View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14483_high_32 (Length: 335)

Name: NF14483_high_32
Description: NF14483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14483_high_32
NF14483_high_32
[»] chr3 (6 HSPs)
chr3 (7-328)||(51067471-51067798)
chr3 (231-295)||(25252883-25252947)
chr3 (225-302)||(27040604-27040681)
chr3 (225-302)||(39133781-39133858)
chr3 (225-302)||(39471139-39471216)
chr3 (225-265)||(23206997-23207037)
[»] chr6 (6 HSPs)
chr6 (231-306)||(4442051-4442126)
chr6 (225-302)||(7436703-7436780)
chr6 (235-302)||(33109845-33109912)
chr6 (225-302)||(7957057-7957134)
chr6 (231-315)||(6998585-6998669)
chr6 (226-302)||(18961849-18961925)
[»] chr5 (14 HSPs)
chr5 (228-315)||(26299452-26299539)
chr5 (231-315)||(27451037-27451121)
chr5 (225-301)||(5385150-5385226)
chr5 (225-316)||(1841023-1841114)
chr5 (231-302)||(26217432-26217503)
chr5 (225-315)||(34720110-34720200)
chr5 (225-302)||(3805433-3805510)
chr5 (225-316)||(19283630-19283721)
chr5 (225-315)||(34724086-34724176)
chr5 (231-301)||(34856955-34857025)
chr5 (225-302)||(11136723-11136800)
chr5 (225-302)||(26297908-26297985)
chr5 (225-265)||(10493382-10493422)
chr5 (225-301)||(32157446-32157522)
[»] chr7 (10 HSPs)
chr7 (231-302)||(17026058-17026129)
chr7 (225-302)||(36926412-36926489)
chr7 (225-296)||(388430-388501)
chr7 (225-260)||(10618029-10618064)
chr7 (226-265)||(42012275-42012314)
chr7 (225-296)||(45174640-45174711)
chr7 (225-302)||(5776625-5776702)
chr7 (231-296)||(5795560-5795625)
chr7 (225-302)||(42071523-42071600)
chr7 (226-302)||(26215721-26215797)
[»] chr1 (14 HSPs)
chr1 (231-302)||(24575309-24575380)
chr1 (225-295)||(38061686-38061756)
chr1 (225-302)||(5205170-5205247)
chr1 (225-302)||(15257906-15257978)
chr1 (225-302)||(28005738-28005815)
chr1 (225-302)||(29678164-29678241)
chr1 (225-302)||(32179336-32179413)
chr1 (225-285)||(42936498-42936558)
chr1 (224-302)||(36418522-36418600)
chr1 (228-265)||(35634963-35635000)
chr1 (228-285)||(48575813-48575870)
chr1 (225-265)||(23915886-23915926)
chr1 (225-285)||(35810113-35810173)
chr1 (225-265)||(43090124-43090164)
[»] chr8 (3 HSPs)
chr8 (225-315)||(9413311-9413401)
chr8 (225-265)||(27189650-27189690)
chr8 (225-306)||(32740282-32740363)
[»] chr4 (13 HSPs)
chr4 (225-302)||(52705596-52705673)
chr4 (224-302)||(22720746-22720824)
chr4 (225-302)||(7505427-7505504)
chr4 (224-296)||(9222841-9222913)
chr4 (225-296)||(12790212-12790283)
chr4 (225-296)||(25133936-25134007)
chr4 (231-302)||(50605464-50605535)
chr4 (228-302)||(12673728-12673802)
chr4 (225-302)||(9469431-9469507)
chr4 (231-296)||(40797163-40797228)
chr4 (241-302)||(51409174-51409235)
chr4 (225-265)||(28266836-28266876)
chr4 (231-315)||(49820387-49820471)
[»] scaffold0135 (1 HSPs)
scaffold0135 (224-296)||(33494-33566)
[»] chr2 (8 HSPs)
chr2 (231-315)||(20986073-20986157)
chr2 (231-287)||(34116829-34116885)
chr2 (225-260)||(11027290-11027325)
chr2 (225-260)||(18053397-18053432)
chr2 (224-302)||(26435769-26435847)
chr2 (225-302)||(2647660-2647737)
chr2 (231-296)||(33830899-33830964)
chr2 (225-302)||(36538080-36538157)
[»] scaffold0658 (1 HSPs)
scaffold0658 (225-292)||(6463-6530)
[»] scaffold0043 (1 HSPs)
scaffold0043 (225-265)||(16495-16535)


Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 7 - 328
Target Start/End: Original strand, 51067471 - 51067798
Alignment:
Q  7 ccatgttcgctaaaaaagagtacattacattatactcagttcccctggctttaaatttatgtctccacccctgccactggttatcatataccgagtttgt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51067471 ccatgttcgctaaaaaagagtacattacattatactcagttcccctggctttaaatttatgtctccacccctgccactggttatcatataccgagtttgt 51067570  T
Q  107 ttgtttaatattgatctcccaaaaatttcaaaagatcaaagaagaacctttactgtagt-----nnnnnnnncagtgaatttataaaaagggtgagttca 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||             ||||||||||||||||||||||||||||    
T  51067571 ttgtttaatattgatctcccaaaaatttcaaaagatcaaagaagaacctttactttagtaaaaaaaaaaaaacagtgaatttataaaaagggtgagttca 51067670  T
