View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14483_high_18 (Length: 414)
Name: NF14483_high_18
Description: NF14483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14483_high_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 34231881 - 34231486
Alignment:
| Q |
1 |
attgttccgtttagacggttgtcatttaaacgaaaatgaactagctgttgaaaacctgtaattttattcggcaatggacctcttaatttattatatgaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
34231881 |
attgttccgtttagacggttgtcatttaaacgaaaacgaactagctgttgaaaacctgtaattttatttggcaatggacctcttaatttattatatgaac |
34231782 |
T |
|
| Q |
101 |
aatctaatctaacaagttgagtcatcttaaataaggaaagtggaatttgtcctactaaattgtttgaatatagacggagttcttgcagtttggtcatccc |
200 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34231781 |
aatcgaatctaacaagttgagtcaacttaaataaggaaagtggaatttgtcctactaaattgtttgaatatagacggagttcttgcagtttggtcatccc |
34231682 |
T |
|
| Q |
201 |
gccaaatacatctggaatttgactgcttaatgaattgtatgaaagatccaagttaatgagatggcgaaggtttgaaagtgatgttggtagttcacctcca |
300 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
34231681 |
gccaaatacatctggaatttgaccgcttaatgaattgtatgaaagatccaagttaatgagatgtcgaaggtttgaaagtgatgttggtagttcacctcca |
34231582 |
T |
|
| Q |
301 |
atcttgttaccactcaaatctattattttaaatttgtttgacagatgaaaagaatccggcatttgaccactgagtacattgtcatcgagatacaga |
396 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34231581 |
atcttgttaccactcaaatctattatttgaaatttgtttgacagatgaaaagaatccgggatttgaccattgagtacattgtcatcgagatacaga |
34231486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 99 - 341
Target Start/End: Original strand, 42124625 - 42124867
Alignment:
| Q |
99 |
acaatctaatctaacaagttgagtcatcttaaataaggaaagtggaatttgtcctactaaattgtttgaatatagacggagttcttgcagtttggtcatc |
198 |
Q |
| |
|
|||||||||| | | ||| ||||||| ||||||| ||| ||||||||||||| |||||||||| ||| || | |||||||||||||||||||||| |
|
|
| T |
42124625 |
acaatctaatgtgaaaagctgagtcaagttaaatagtgaagatggaatttgtccttctaaattgttggaagttaaatcgagttcttgcagtttggtcatc |
42124724 |
T |
|
| Q |
199 |
ccgccaaatacatctggaatttgactgcttaatgaattgtatgaaagatccaagttaatgagatggcgaaggtttgaaagtgatgttggtagttcacctc |
298 |
Q |
| |
|
|| ||||| |||||||| ||||||| || |||||||| | ||||||||||| |||||| || ||||||||||||||||||||||| || |||||| |
|
|
| T |
42124725 |
ccaccaaacacatctgggatttgaccactaaatgaattccacccaagatccaagtgaatgagttgtcgaaggtttgaaagtgatgttggcagctcacctt |
42124824 |
T |
|
| Q |
299 |
caatcttgttaccactcaaatctattattttaaatttgtttga |
341 |
Q |
| |
|
|||| |||||||| |||||||||| | || |||||||||||| |
|
|
| T |
42124825 |
caattttgttacctctcaaatctaattcttgaaatttgtttga |
42124867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 34239633 - 34239357
Alignment:
| Q |
1 |
attgttccgtttagacggttgtcatttaaacgaaaatgaactagctgttgaaaacctgtaattttattcggcaatggacctcttaatttattatatgaac |
100 |
Q |
| |
|
|||||||| ||||| |||||||||||| | |||| || ||||| ||||||||||| ||||||||| | | |||||| |||||||||||| | || |
|
|
| T |
34239633 |
attgttccatttagcaagttgtcatttaacctcaaataaattagcttttgaaaacctgcaattttattatgtagtggaccctctaatttattataagcac |
34239534 |
T |
|
| Q |
101 |
aatctaatctaacaagttgagtcatcttaaataaggaaagtggaatttgtcctactaaattgtttgaatatagacggagttcttgcagtttggtcatccc |
200 |
Q |
| |
|
||||||| |||||||||| ||| |||||||| ||| ||||||||||||| |||| ||||| ||| |||| || | |||||||||||||||||| |
|
|
| T |
34239533 |
aatctaaatcaacaagttgattcaagttaaataatgaagatggaatttgtccttctaatttgttagaagctagatagaatacttgcagtttggtcatcct |
