View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14483_high_24 (Length: 373)
Name: NF14483_high_24
Description: NF14483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14483_high_24 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 7292524 - 7292152
Alignment:
| Q |
1 |
aagatccatgtgacgtggaatattgttgcgacgattgggattttttggctactgctcttaatgatatggtgttgcaggtatagacatcattttcctatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7292524 |
aagatccatgtgacgtggaatattgttgcgacgattgggattttttggctactgctcttaatgatatggtgttgcaggtatagacatcattttcctatat |
7292425 |
T |
|
| Q |
101 |
gaaaaatgagttatataggaaaattatttgtgtttgtccttaatattgtatgctacaggggattataagggaagatgaagtgaatacttttaacatcccg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7292424 |
gaaaaatgagttatataggaaaattatttgtgtttgtccttaatattgtatgctacaggggattataagggaagatcaagtgaatacttttaacatcccg |
7292325 |
T |
|
| Q |
201 |
cactattatccgtctccgaatgaagtggaattggaagttctcaatgaaggatcgtttgtcatcaatcacattgagttgtttgaaacagaatcaaatactt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7292324 |
cactattatccgtctccgaatgaagtggaattggaagttgtcaatgaaggatcgtttgtcatcaatcacattgagttgtttgaaacagaatcaaatactt |
7292225 |
T |
|
| Q |
301 |
ctaatgatgaaagtgattatgataatgaatatgatgttgcagggtgcattagagctgtggttgaacctatgct |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7292224 |
ctaatgatgaaagtgattatgataatgaatatgatgttgcagggtgcattagagctgtggttgaacctttgct |
7292152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 146 - 284
Target Start/End: Complemental strand, 7297270 - 7297132
Alignment:
| Q |
146 |
ttgtatgctacaggggattataagggaagatgaagtgaatacttttaacatcccgcactattatccgtctccgaatgaagtggaattggaagttctcaat |
245 |
Q |
| |
|
|||||||| |||||||||||||| ||||||| |||||||||||||||| |||| || |||||||| || || ||||||| || || |||||||||||| |
|
|
| T |
7297270 |
ttgtatgcaacaggggattataaaggaagatcaagtgaatacttttaatgtccctcaatattatccatcaccatatgaagttgagttagaagttctcaat |
7297171 |
T |
|
| Q |
246 |
gaaggatcgtttgtcatcaatcacattgagttgtttgaa |
284 |
Q |
| |
|
|||||||| |||| |||||||| | |||||||||||| |
|
|
| T |
7297170 |
gaaggatcatttgccatcaatcgtttggagttgtttgaa |
7297132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 266
Target Start/End: Complemental strand, 27736134 - 27736051
Alignment:
| Q |
183 |
aatacttttaacatcccgcactattatccgtctccgaatgaagtggaattggaagttctcaatgaaggatcgtttgtcatcaat |
266 |
Q |
| |
|
|||||||| |||||||| | |||||||| ||||| ||||||| | ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
27736134 |
aatactttcaacatccctaattattatccatctccatctgaagtgaagttggaagttctcaatgaaggatcatttgtcatcaat |
27736051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 268
Target Start/End: Original strand, 20117929 - 20117995
Alignment:
| Q |
202 |
actattatccgtctccgaatgaagtggaattggaagttctcaatgaaggatcgtttgtcatcaatca |
268 |
Q |
| |
|
|||||||||| ||||| | ||||||| ||||||||||||| | |||||| || ||||||||| |||| |
|
|
| T |
20117929 |
actattatccatctccaactgaagtgaaattggaagttctaactgaagggtcatttgtcatcgatca |
20117995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University