Q  202 tattagatgtataatgtatact-aggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaac 300  Q
    ||||||||| || ||||||||| |||| |||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||| |||    
T  51067671 tattagatgcatcatgtatactaaggcggaaaatgagtcgagtcaaatcgaacttgtctaagctcaattctaatcgataagaattagttcggctcgaaac 51067770  T
Q  301 tcaacttgacttcgatgcaaatcatttt 328  Q
    |||||| ||||||||| |||||||||||    
T  51067771 tcaactcgacttcgatacaaatcatttt 51067798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 25252883 - 25252947
Alignment:
Q  231 aaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctc 295  Q
    |||||||||||||||| |||||| |||||| |||||| || | |||||||||||| |||||||||    
T  25252883 aaatgagtcgagtcgagtcgaacctgtctgagctcaactcgactcgataagaattggttcggctc 25252947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 302
Target Start/End: Complemental strand, 27040681 - 27040604
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactc 302  Q
    ||||| |||||||||||||||| |||||||||| || |||||| || | ||| ||||| || |||||||||| |||||    
T  27040681 ggctggaaatgagtcgagtcgagtcgaacttgtttgagctcaactcgactcgttaagatttggttcggctcgaaactc 27040604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 302
Target Start/End: Original strand, 39133781 - 39133858
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactc 302  Q
    |||||||||||| ||||||||||  |||| |||||| |||||  || | |||||||||||| |||||||||| |||||    
T  39133781 ggctgaaaatgattcgagtcgaactgaacctgtctgagctcagctcgactcgataagaattggttcggctcgaaactc 39133858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 302
Target Start/End: Complemental strand, 39471216 - 39471139
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactc 302  Q
    ||||| ||||||||||||||||| ||||| ||||||  |||   || | |||||||||||| |||||||||| |||||    
T  39471216 ggctggaaatgagtcgagtcgaaccgaacctgtctgaactcggctcgactcgataagaattggttcggctcgaaactc 39471139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 265
Target Start/End: Complemental strand, 23207037 - 23206997
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctc 265  Q
    ||||||||||||||||||||||| ||||| |||||| ||||    
T  23207037 ggctgaaaatgagtcgagtcgaaccgaacctgtctgagctc 23206997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 231 - 306
Target Start/End: Complemental strand, 4442126 - 4442051
Alignment:
Q  231 aaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactcaact 306  Q
    ||||||||||||||||| ||||| |||||| |||||| || | ||||||||||||| ||||||||| |||||||||    
T  4442126 aaatgagtcgagtcgaaccgaacctgtctgagctcaactcgactcgataagaattaattcggctcgaaactcaact 4442051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 302
Target Start/End: Original strand, 7436703 - 7436780
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactc 302  Q
    |||||||||| |||||||||||||||||| |||||| |||| | || | |||||||||| | |||||||||| |||||    
T  7436703 ggctgaaaataagtcgagtcgaatcgaacctgtctgagctcgactcgactcgataagaaatggttcggctcgaaactc 7436780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 302
Target Start/End: Original strand, 33109845 - 33109912
Alignment:
Q  235 gagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactc 302  Q
    |||||||||||| ||||||||||||| ||||   || | |||||||||||| |||||||||| |||||    
T  33109845 gagtcgagtcgagtcgaacttgtctgagctcggctcgactcgataagaattggttcggctcgaaactc 33109912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 302
Target Start/End: Original strand, 7957057 - 7957134
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactc 302  Q
    ||||| ||||||||||||||||  ||||| |||||| ||||   || | |||||||||||| |||||||||| |||||    
T  7957057 ggctggaaatgagtcgagtcgacccgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactc 7957134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 315
Target Start/End: Original strand, 6998585 - 6998669
Alignment:
Q  231 aaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactcaacttgacttcga 315  Q
    ||||||||||||||||| ||||| |||||| ||||   || | |||||||||||| | |||||||| ||||| ||| || |||||    
