View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14482_low_4 (Length: 430)
Name: NF14482_low_4
Description: NF14482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14482_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 115; Significance: 3e-58; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 44805810 - 44805924
Alignment:
| Q |
19 |
cgtaggccacgcaagattagatgttccagaaactttggaggaaattcatcatcatctacctttaacgatgcttctcctttctcctccaagtacctcttcg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44805810 |
cgtaggccacgcaagattagatgttccagaaactttggaggaaattcatcatcatctacctttaacgatgcttctcctttctcctccaagtacctcttcg |
44805909 |
T |
|
| Q |
119 |
ctgattccaaatctg |
133 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
44805910 |
ctgattccaaatctg |
44805924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 178 - 281
Target Start/End: Original strand, 44805969 - 44806068
Alignment:
| Q |
178 |
gaatgtttactatcttcaattcatcttcataataatatataccatgacagagaaactcttgcatggtacaaacttttggacaaagtatttagacactcac |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
44805969 |
gaatgtttactatcttcaattcatcttcataataata----ccatgacagagaaactcttgcatggtacaaacttttggacaaagtacttagacactcac |
44806064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 355 - 416
Target Start/End: Original strand, 44806142 - 44806203
Alignment:
| Q |
355 |
tgtatgtgtgcctagttggctagtttagtgaccaaacacttatgcctagacaagtatcttcc |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
44806142 |
tgtatgtgtgcctagttggctagtttagtgaccaaacacttgtgcctagacaagtattttcc |
44806203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 44797932 - 44797975
Alignment:
| Q |
28 |
cgcaagattagatgttccagaaactttggaggaaattcatcatc |
71 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
44797932 |
cgcaagattagatgttgcaaaaactttggaggaaattcatcatc |
44797975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 44801318 - 44801370
Alignment:
| Q |
19 |
cgtaggccacgcaagattagatgttccagaaactttggaggaaattcatcatc |
71 |
Q |
| |
|
||||||||||||||||| | | ||||||| ||||| ||||||||||||||||| |
|
|
| T |
44801318 |
cgtaggccacgcaagatgaaaggttccaggaacttgggaggaaattcatcatc |
44801370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 44793035 - 44793113
Alignment:
| Q |
19 |
cgtaggccacgcaagattagatgttccagaaactttggaggaaattcatcatcatctacctttaacgatgcttctcctttct |
100 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||| |||| ||| ||||| |||||| || |||||||||||||||||| |
|
|
| T |
44793035 |
cgtaggccgcgcaaggttagatgttccagaaactcctgaggcaat---tcatcgtctaccattgacgatgcttctcctttct |
44793113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 131
Target Start/End: Original strand, 44787288 - 44787330
Alignment:
| Q |
89 |
cttctcctttctcctccaagtacctcttcgctgattccaaatc |
131 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||| ||||| |
|
|
| T |
44787288 |
cttctcctttcttctccaagtacctcttcactgattctaaatc |
44787330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University