34239434 |
T |
|
| Q |
201 |
gccaaatacatctggaatttgactgcttaatgaattgtatgaaagatccaagttaatgagatggcgaaggtttgaaa |
277 |
Q |
| |
|
|||||||||||||| ||||||| ||| | ||||||| |||||||| ||||| ||||||| |||||||||||| |
|
|
| T |
34239433 |
accaaatacatctgggatttgaccgctaagtgaattgcctgaaagatacaagtggatgagattttgaaggtttgaaa |
34239357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 211 - 322
Target Start/End: Complemental strand, 41570876 - 41570765
Alignment:
| Q |
211 |
tctggaatttgactgcttaatgaattgtatgaaagatccaagttaatgagatggcgaaggtttgaaagtgatgttggtagttcacctccaatcttgttac |
310 |
Q |
| |
|
||||||||||||| || ||||||||| |||| || || || |||| |||||| |||||||||||||||||||||| || ||||||||||| ||||||| |
|
|
| T |
41570876 |
tctggaatttgaccactgaatgaattggatgacaggtctaaattaacgagatgttgaaggtttgaaagtgatgttggaagatcacctccaattttgttac |
41570777 |
T |
|
| Q |
311 |
cactcaaatcta |
322 |
Q |
| |
|
| |||||||||| |
|
|
| T |
41570776 |
cgctcaaatcta |
41570765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 247
Target Start/End: Complemental strand, 41712533 - 41712465
Alignment:
| Q |
178 |
agttcttgcagtttggtcatcccgccaaatacatctggaatttgactgcttaatgaattgtatgaaagat |
247 |
Q |
| |
|
|||||||||| |||||||||||| ||||| |||||||| ||||||| ||| ||||||||| ||||||||| |
|
|
| T |
41712533 |
agttcttgca-tttggtcatcccaccaaacacatctggtatttgaccgctaaatgaattgaatgaaagat |
41712465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 42118326 - 42118378
Alignment:
| Q |
229 |
aatgaattgtatgaaagatccaagttaatgagatggcgaaggtttgaaagtga |
281 |
Q |
| |
|
||||||||| | ||||||||||||| |||||| || |||||||||||||||| |
|
|
| T |
42118326 |
aatgaattggaagaaagatccaagtgaatgagttgttgaaggtttgaaagtga |
42118378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 84 - 277
Target Start/End: Original strand, 12249584 - 12249777
Alignment:
| Q |
84 |
taatttattatatgaacaatctaatctaacaagttgagtcatcttaaataaggaaagtggaatttgtcctactaaattgtttgaatatagacggagttct |
183 |
Q |
| |
|
|||||| |||| |||||||||||| ||||||||||||||| |||||||| |||| |||||||||||| ||| ||||||||| |||| ||||||| |
|
|
| T |
12249584 |
taatttgttatgcgaacaatctaatgtaacaagttgagtcaagttaaataatgaaaacggaatttgtccttgtaatttgtttgaagctagattgagttct |
12249683 |
T |
|
| Q |
184 |
tgcagtttggtcatcccgccaaatacatctggaatttgactgcttaatgaattgtatgaaagatccaagttaatgagatggcgaaggtttgaaa |
277 |
Q |
| |
|
||||||||||||||| | | ||| |||||||| ||||||| ||| ||||||||| |||||||||||| || ||||||| | |||||||||||| |
|
|
| T |
12249684 |
tgcagtttggtcatcgcactaaacacatctggtatttgaccgctaaatgaattgaatgaaagatccacgtgaatgagacgttgaaggtttgaaa |
12249777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 127 - 341
Target Start/End: Complemental strand, 25521972 - 25521758
Alignment:
| Q |
127 |
ttaaataaggaaagtggaatttgtcctactaaattgtttgaatatagacggagttcttgcagtttggtcatcccgccaaatacatctggaatttgactgc |
226 |
Q |
| |
|
|||||||| ||| |||||| |||||| |||| ||||| |||||||| ||||||||||| |||||||||||| || || || ||||| ||||||| | |
|
|
| T |
25521972 |
ttaaataacgaagatggaatctgtccttctaatttgttaaaatatagatcgagttcttgcaatttggtcatcccaccgaacacgtctgggatttgacctc |
25521873 |
T |
|
| Q |
227 |
ttaatgaattgtatgaaagatccaagttaatgagatggcgaaggtttgaaagtgatgttggtagttcacctccaatcttgttaccactcaaatctattat |
326 |
Q |
| |
|
| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| | ||| ||| ||| |||||| ||| ||||||| || |
|
|
| T |
25521872 |
taaatgaattgtatgaaagatccaagcgaatgagatgttgaaggtttgaaagtgatgttggcaattctccttcaaatttgttataactaaaatctaatac |