T  6998585 aaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataagaatttgctcggctcgaaactcgactcgagttcga 6998669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 302
Target Start/End: Original strand, 18961849 - 18961925
Alignment:
Q  226 gctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactc 302  Q
    |||| |||||||||||||| |||||||| || ||| ||||   || | |||||||||||| |||||||||| |||||    
T  18961849 gctggaaatgagtcgagtcaaatcgaacctgcctgagctcggctcgactcgataagaattggttcggctcgaaactc 18961925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 228 - 315
Target Start/End: Original strand, 26299452 - 26299539
Alignment:
Q  228 tgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactcaacttgacttcga 315  Q
    ||||||||||||||||||| || |||||||||| |||| |||| | |||||||||||| |||||||||| ||||| ||| || |||||    
T  26299452 tgaaaatgagtcgagtcgagtcaaacttgtctgagctcgattcgactcgataagaattggttcggctcgaaactcgactcgagttcga 26299539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 231 - 315
Target Start/End: Complemental strand, 27451121 - 27451037
Alignment:
Q  231 aaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactcaacttgacttcga 315  Q
    |||||||||||||||| || ||| |||||| |||| |||| | |||||||||||| |||||||||| ||||||||| || |||||    
T  27451121 aaatgagtcgagtcgagtcaaacctgtctgagctcgattcgactcgataagaattggttcggctcgaaactcaactcgagttcga 27451037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 225 - 301
Target Start/End: Complemental strand, 5385226 - 5385150
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaact 301  Q
    ||||| ||||||||||||||||||||||||| |||| |||| |||| | ||||| | |||| |||||||||| ||||    
T  5385226 ggctggaaatgagtcgagtcgaatcgaacttttctgagctcgattcgattcgattaaaatttgttcggctcgaaact 5385150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 316
Target Start/End: Complemental strand, 1841114 - 1841023
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactcaacttgacttcgat 316  Q
    ||||| ||||||||||||||||| | ||| |||||| |||| | || | |||||||||||| |||||||||| ||||| ||| || ||||||    
T  1841114 ggctggaaatgagtcgagtcgaaccaaacctgtctgagctcgactcgactcgataagaattggttcggctcgaaactcgactcgagttcgat 1841023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 302
Target Start/End: Original strand, 26217432 - 26217503
Alignment:
Q  231 aaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactc 302  Q
    |||||||||||||||| ||||||||||||| ||||  ||| | || ||||||||| |||||||||| |||||    
T  26217432 aaatgagtcgagtcgagtcgaacttgtctgagctcggttcgactcaataagaattggttcggctcgaaactc 26217503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 315
Target Start/End: Complemental strand, 34720200 - 34720110
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactcaacttgacttcga 315  Q
    ||||| |||||||||||||||| |||||| |||| | |||| |||| | |||||||||||| |||||| ||| ||||| ||| || |||||    
T  34720200 ggctggaaatgagtcgagtcgagtcgaacctgtccgagctcgattcgactcgataagaattggttcggttcgaaactcgactcgagttcga 34720110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 302
Target Start/End: Complemental strand, 3805510 - 3805433
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactc 302  Q
    ||||| ||||||||||||||||| ||||| |||||| ||||   || | |||||||||||| |||||||||| |||||    
T  3805510 ggctggaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactc 3805433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 316
Target Start/End: Complemental strand, 19283721 - 19283630
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactcaacttgacttcgat 316  Q
    ||||| ||||||||||||| ||||||||||| |||| |||| | || | |||||||||||| |||  ||||| ||||| ||| || ||||||    
T  19283721 ggctggaaatgagtcgagtagaatcgaacttatctgagctcgactcgactcgataagaattggtttagctcgaaactcgactcgagttcgat 19283630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 315
Target Start/End: Complemental strand, 34724176 - 34724086
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactcaacttgacttcga 315  Q
    ||||| |||||||||||||||| |||||| |||| | |||| |||| | |||||||||||| |||| | ||| ||||| ||| || |||||    
