View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14483_high_15 (Length: 445)
Name: NF14483_high_15
Description: NF14483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14483_high_15 |
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| [»] scaffold1297 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 8 - 427
Target Start/End: Complemental strand, 8316932 - 8316513
Alignment:
| Q |
8 |
gagcagagaagaggagctgataaaaagatgaatggatccgaagaatttttactctccgattcaagatgctagagatccaagtattttgaagggatatatc |
107 |
Q |
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| T |
8316932 |
gagcagaaaaggggagctgataaaaagatgaatggatccgaagaatttttactctccgattcaagatgctagagatccaagtattttgaagggatatatc |
8316833 |
T |
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| Q |
108 |
acgcttgttattgatcagtaaagaaaatctttccaactccatgcttgagattgaagtaaggagaagtgctctgccaacaaaatttacaaactgctgctcc |
207 |
Q |
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| T |
8316832 |
acgcttgttattgatcagtaaagaaaatctttccaactccatgcttgagattgaagtaaggagaagtgctctgccaacaaaatttacaaactgctgctcc |
8316733 |
T |
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| Q |
208 |
tttttacctgattctattttcatcccgctctcaaaatctatctccacacgcctttcatatacttctgcatcgcgcaaattggctttatgattgccgcaaa |
307 |
Q |
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| T |
8316732 |
tttttacctgattctattttcatcccgctctcaaaatctatctccacacgcctttcatatacttctgcatcgcgcaaattggctttatgatttccgcaaa |
8316633 |
T |
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| Q |
308 |
catgacaccttggacatacagtcaatttatactgcatccaaaatcatcagagttacttaatttatcatcaatgttttggggtggactatcaaataagata |
407 |
Q |
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| T |
8316632 |
catgacaccttggacatacagtcaatttatactgcatccaaaatcatcagagttacttaatttatcatcaatgttttggggtggactatcaaataagata |
8316533 |
T |
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| Q |
408 |
acaagagggagaaaactaac |
427 |
Q |
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| T |
8316532 |
acaagagggagaaaactaac |
8316513 |
T |
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Target: scaffold1297 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1297
Description:
Target: scaffold1297; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 2046 - 2125
Alignment:
| Q |
27 |
ataaaaagatgaatggatccgaagaatttttactctccgatt---caagatgctagagatccaagtattttgaagggata |
103 |
Q |
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| T |
2046 |
ataaaaatatgaatggatcctaagattcttgactctcctattattcaagatggtagagatccatgtattttgaagtgata |
2125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 143
Target Start/End: Original strand, 28111704 - 28111777
Alignment:
| Q |
70 |
aagatgctagagatccaagtattttgaagggatatatcacgcttgttattgatcagtaaagaaaatctttccaa |
143 |
Q |
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| T |
28111704 |
aagatgctagagatccatgtattttgaagtgatacacaacgtttgttatagatcacaaaagaaaagttttccaa |
28111777 |
T |
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