View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14483_high_28 (Length: 361)
Name: NF14483_high_28
Description: NF14483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14483_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 19 - 351
Target Start/End: Original strand, 2521187 - 2521518
Alignment:
| Q |
19 |
aaattaatgcaaaggtaatgcatatgttttatgtttaatcttgttttgtgaggttgcttcaataaaaacttgaacaaaaaggatgttcatgaagattaca |
118 |
Q |
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| T |
2521187 |
aaattaatgcaaaggtaatgcatatgttttatgtttaatcttgttttgtggggttgcttcaataaaaacttgaataaaaaggatgttcatgaagattaca |
2521286 |
T |
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| Q |
119 |
cttagataactccaaagtgtgtttatccacactaacctttaagtttggttcgcccctgccaatctatgtatattggatgcaaaagggtatattggcgaat |
218 |
Q |
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| T |
2521287 |
cttagataactccaaagtgtgtttatccacactaacctttaagtttggttcgccc-tgccaatctatgtatattggatgcaaaagggtatattggcgaat |
2521385 |
T |
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| Q |
219 |
acctttcaggattttggcatacataatgtcagcgcctagagccttgtgcgagcacccaacgccctacatagtaattttttcttgtttttctgcagcgtat |
318 |
Q |
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| T |
2521386 |
acccttcaggattttggcatacataatgtcagcgcctagagccttgtgcgagcacccaacgccctacatagtaattttttcttgtttttctgcagcgtat |
2521485 |
T |
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| Q |
319 |
actcatctcgagtcatataatatgtctcctatg |
351 |
Q |
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| T |
2521486 |
actcatctcgagtcatataatatgtctcctatg |
2521518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 200
Target Start/End: Complemental strand, 30283786 - 30283731
Alignment:
| Q |
145 |
ccacactaacctttaagtttggttcgcccctgccaatctatgtatattggatgcaa |
200 |
Q |
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| T |
30283786 |
ccacactaacctttaagttcgattcgcccccaccaataaatgtatattggatgcaa |
30283731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 14615288 - 14615344
Alignment:
| Q |
144 |
tccacactaacctttaagtttggttcgcccctgccaatctatgtatattggatgcaa |
200 |
Q |
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| T |
14615288 |
tccacactaacctttaggttcgattcgcccccaccaataaatgtatattggatgcaa |
14615344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 153
Target Start/End: Complemental strand, 26842220 - 26842155
Alignment:
| Q |
86 |
acttgaacaaaaaggatgttcatgaagattacacttagataactccaaagtgtgtttatccacactaa |
153 |
Q |
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| T |
26842220 |
acttgaacaaagaggttgttgatgaagattacacttag--aactctaaagtatgtgtatccaaactaa |
26842155 |
T |
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