T  34724176 ggctggaaatgagtcgagtcgagtcgaacctgtccgagctcgattcgactcgataagaattggttcagttcgaaactcgactcgagttcga 34724086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 301
Target Start/End: Original strand, 34856955 - 34857025
Alignment:
Q  231 aaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaact 301  Q
    |||||||||||||||| |||||  |||||| | || |||| | |||||||||||| |||||||||| ||||    
T  34856955 aaatgagtcgagtcgagtcgaatctgtctgagttcgattcgactcgataagaattggttcggctcgaaact 34857025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 302
Target Start/End: Complemental strand, 11136800 - 11136723
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactc 302  Q
    ||||| |||||||||||||||| |||||||||||||  |||   || | |||||||||||  |||||||||| |||||    
T  11136800 ggctggaaatgagtcgagtcgagtcgaacttgtctgaactcggctcgattcgataagaataggttcggctcgaaactc 11136723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 302
Target Start/End: Original strand, 26297908 - 26297985
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactc 302  Q
    ||||||||||||||||| || | || ||| ||| || |||| |||| | |||||||||||| |||||||||| |||||    
T  26297908 ggctgaaaatgagtcgaatcaagtcaaacctgtgtgagctcgattcgactcgataagaattggttcggctcgaaactc 26297985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 265
Target Start/End: Original strand, 10493382 - 10493422
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctc 265  Q
    ||||| ||||||||||||||||||||||| |||||| ||||    
T  10493382 ggctggaaatgagtcgagtcgaatcgaacctgtctgagctc 10493422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 301
Target Start/End: Complemental strand, 32157522 - 32157446
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaact 301  Q
    ||||| |||||||||||||||||  |||| |||||| ||||   || | |||||||||||| |||||||||| ||||    
T  32157522 ggctggaaatgagtcgagtcgaactgaacctgtctgggctcggctcgactcgataagaattggttcggctcgaaact 32157446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 302
Target Start/End: Complemental strand, 17026129 - 17026058
Alignment:
Q  231 aaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactc 302  Q
    |||||||||||||||| ||||||||||||| |||| | || | |||||||||||| |||||||||| |||||    
T  17026129 aaatgagtcgagtcgagtcgaacttgtctgagctcgactcgactcgataagaattggttcggctcgaaactc 17026058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 302
Target Start/End: Original strand, 36926412 - 36926489
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactc 302  Q
    ||||| ||||||||||||||||||||||| |||||| ||||   || | |||||||||||| |||||||||| |||||    
T  36926412 ggctggaaatgagtcgagtcgaatcgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactc 36926489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 388430 - 388501
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcg 296  Q
    ||||| ||||||||||||||||| |||||||| ||| ||||  ||| | |||||||||||| ||||||||||    
T  388430 ggctggaaatgagtcgagtcgaaccgaacttgcctgagctcggttcgactcgataagaattggttcggctcg 388501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 260
Target Start/End: Original strand, 10618029 - 10618064
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctg 260  Q
    ||||||||||||||||||||||||||||| ||||||    
T  10618029 ggctgaaaatgagtcgagtcgaatcgaacctgtctg 10618064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 265
Target Start/End: Complemental strand, 42012314 - 42012275
Alignment:
Q  226 gctgaaaatgagtcgagtcgaatcgaacttgtctgtgctc 265  Q
    |||| |||||||||||||||||||||||||||||| ||||    
T  42012314 gctggaaatgagtcgagtcgaatcgaacttgtctgagctc 42012275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 45174640 - 45174711
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcg 296  Q
    ||||||||||||||||||||||| ||||| |||||| ||||   || | || ||||||||| ||||||||||    
T  45174640 ggctgaaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcaataagaattggttcggctcg 45174711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 302
Target Start/End: Complemental strand, 5776702 - 5776625
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactc 302  Q
