctggtggttgtgaatattattacgagtgggaaggaaagcaatgcgaggggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaa |
16237507 |
T |
|
| Q |
310 |
gtgaaggttaaacactcgtatcgtgaagcaaataggtgcgctgatgcgttagctaatattggatgtatcatggagaatgagatgatgttttatgagtcgt |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
16237508 |
gtgaaggttaaacactcgtatcgtgaagcaaataggtgcgctgatgcgttagctaatattggatgtatcatggagaatgggatgatgttttatgagtcgt |
16237607 |
T |
|
| Q |
410 |
gtccgactcaaatt |
423 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
16237608 |
gtccgactcaaatt |
16237621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 246 - 423
Target Start/End: Original strand, 32407607 - 32407781
Alignment:
| Q |
246 |
aagcaatgcgaggggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaagtgaaggttaaacactcgtatcgtgaagcaaatagg |
345 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||| | |
|
|
| T |
32407607 |
aagcaatgcgagtggtaggagtcttgttcaaaaaattagaaaacttc---aaatggaatgggaagtgaaggttaaacactcgtattgtgaaacaaataag |
32407703 |
T |
|
| Q |
346 |
tgcgctgatgcgttagctaatattggatgtatcatggagaatgagatgatgttttatgagtcgtgtccgactcaaatt |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
32407704 |
tgcgctgatgcgttagctaatattggatgtatcatggggaatgagatgatgttttataagttgtgtccgactcaaatt |
32407781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 10 - 423
Target Start/End: Complemental strand, 20633428 - 20633015
Alignment:
| Q |
10 |
aatactgacggagcgtgtaaggatggtagcatcgcggggtgtggaggacttatccgaggttcgcaaggcgagtggttagcggggttctccaaatttttag |
109 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
20633428 |
aatactgacggagcttgtaaggatggtagtatcgcggggtgtggaggacttatcagaggttcggaaggcgagtggttagcggggttctccaaatttttag |
20633329 |
T |
|
| Q |
110 |
ggaagtgtgatgcttttattgcagagctatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20633328 |
ggaagtgtgatgcttttattgcagagctatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattc |
20633229 |
T |
|
| Q |
210 |
tctggtggttgtgaatattattacgagtgggaaggaaagcaatgcgaggggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaa |
309 |
Q |
| |
|
| ||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
20633228 |
tttggtggttgtgaatattattacgagtgagagggaaagcaatgcgagtggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatggaaa |
20633129 |
T |
|
| Q |
310 |
gtgaaggttaaacactcgtatcgtgaagcaaataggtgcgctgatgcgttagctaatattggatgtatcatggagaatgagatgatgttttatgagtcgt |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
20633128 |
gtgaaggttaaacactcgtatcgtgaagcaaataggtgcgctgatgcgttagctaatattggatgtatcatggggaatgagatgatgttttatgagtcgt |
20633029 |
T |
|
| Q |
410 |
gtccgactcaaatt |
423 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
20633028 |
gaccgactcaaatt |
20633015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 10 - 423
Target Start/End: Complemental strand, 48823459 - 48823046
Alignment:
| Q |
10 |
aatactgacggagcgtgtaaggatggtagcatcgcggggtgtggaggacttatccgaggttcgcaaggcgagtggttagcggggttctccaaatttttag |
109 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
48823459 |
aatactgacggagcttgtaaggatggtagtatcgcggggtgtggaggacttatcagaggttcggaaggcgagtggttagcggggttctccaaatttttag |
48823360 |
T |
|
| Q |
110 |
ggaagtgtgatgcttttattgcagagctatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattc |
209 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
48823359 |
ggaagagtgatgcttttattgcagagctatggggagttttggaaggtctccggtgtgcaaaacgtacagggttcactgcagtagaattaaatatggattc |
48823260 |
T |
|
| Q |
210 |
tctggtggttgtgaatattattacgagtgggaaggaaagcaatgcgaggggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaa |
309 |
Q |
| |
|
| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48823259 |
tttggtggttgtgaatattattacgagtgggggggaaagcaatgcgagtggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaa |
48823160 |
T |
|
| Q |
310 |
gtgaaggttaaacactcgtatcgtgaagcaaataggtgcgctgatgcgttagctaatattggatgtatcatggagaatgagatgatgttttatgagtcgt |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
