View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14483_high_34 (Length: 332)

Name: NF14483_high_34
Description: NF14483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14483_high_34
NF14483_high_34
[»] chr2 (4 HSPs)
chr2 (12-332)||(16231879-16232199)
chr2 (13-332)||(34690539-34690858)
chr2 (13-332)||(34712951-34713270)
chr2 (236-332)||(33860757-33860853)
[»] chr1 (10 HSPs)
chr1 (131-332)||(38138128-38138329)
chr1 (87-332)||(43044767-43045012)
chr1 (87-332)||(43066979-43067224)
chr1 (87-332)||(43083611-43083856)
chr1 (94-331)||(45983965-45984202)
chr1 (87-332)||(3300501-3300746)
chr1 (130-328)||(50912189-50912387)
chr1 (87-332)||(43076834-43077071)
chr1 (94-310)||(7891242-7891458)
chr1 (230-308)||(40034985-40035063)
[»] chr4 (1 HSPs)
chr4 (127-332)||(4231272-4231477)
[»] chr8 (3 HSPs)
chr8 (130-332)||(4619499-4619701)
chr8 (94-310)||(1846263-1846479)
chr8 (237-332)||(4787678-4787773)
[»] chr5 (1 HSPs)
chr5 (156-332)||(16348983-16349159)
[»] chr7 (1 HSPs)
chr7 (268-332)||(39242537-39242601)
[»] chr6 (2 HSPs)
chr6 (130-181)||(7520141-7520192)
chr6 (130-181)||(7529678-7529729)


Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 12 - 332
Target Start/End: Original strand, 16231879 - 16232199
Alignment:
Q  12 aacaatatcaccaggaagggcctcactaatgttttcctgaaacttctgaatagacttgaccccagattgcagcttagtaggagcaaaagtcagtaccatt 111  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  16231879 aacaatatcagcaggaagggcctcattaatgttttcctgaaacttctgaatagacttgaccccagattgtagcttagtaggggcaaaagtcagtaccatt 16231978  T
Q  112 ccgggctttaataccccagtctcaacacgtcccacaggtacagttccaatacctccaatcttgtagacatgctgaaggggcagttgcagaggcttgcctt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  16231979 ccgggctttaataccccagtctcaacacgtcccacaggtacagttccaatacctccaatcttgtagacatgctgaaggggaagtcgcagaggcttgcctt 16232078  T
Q  212 caggcctcttaggttcactgatttggtcaatagcttcaagaagggtaggcccatcataccagtcaaggttagtagagcgctcaacgatgttatctccctt 311  Q
    | ||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  16232079 cgggcctcttaggctcgctgatttggtcaatagcttcaacaagggtaggcccatcataccagtcaaggttagtagagcgctcaacgatgttatctcactt 16232178  T
Q  312 aaagccagagatgggaacaaa 332  Q
    ||| |||||||||||||||||    
T  16232179 aaaaccagagatgggaacaaa 16232199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 13 - 332
Target Start/End: Original strand, 34690539 - 34690858
Alignment:
Q  13 acaatatcaccaggaagggcctcactaatgttttcctgaaacttctgaatagacttgaccccagattgcagcttagtaggagcaaaagtcagtaccattc 112  Q
    |||||||||||||||||||||||||| |||||||| |||  | |||| | |||||| || ||||||||||||  ||| || ||||||||||| |||||||    
T  34690539 acaatatcaccaggaagggcctcactgatgttttcatgatgcatctgcacagacttaactccagattgcagcccagttggggcaaaagtcagcaccattc 34690638  T
Q  113 cgggctttaataccccagtctcaacacgtcccacaggtacagttccaatacctccaatcttgtagacatgctgaaggggcagttgcagaggcttgccttc 212  Q
    | || || || || ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||| || |||  || ||||||||||      
T  34690639 caggtttcaacacaccagtctcaacacgtccgacaggtacagttccaacacctccaatcttgtagacatgttgaagtggtagtctcaaaggcttgcctga 34690738  T
Q  213 aggcctcttaggttcactgatttggtcaatagcttcaagaagggtaggcccatcataccagtcaaggttagtagagcgctcaacgatgttatctccctta 312  Q
    |||||||||||| ||   ||||||||||| |||||||||||||||||| || || ||||||||||||||||| |||||||||| ||||||||||||||||    
T  34690739 aggcctcttaggctcgtcgatttggtcaagagcttcaagaagggtaggaccttcgtaccagtcaaggttagtcgagcgctcaatgatgttatctccctta 34690838  T
Q  313 aagccagagatgggaacaaa 332  Q
     | |||||||||||||||||    