    ||||| ||||||||||||||||| ||||| || ||| ||||   || | ||||||||||||||||| ||||| |||||    
T  5776702 ggctggaaatgagtcgagtcgaaccgaacctgcctgagctcggctcgactcgataagaattagttcagctcgaaactc 5776625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 296
Target Start/End: Complemental strand, 5795625 - 5795560
Alignment:
Q  231 aaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcg 296  Q
    ||||||||||||||||||||||| || ||| ||||   || | |||||||||||| ||||||||||    
T  5795625 aaatgagtcgagtcgaatcgaacctgcctgagctcggctcgactcgataagaattggttcggctcg 5795560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 302
Target Start/End: Original strand, 42071523 - 42071600
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactc 302  Q
    ||||||||||||||||||||||| | ||| |||||| ||||   || | || ||||||||| |||||||||| |||||    
T  42071523 ggctgaaaatgagtcgagtcgaaccaaacatgtctgagctcggctcgactcaataagaattggttcggctcgaaactc 42071600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 302
Target Start/End: Original strand, 26215721 - 26215797
Alignment:
Q  226 gctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactc 302  Q
    |||| ||||||||||||||||| ||||| || ||| ||||   || | |||||||||||| |||||||||| |||||    
T  26215721 gctggaaatgagtcgagtcgaaccgaacctgcctgagctcggctcgactcgataagaattggttcggctcgaaactc 26215797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 302
Target Start/End: Original strand, 24575309 - 24575380
Alignment:
Q  231 aaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactc 302  Q
    |||||||||||||||| |||||| |||||| |||| |||  |||||||||||||| |||||||||| |||||    
T  24575309 aaatgagtcgagtcgagtcgaacctgtctgagctcgatttgaatcgataagaattggttcggctcgaaactc 24575380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 38061756 - 38061686
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctc 295  Q
    ||||| |||||||||||||||| |||||| |||||| |||| |||| | |||||||||||| |||||||||    
T  38061756 ggctggaaatgagtcgagtcgagtcgaacctgtctgagctcgattcgactcgataagaattggttcggctc 38061686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 302
Target Start/End: Complemental strand, 5205247 - 5205170
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactc 302  Q
    ||||| |||||||||||||||| |||||| |||||| |||| |||| | || ||||||||| |||||||||| |||||    
T  5205247 ggctggaaatgagtcgagtcgagtcgaacctgtctgagctcgattcgactccataagaattggttcggctcgaaactc 5205170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 302
Target Start/End: Complemental strand, 15257978 - 15257906
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactc 302  Q
    |||||||||||||||||||||||||     |||||| |||||| || | |||||||||||| |||||||||| |||||    
T  15257978 ggctgaaaatgagtcgagtcgaatc-----tgtctgagctcaactcgactcgataagaattggttcggctcgaaactc 15257906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 302
Target Start/End: Original strand, 28005738 - 28005815
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactc 302  Q
    ||||| |||||||||||||||| |||||| | |||| |||| | || | |||||||||||| |||||||||| |||||    
T  28005738 ggctggaaatgagtcgagtcgagtcgaacctctctgagctcgactcgactcgataagaattggttcggctcgaaactc 28005815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 302
Target Start/End: Complemental strand, 29678241 - 29678164
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactc 302  Q
    ||||| ||||||||||||||||||||||| |||||| |||  | || | |||||||||| | |||||||||| |||||    
T  29678241 ggctggaaatgagtcgagtcgaatcgaacctgtctgagcttgactcgactcgataagaaatggttcggctcgaaactc 29678164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 302
Target Start/End: Original strand, 32179336 - 32179413
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactc 302  Q
    ||||| ||||||||||||||||| |||||||| ||| ||||   || | |||||||||||| |||||||||| |||||    
T  32179336 ggctggaaatgagtcgagtcgaaccgaacttgcctgagctcggctcgattcgataagaattggttcggctcgaaactc 32179413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 285
Target Start/End: Original strand, 42936498 - 42936558