48823159 |
gtgaaggttaaacactcgtatcgtgaagcaaataggtgcgctgatgcgttagctaatattggatgtatcatggggaatgagatgatgttttatgagtcgt |
48823060 |
T |
|
| Q |
410 |
gtccgactcaaatt |
423 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
48823059 |
gtccgactcaaatt |
48823046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 276 - 423
Target Start/End: Complemental strand, 11692118 - 11691973
Alignment:
| Q |
276 |
aaaaattagaaaacttcttcaaatggaatgggaagtgaaggttaaacactcgtatcgtgaagcaaataggtgcgctgatgcgttagctaatattggatgt |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11692118 |
aaaaattagaaaacttcttcaaatggaatgggaattgaaggttaaacac--gtatcgtgaagcaaataggtgcgctgatgcgttagctaatattggatgt |
11692021 |
T |
|
| Q |
376 |
atcatggagaatgagatgatgttttatgagtcgtgtccgactcaaatt |
423 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11692020 |
atcatggggaatgagatgatgttttatgagtcgtgtccgactcaaatt |
11691973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 314 - 423
Target Start/End: Complemental strand, 10449050 - 10448941
Alignment:
| Q |
314 |
aggttaaacactcgtatcgtgaagcaaataggtgcgctgatgcgttagctaatattggatgtatcatggagaatgagatgatgttttatgagtcgtgtcc |
413 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10449050 |
aggttaaaaactcgtatcgtgaagcaaataggtgcgctgatgcgttagctaatattggatgtatcatggggaatgagatgatgttttatgagtcgtgtct |
10448951 |
T |
|
| Q |
414 |
gactcaaatt |
423 |
Q |
| |
|
|||||||||| |
|
|
| T |
10448950 |
gactcaaatt |
10448941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 270 - 370
Target Start/End: Complemental strand, 17525922 - 17525822
Alignment:
| Q |
270 |
tgttcaaaaaattagaaaacttcttcaaatggaatgggaagtgaaggttaaacactcgtatcgtgaagcaaataggtgcgctgatgcgttagctaatatt |
369 |
Q |
| |
|
|||| |||||||||| |||||||| ||||| | |||||||||||||| |||| || ||||||||||| ||||||||| | |||| |||||||||||| |
|
|
| T |
17525922 |
tgttaaaaaaattaggcaacttctttaaatgaagtgggaagtgaaggtccaacattcttatcgtgaagccaataggtgcacatatgcattagctaatatt |
17525823 |
T |
|
| Q |
370 |
g |
370 |
Q |
| |
|
| |
|
|
| T |
17525822 |
g |
17525822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 65 - 423
Target Start/End: Complemental strand, 38833471 - 38833113
Alignment:
| Q |
65 |
gaggttcgcaaggcgagtggttagcggggttctccaaatttttagggaagtgtgatgcttttattgcagagctatggggagttttggaaggtctccggtg |
164 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38833471 |
gaggttcggaaggcgagtggttagcggggttctccaaatttttagggaagtgtgatgcttttattgcagagctatggggagttttggaaggtctccggtg |
38833372 |
T |
|
| Q |
165 |
tgcgaaacgtatggggttcactgcagtagaattaaatgtggattctctggtggttgtgaatattattacgagtgggaaggaaagcaatgcgaggggtagg |
264 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38833371 |
tgcaaaacgtatggggttcactgcagtagaattaaatgtggattctttggtggttgtgaatattattacgagtgggaaggaaagcaatgcgagtggtagg |
38833272 |
T |
|
| Q |
265 |
agtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaagtgaaggttaaacactcgtatcgtgaagcaaataggtgcgctgatgcgttagcta |
364 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38833271 |
agttttgttcaaaaaattagaaaacttcttcaaatggaatgggaagtgaaggttaaacattcgtatcgtgaagcaactaggtgcgctgatgcgttagcta |
38833172 |
T |
|
| Q |
365 |
atattggatgtatcatggagaatgagatgatgttttatgagtcgtgtccgactcaaatt |
423 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38833171 |
atattggatgtatcatggggaatgagatgatgttttatgagtcgtgtccgactcaaatt |
38833113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 137 - 408
Target Start/End: Original strand, 18185400 - 18185671
Alignment:
| Q |
137 |
tatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctctggtggttgtgaatattattacgag |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
|
|
| T |
18185400 |
tatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctttggtggttgtgaatattattacaag |
18185499 |
T |
|
| Q |
237 |
tgggaaggaaagcaatgcgaggggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaagtgaaggttaaacactcgtatcgtgaa |
336 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| | ||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