25521773 |
T |
|
| Q |
327 |
tttaaatttgtttga |
341 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
25521772 |
ttgaaatttgtttga |
25521758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 42 - 281
Target Start/End: Original strand, 11119138 - 11119377
Alignment:
| Q |
42 |
tagctgttgaaaacctgtaattttattcggcaatggacctcttaatttattatatgaacaatctaatctaacaagttgagtcatcttaaataaggaaagt |
141 |
Q |
| |
|
||||| ||| || ||||||||||| || |||| ||||| ||||||||||| |||||| ||||| |||||||||||||| |||||||| || | |
|
|
| T |
11119138 |
tagcttttggaaccctgtaattttgttgggcaggggaccatctaatttattattagaacaacctaatgcaacaagttgagtcaagttaaataatgatgat |
11119237 |
T |
|
| Q |
142 |
ggaatttgtcctactaaattgtttgaatatagacggagttcttgcagtttggtcatcccgccaaatacatctggaatttgactgcttaatgaattgtatg |
241 |
Q |
| |
|
|||||||||||| |||| ||||| ||| || ||||||||||||||| |||||||| ||||| |||||||| ||| ||| ||| |||| |||| | | |
|
|
| T |
11119238 |
ggaatttgtccttctaacttgttataatctaagtcgagttcttgcagttttgtcatcccaccaaacacatctggtattggaccgctaaatgcattggaag |
11119337 |
T |
|
| Q |
242 |
aaagatccaagttaatgagatggcgaaggtttgaaagtga |
281 |
Q |
| |
|
||| |||||||| ||| || || |||||||||||||||| |
|
|
| T |
11119338 |
aaatatccaagtgaataagttgttgaaggtttgaaagtga |
11119377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 375
Target Start/End: Original strand, 11119555 - 11119687
Alignment:
| Q |
243 |
aagatccaagttaatgagatggcgaaggtttgaaagtgatgttggtagttcacctccaatcttgttaccactcaaatctattattttaaatttgtttgac |
342 |
Q |
| |
|
||||||||||| |||||| || |||||||||||| ||||||||| | ||||| |||| |||||| ||||||||||| | ||| ||||||||||||| |
|
|
| T |
11119555 |
aagatccaagtgaatgagttgttgaaggtttgaaattgatgttggaaccacaccttcaattttgttatgactcaaatctaatttttgaaatttgtttgac |
11119654 |
T |
|
| Q |
343 |
agatgaaaagaatccggcatttgaccactgagt |
375 |
Q |
| |
|
| ||||| | || || ||| ||||||||||| |
|
|
| T |
11119655 |
atctgaaatgcatttggaattcgaccactgagt |
11119687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 219 - 318
Target Start/End: Original strand, 8524203 - 8524302
Alignment:
| Q |
219 |
ttgactgcttaatgaattgtatgaaagatccaagttaatgagatggcgaaggtttgaaagtgatgttggtagttcacctccaatcttgttaccactcaaa |
318 |
Q |
| |
|
||||| ||| |||||||||||||||| |||||||| ||||||||| ||||||||||| ||||||||||| || |||||| |||| |||||| ||||||| |
|
|
| T |
8524203 |
ttgaccgctaaatgaattgtatgaaacatccaagtaaatgagatgacgaaggtttgatagtgatgttggaagctcaccttcaattttgttattactcaaa |
8524302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 8524074 - 8524190
Alignment:
| Q |
18 |
gttgtcatttaaacgaaaatgaactagctgttgaaaacctgtaattttattcggcaatggacctcttaatttattatatgaacaatctaatctaacaagt |
117 |
Q |
| |
|
|||||||||||| || |||| | ||||| ||||| ||||||| |||| || || || ||||| ||||||||||| ||||||||||| ||||||| |
|
|
| T |
8524074 |
gttgtcatttaatcgcaaattagttagcttttgaagacctgtagttttgttgggtaagggaccatctaatttattatgagaacaatctaaagtaacaaga |
8524173 |
T |
|
| Q |
118 |
tgagtcatcttaaataa |
134 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
8524174 |
tgagtcaagttaaataa |
8524190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 322
Target Start/End: Original strand, 15590744 - 15590791
Alignment:
| Q |
275 |
aaagtgatgttggtagttcacctccaatcttgttaccactcaaatcta |
322 |
Q |
| |
|
||||||||||||| || |||||| |||| ||||||||||||||||||| |
|
|
| T |
15590744 |
aaagtgatgttggcagctcaccttcaattttgttaccactcaaatcta |
15590791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University