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaatt 285  Q
    ||||| |||||||||||||||||||||||||||||| | |||| || | ||| ||||||||    
T  42936498 ggctggaaatgagtcgagtcgaatcgaacttgtctgagttcaactcgactcgttaagaatt 42936558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 302
Target Start/End: Original strand, 36418522 - 36418600
Alignment:
Q  224 aggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactc 302  Q
    |||||| ||||||||||||||||||||||  || ||| ||||   || | |||||||||||| |||||||||| |||||    
T  36418522 aggctggaaatgagtcgagtcgaatcgaatctgcctgagctcggctcgactcgataagaattggttcggctcgaaactc 36418600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 265
Target Start/End: Original strand, 35634963 - 35635000
Alignment:
Q  228 tgaaaatgagtcgagtcgaatcgaacttgtctgtgctc 265  Q
    ||||||||||||||||||| ||||||||||||| ||||    
T  35634963 tgaaaatgagtcgagtcgagtcgaacttgtctgagctc 35635000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 285
Target Start/End: Complemental strand, 48575870 - 48575813
Alignment:
Q  228 tgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaatt 285  Q
    |||||||||||||| ||||||||||| |||||| |||| | || | ||||||||||||    
T  48575870 tgaaaatgagtcgaatcgaatcgaacatgtctgagctcgactcgactcgataagaatt 48575813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 265
Target Start/End: Complemental strand, 23915926 - 23915886
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctc 265  Q
    ||||| ||||||||||||| |||||||||||||||| ||||    
T  23915926 ggctggaaatgagtcgagtagaatcgaacttgtctgagctc 23915886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 285
Target Start/End: Original strand, 35810113 - 35810173
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaatt 285  Q
    ||||| ||||||||||||||||||||||| | |||| |||||| || | ||| ||||||||    
T  35810113 ggctggaaatgagtcgagtcgaatcgaacctatctgagctcaactcgactcgttaagaatt 35810173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 265
Target Start/End: Complemental strand, 43090164 - 43090124
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctc 265  Q
    ||||| |||||||||||||||| ||||||||||||| ||||    
T  43090164 ggctggaaatgagtcgagtcgagtcgaacttgtctgagctc 43090124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 315
Target Start/End: Complemental strand, 9413401 - 9413311
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactcaacttgacttcga 315  Q
    ||||| |||||||||||||||||  ||||||||||| |||| | || | |||||||||| | |||||||||| ||||| |||||| |||||    
T  9413401 ggctggaaatgagtcgagtcgaactgaacttgtctgagctcgactcgactcgataagaaatggttcggctcgaaactcgacttgagttcga 9413311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 265
Target Start/End: Complemental strand, 27189690 - 27189650
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctc 265  Q
    ||||| |||||||||||||||||||||||||||||| ||||    
T  27189690 ggctggaaatgagtcgagtcgaatcgaacttgtctgagctc 27189650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 306
Target Start/End: Original strand, 32740282 - 32740363
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactcaact 306  Q
    ||||||||||||||||| |||| ||||| || |||| | || |||| | || |||||||||||||| ||||| || ||||||    
T  32740282 ggctgaaaatgagtcgaatcgagtcgaatttatctgagttcgattcgactcaataagaattagttcagctcgaaattcaact 32740363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 302
Target Start/End: Original strand, 52705596 - 52705673
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactc 302  Q
    ||||| |||||||||||||||| ||||||||||||| ||||   || | |||||||||||| |||||||||| |||||    
T  52705596 ggctggaaatgagtcgagtcgagtcgaacttgtctgagctcggctcgactcgataagaattggttcggctcgaaactc 52705673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 302
Target Start/End: Original strand, 22720746 - 22720824
Alignment:
Q  224 aggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactc 302  Q
    |||||| |||||| ||||||||||||||||| ||||| ||||   || | |||||||||||| |||||||||| |||||    
T  22720746 aggctggaaatgaatcgagtcgaatcgaactagtctgagctcggctcaactcgataagaattggttcggctcgaaactc 22720824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 302