18185500 |
tgggaaggaaagcaatgcgagtggtaggagtcttgttcaaaaaattagaaaaattctttagatggaataggaagtgaaggttaaacacccgtatcgtgaa |
18185599 |
T |
|
| Q |
337 |
gcaaataggtgcgctgatgcgttagctaatattggatgtatcatggagaatgagatgatgttttatgagtcg |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
18185600 |
gcaaataggtgcgctgatgcgttagctaatattggatgtatcatggggaatgagatgatattttatgagtcg |
18185671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 304 - 423
Target Start/End: Complemental strand, 29752422 - 29752304
Alignment:
| Q |
304 |
tgggaagtgaaggttaaacactcgtatcgtgaagcaaataggtgcgctgatgcgttagctaatattggatgtatcatggagaatgagatgatgttttatg |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
29752422 |
tgggaagtgaaggttaaacactcgtatcgtgaagcaaataggtgcgctgatgcgttagctaatattgg-tgtatcatggggaatgagatgatgttttatg |
29752324 |
T |
|
| Q |
404 |
agtcgtgtccgactcaaatt |
423 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
29752323 |
agtcgtgtccgactcaaatt |
29752304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 38835922 - 38835871
Alignment:
| Q |
10 |
aatactgacggagcgtgtaaggatggtagcatcgcggggtgtggaggactta |
61 |
Q |
| |
|
|||||| ||| ||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
38835922 |
aatactaacgaagcttgtaaggatggtagtatcgcggggtgtggaggactta |
38835871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 137 - 423
Target Start/End: Original strand, 39180666 - 39180952
Alignment:
| Q |
137 |
tatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctctggtggttgtgaatattattacgag |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39180666 |
tatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctttggtggttgtgaatattattacgag |
39180765 |
T |
|
| Q |
237 |
tgggaaggaaagcaatgcgaggggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaagtgaaggttaaacactcgtatcgtgaa |
336 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39180766 |
tgggaaggaaagcaatgcgagtggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaagtgaaggttaaacactcgtatcgtgaa |
39180865 |
T |
|
| Q |
337 |
gcaaataggtgcgctgatgcgttagctaatattggatgtatcatggagaatgagatgatgttttatgagtcgtgtccgactcaaatt |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
39180866 |
gcaaataggtgcgctgatgcgttagctaatattagatgtatcatgaggaatgagatgatgttttatgagtcatgtccgactcaaatt |
39180952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 25 - 423
Target Start/End: Original strand, 18568658 - 18569057
Alignment:
| Q |
25 |
tgtaaggatggtagcatcgcggg-gtgtggaggacttatccgaggttcgcaaggcgagtggttagcggggttctccaaatttttagggaagtgtgatgct |
123 |
Q |
| |
|
||||||||||||| || ||||| | ||||| | ||||| |||||| | ||||||| ||||||| |||||||| ||||||||| ||||||||| ||| |
|
|
| T |
18568658 |
tgtaaggatggtaatattgcgggagcgtggatggcttattagaggtttgaaaggcgaatggttagtggggttcttcaaatttttggggaagtgtagcgct |
18568757 |
T |
|
| Q |
124 |
tttattgcagagctatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctctggtggttgtga |
223 |
Q |
| |
|
||| |||| |||||||||| |||||||||||||||| | ||||| |||| ||||||||||||||||||| | ||||||||||||||| |||||||| | | |
|
|
| T |
18568758 |
tttgttgcggagctatgggaagttttggaaggtctc-gatgtgcaaaacatatggggttcactgcagtatacttaaatgtggattctttggtggttataa |
18568856 |
T |
|
| Q |
224 |
atattattacgagtgggaaggaaagcaatgcgaggggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaagtgaaggttaaaca |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
18568857 |
atattattacgagtgggaaggaaagcaatgcaagtggtatgagtcttgttcaaaaaattagacaacttcttcaaatggaacaggaagtgaaagttaaaca |
18568956 |
T |
|
| Q |
324 |
ctcgtatcgtgaagcaaataggtgcgctgatgcgttagctaatattggatgtatcatggag-aatgagatgatgttttatgagtcgtgtccgactcaaat |
422 |
Q |
| |
|
||||||||||||| |||||| || ||||||||| |||||||||||||||||| |||||| | |||||||| |||| |||||||||||||| |||| |||| |
|
|
| T |
18568957 |
ctcgtatcgtgaaacaaatacgtacgctgatgcattagctaatattggatgtttcatggggaaatgagattatgtattatgagtcgtgtctgacttaaat |
18569056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 351 - 423
Target Start/End: Complemental strand, 2091133 - 2091061
