View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14483_high_26 (Length: 364)
Name: NF14483_high_26
Description: NF14483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14483_high_26 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 36140928 - 36140581
Alignment:
| Q |
18 |
atgaacctaattcttacagggcggttttatgaagttttgtcgagttgatttaggttcaatccgaattctaagactctgcttccatttcacttaattgtat |
117 |
Q |
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| T |
36140928 |
atgaaccgaattcttacagggcggttttatgaagttttgtcgagttgatttaggttcaatccgaattctaagactctgcttccatttcacttaattgtat |
36140829 |
T |
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| Q |
118 |
ccatccattagagtagtagtgtttagagactgttctcatttgagtaggcagagtgttatctgatgttatagatgtccaatcttctttacatgagctgctg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36140828 |
ccatccattagagtagtagtgtttagagactgttctcatttgagtaggcagaatgttatctgatgttatagatgtacaatcttctttacatgagctgctg |
36140729 |
T |
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| Q |
218 |
ttttttagtctgcataattaaaggtcataatatgtgtaaattgttttctcatttgttgtgctcttttggttttgcagatgggccagctgaagatctatat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36140728 |
ttttttagtctgcataattaaaggtcataatatgtgtaaattgttttctcatttgttgtgctcttttggttttgcagatgggccagctgaagatctatat |
36140629 |
T |
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| Q |
318 |
ggcatttttatcaatcgagttcgtcgtgagcgtcca-cagaatttttg |
364 |
Q |
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| T |
36140628 |
gggatttttatcaatcgagttcgtcgtgagcgtccaccagaatttttg |
36140581 |
T |
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