Target Start/End: Original strand, 7505427 - 7505504
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactc 302  Q
    ||||| |||||||||||||||| ||||||||||||| ||||   || | ||||||||||||  ||||||||| |||||    
T  7505427 ggctggaaatgagtcgagtcgagtcgaacttgtctgagctcggctcgactcgataagaattgattcggctcgaaactc 7505504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 296
Target Start/End: Complemental strand, 9222913 - 9222841
Alignment:
Q  224 aggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcg 296  Q
    ||||||||||||||||||||| |||||||  |||||| |||| | || | || ||||||||| ||||||||||    
T  9222913 aggctgaaaatgagtcgagtcaaatcgaaactgtctgagctcgactcaactcaataagaattggttcggctcg 9222841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 12790283 - 12790212
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcg 296  Q
    ||||||||||||||||||||||| ||||| |||||| ||||   || | |||||||||||| | ||||||||    
T  12790283 ggctgaaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgattcgataagaattggctcggctcg 12790212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 25133936 - 25134007
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcg 296  Q
    ||||| |||||||||||||||| |||||  |||||| |||| | || | |||||||||||| ||||||||||    
T  25133936 ggctggaaatgagtcgagtcgagtcgaatctgtctgagctcgactcgactcgataagaattggttcggctcg 25134007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 302
Target Start/End: Original strand, 50605464 - 50605535
Alignment:
Q  231 aaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactc 302  Q
    ||||||||||||||||| ||||| |||||| ||||   || | |||||||||||| |||||||||| |||||    
T  50605464 aaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactc 50605535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 302
Target Start/End: Complemental strand, 12673802 - 12673728
Alignment:
Q  228 tgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactc 302  Q
    ||||||||||||||||||| |||||| |||||| |||| | || | ||  |||||| |||||||||||| |||||    
T  12673802 tgaaaatgagtcgagtcgagtcgaacctgtctgagctcgactcaactctttaagaaatagttcggctcgaaactc 12673728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 302
Target Start/End: Original strand, 9469431 - 9469507
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactc 302  Q
    ||||| |||||||||||||||| |||||| |||||| ||||   || | |||||||||||| |||||||||| |||||    
T  9469431 ggctggaaatgagtcgagtcga-tcgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactc 9469507  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 40797163 - 40797228
Alignment:
Q  231 aaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcg 296  Q
    |||||||||||||||| |||||  |||||| |||| | || | |||||||||||| ||||||||||    
T  40797163 aaatgagtcgagtcgagtcgaatctgtctgagctcgactcgactcgataagaattggttcggctcg 40797228  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 302
Target Start/End: Complemental strand, 51409235 - 51409174
Alignment:
Q  241 agtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactc 302  Q
    |||||| ||||||||||||| |||| | || | |||||||||||| |||||||||| |||||    
T  51409235 agtcgagtcgaacttgtctgagctcgactcgactcgataagaatttgttcggctcgaaactc 51409174  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 265
Target Start/End: Complemental strand, 28266876 - 28266836
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctc 265  Q
    |||||||||||||||||||||||| |||| |||||| ||||    
T  28266876 ggctgaaaatgagtcgagtcgaattgaacatgtctgagctc 28266836  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 315
Target Start/End: Original strand, 49820387 - 49820471
Alignment:
Q  231 aaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactcaacttgacttcga 315  Q
    |||||| |||||||||||||||| || ||| ||||   || | |||||||||||| |||||||||| ||||| ||| || |||||    
T  49820387 aaatgaatcgagtcgaatcgaacctgcctgagctcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcga 49820471  T