Alignment:
| Q |
351 |
tgatgcgttagctaatattggatgtatcatggagaatgagatgatgttttatgagtcgtgtccgactcaaatt |
423 |
Q |
| |
|
|||||| |||||||||||||| |||| |||| | |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2091133 |
tgatgctttagctaatattgggtgtagaatggggtatgagatgatgttttatgagtcttgtccgactcaaatt |
2091061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 240 - 423
Target Start/End: Complemental strand, 36123966 - 36123781
Alignment:
| Q |
240 |
gaaggaaagcaatgcgaggggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaagtgaaggttaaacactcgtatcgtgaagca |
339 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||| |
|
|
| T |
36123966 |
gaaggaaagcaattcgagtggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatggaaagtgaaggttaaacactcatatcgtaaagca |
36123867 |
T |
|
| Q |
340 |
aataggtgcgctgatgcgttagctaatattggatgtatc--atggagaatgagatgatgttttatgagtcgtgtccgactcaaatt |
423 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36123866 |
aataggtgcgctgatgcgctagctaatattggatgtatcatatggggaatgagatgatgttttatgagtcgtgtccgactcaaatt |
36123781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 290 - 423
Target Start/End: Complemental strand, 24323603 - 24323470
Alignment:
| Q |
290 |
ttcttcaaatggaatgggaagtgaaggttaaacactcgtatcgtgaagcaaataggtgcgctgatgcgttagctaatattggatgtatcatggagaatga |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24323603 |
ttcttcaaatggaatgggaagtgaaggttaaacactcgtatcgtgaagcaaataggtgtgctgatgcgttagctaatattggatgtatcatggggaatga |
24323504 |
T |
|
| Q |
390 |
gatgatgttttatgagtcgtgtccgactcaaatt |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
24323503 |
gatgatgttttatgagtcgtgtccgactcaaatt |
24323470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 142 - 422
Target Start/End: Original strand, 14137690 - 14137961
Alignment:
| Q |
142 |
ggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctctggtggttgtgaatattattacgagtggga |
241 |
Q |
| |
|
|||||||||||||||||||||||||| | | | | ||||||||| | |||||||| ||||||||| | || | || ||||||||||||| ||| || |
|
|
| T |
14137690 |
ggagttttggaaggtctccggtgtgcaagaagattaaggttcactgtaatagaattatatgtggattttttgatcgtggtgaatattattatgaggaggc |
14137789 |
T |
|
| Q |
242 |
aggaaagcaatgcgaggggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaagtgaaggttaaacactcgtatcgtgaagcaaa |
341 |
Q |
| |
|
|||| || |||||||| |||||||| ||||||| || |||||||||||| |||||| || | |||| ||||||| || |||| ||||| ||| |
|
|
| T |
14137790 |
aggagagtaatgcgagtggtaggagccttgttct--------gacaacttcttcaaaaggaatgtgacgggaagattaaacattcatatcatgaagaaaa |
14137881 |
T |
|
| Q |
342 |
taggtgcgctgatgcgttagctaatattggatgtatcatggagaatgagatgatgttttatgagtcgtgtccgactcaaat |
422 |
Q |
| |
|
|| | ||||||| | || | |||||||||| | ||||||| |||||||||||| |||||||||||| ||| ||||| |||| |
|
|
| T |
14137882 |
tatgcgcgctgacgtgtcaactaatattgggt-tatcatgaagaatgagatgacgttttatgagtcatgttcgacttaaat |
14137961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 298 - 423
Target Start/End: Original strand, 5699592 - 5699717
Alignment:
| Q |
298 |
atggaatgggaagtgaaggttaaacactcgtatcgtgaagcaaataggtgcgctgatgcgttagctaatattggatgtatcatggagaatgagatgatgt |
397 |
Q |
| |
|
||||||||||| || |||||| |||||||||||||| ||||| ||| || | |||||| ||||||||||| || |||| |||| |||| ||| | | |
|
|
| T |
5699592 |
atggaatgggaggttaaggttcaacactcgtatcgtaaagcacataattgtgttgatgctttagctaatatggggtgtagaatgggtcatgaaatggtat |
5699691 |
T |
|
| Q |
398 |
tttatgagtcgtgtccgactcaaatt |
423 |
Q |
| |
|
|||||||||| ||||||||||||||| |
|
|
| T |
5699692 |
tttatgagtcttgtccgactcaaatt |
5699717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 5699423 - 5699476
Alignment:
| Q |
119 |
atgcttttattgcagagctatggggagttttggaaggtctccggtgtgcgaaac |
172 |
Q |
| |
|
|||||||||| || ||| | ||||||||||||||||||||||| | |||||||| |
|
|
| T |
5699423 |
atgcttttatagcggagttgtggggagttttggaaggtctccgatatgcgaaac |
5699476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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