View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14483_high_30 (Length: 341)
Name: NF14483_high_30
Description: NF14483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14483_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 43172746 - 43172927
Alignment:
| Q |
18 |
ggttgtatgattgttgattctactagaaaaggaaagcgtttccctgacagcatgtccaaaaccatacccatatggacttgtgttcttaatcgtgcaattg |
117 |
Q |
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| T |
43172746 |
ggttgtatgattgttgattctactagaaaaggaaagcgtttccctgacagcatgtccaaaaccatacccatatggacttgtgttcttaatcgtgcaattg |
43172845 |
T |
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| Q |
118 |
cccaatttataagagattttcatatggatgatacttcagcaccacaattgagtgtaagaatcactagtcttatgcttcctcc |
199 |
Q |
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| T |
43172846 |
cccaatttataagagattttcatatggatgatacttcagcaccacaattgagtgtaagaatcactagtcttatgcttcctcc |
43172927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 266 - 341
Target Start/End: Original strand, 43172994 - 43173069
Alignment:
| Q |
266 |
gtatatatgaaatgaaagtacactttttgtttatagtctatggtctatgtattaattttgattggttttaattcat |
341 |
Q |
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| T |
43172994 |
gtatatatgaaatgaaagtacactttttgtttatagtctatggtctatgtaacaattttgattggttttaattcat |
43173069 |
T |
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