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Target: scaffold0135 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 296
Target Start/End: Complemental strand, 33566 - 33494
Alignment:
Q  224 aggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcg 296  Q
    ||||||||||||||||||||| |||||||  |||||| |||| | || | || ||||||||| ||||||||||    
T  33566 aggctgaaaatgagtcgagtcaaatcgaaactgtctgagctcgactcaactcaataagaattggttcggctcg 33494  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 315
Target Start/End: Original strand, 20986073 - 20986157
Alignment:
Q  231 aaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactcaacttgacttcga 315  Q
    ||||||||||||||||| ||||| |||||| ||||   || | |||||||||||| |||||||||| |||||  ||||| |||||    
T  20986073 aaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactcggcttgagttcga 20986157  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 287
Target Start/End: Complemental strand, 34116885 - 34116829
Alignment:
Q  231 aaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattag 287  Q
    ||||||||||||||||||||||| |||||| |||||| || | ||| ||||||||||    
T  34116885 aaatgagtcgagtcgaatcgaacctgtctgagctcaactcaactcgttaagaattag 34116829  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 260
Target Start/End: Original strand, 11027290 - 11027325
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctg 260  Q
    ||||| ||||||||||||||||||||||||||||||    
T  11027290 ggctggaaatgagtcgagtcgaatcgaacttgtctg 11027325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 260
Target Start/End: Original strand, 18053397 - 18053432
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctg 260  Q
    ||||| ||||||||||||||||||||||||||||||    
T  18053397 ggctggaaatgagtcgagtcgaatcgaacttgtctg 18053432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 302
Target Start/End: Original strand, 26435769 - 26435847
Alignment:
Q  224 aggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactc 302  Q
    |||||||||||||||||||||||| ||||  |||||| ||||   || | |||||||||||| |||||| ||| |||||    
T  26435769 aggctgaaaatgagtcgagtcgaaccgaatctgtctgagctcggctcgattcgataagaattggttcggttcgaaactc 26435847  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 302
Target Start/End: Complemental strand, 2647737 - 2647660
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactc 302  Q
    ||||| |||||||||||||||| ||||| |||||||  |||   || | |||||||||||| |||||||||| |||||    
T  2647737 ggctggaaatgagtcgagtcgagtcgaatttgtctgaactcggctcgactcgataagaattggttcggctcgaaactc 2647660  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 33830899 - 33830964
Alignment:
Q  231 aaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcg 296  Q
    ||||||||||||||||| ||||| |||||| ||||   || | |||||||||||| ||||||||||    
T  33830899 aaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataagaattggttcggctcg 33830964  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 302
Target Start/End: Original strand, 36538080 - 36538157
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcggctcgcaactc 302  Q
    ||||| |||||||||||||||||  |||| |||||| ||||   || | |||||||||||| |||||||||| |||||    
T  36538080 ggctggaaatgagtcgagtcgaactgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactc 36538157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0658 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 292
Target Start/End: Complemental strand, 6530 - 6463
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctcaattctaatcgataagaattagttcgg 292  Q
    |||||||||||||||||||||||| |||| || ||| |||| | || | |||||||||||| ||||||    
T  6530 ggctgaaaatgagtcgagtcgaattgaacctgcctgagctcgactcgactcgataagaattggttcgg 6463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 265
Target Start/End: Original strand, 16495 - 16535
Alignment:
Q  225 ggctgaaaatgagtcgagtcgaatcgaacttgtctgtgctc 265  Q
    ||||| ||||||||||||||||||||||| |||||| ||||    
T  16495 ggctggaaatgagtcgagtcgaatcgaacctgtctgagctc 16535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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