T  34690839 taaccagagatgggaacaaa 34690858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 13 - 332
Target Start/End: Original strand, 34712951 - 34713270
Alignment:
Q  13 acaatatcaccaggaagggcctcactaatgttttcctgaaacttctgaatagacttgaccccagattgcagcttagtaggagcaaaagtcagtaccattc 112  Q
    |||||||||||||||||||||||||| |||||||| |||  | |||| | |||||| || ||||||||||||  ||| || ||||||||||| |||||||    
T  34712951 acaatatcaccaggaagggcctcactgatgttttcatgatgcatctgcacagacttaactccagattgcagcccagttggggcaaaagtcagcaccattc 34713050  T
Q  113 cgggctttaataccccagtctcaacacgtcccacaggtacagttccaatacctccaatcttgtagacatgctgaaggggcagttgcagaggcttgccttc 212  Q
    | || || || || ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||| || |||  || ||||||||||      
T  34713051 caggtttcaacacaccagtctcaacacgtccgacaggtacagttccaacacctccaatcttgtagacatgttgaagtggtagtctcaaaggcttgcctga 34713150  T
Q  213 aggcctcttaggttcactgatttggtcaatagcttcaagaagggtaggcccatcataccagtcaaggttagtagagcgctcaacgatgttatctccctta 312  Q
    |||||||||||| ||   ||||||||||| |||||||||||||||||| || || ||||||||||||||||| |||||||||| ||||||||||||||||    
T  34713151 aggcctcttaggctcgtcgatttggtcaagagcttcaagaagggtaggaccttcgtaccagtcaaggttagtcgagcgctcaatgatgttatctccctta 34713250  T
Q  313 aagccagagatgggaacaaa 332  Q
     | |||||||||||||||||    
T  34713251 taaccagagatgggaacaaa 34713270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 236 - 332
Target Start/End: Original strand, 33860757 - 33860853
Alignment:
Q  236 ggtcaatagcttcaagaagggtaggcccatcataccagtcaaggttagtagagcgctcaacgatgttatctcccttaaagccagagatgggaacaaa 332  Q
    |||||| ||||||||||||||| || || |  ||||||||||| ||||||||||||||||  | ||||||||||| ||| |||||||||||||||||    
T  33860757 ggtcaagagcttcaagaagggtgggacccttgtaccagtcaagattagtagagcgctcaatcaagttatctccctcaaaaccagagatgggaacaaa 33860853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 131 - 332
Target Start/End: Complemental strand, 38138329 - 38138128
Alignment:
Q  131 tctcaacacgtcccacaggtacagttccaatacctccaatcttgtagacatgctgaaggggcagttgcagaggcttgccttcaggcctcttaggttcact 230  Q
    ||||||| ||||||||||| ||||||||||| ||||||||||||||||||| |||||| || | | | ||||||||| ||    |||||||||| ||  |    
T  38138329 tctcaacccgtcccacaggcacagttccaattcctccaatcttgtagacatcctgaagtggtaatcggagaggcttgtctaatagcctcttaggctcctt 38138230  T
Q  231 gatttggtcaatagcttcaagaagggtaggcccatcataccagtcaaggttagtagagcgctcaacgatgttatctcccttaaagccagagatgggaaca 330  Q
    ||||||||||| ||||||||||||||| || || | |||||||||||||||||||||||| |||| |||||||||||||| ||| |||||||||||||||    
T  38138229 gatttggtcaagagcttcaagaagggtgggacccttataccagtcaaggttagtagagcgttcaatgatgttatctccctcaaaaccagagatgggaaca 38138130  T
Q  331 aa 332  Q
    ||    
T  38138129 aa 38138128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 87 - 332
Target Start/End: Original strand, 43044767 - 43045012
Alignment:
Q  87 agtaggagcaaaagtcagtaccattccgggctttaataccccagtctcaacacgtcccacaggtacagttccaatacctccaatcttgtagacatgctga 186  Q
    |||||| |||||||| |  |||||||| || ||||  || |||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||| ||||    
T  43044767 agtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccacaggcacagttccaattcctccaatcttgtagacatcctga 43044866  T
Q  187 aggggcagttgcagaggcttgccttcaggcctcttaggttcactgatttggtcaatagcttcaagaagggtaggcccatcataccagtcaaggttagtag 286  Q
    || || ||| | || |||||| ||  |||||||||||| ||| ||||||||||||  || ||||||||||| || || |  |||||||||||||| ||||    
T  43044867 agtggtagtcggaggggcttgtctgaaggcctcttaggctcattgatttggtcaagggcctcaagaagggttggacccttgtaccagtcaaggtttgtag 43044966  T
Q  287 agcgctcaacgatgttatctcccttaaagccagagatgggaacaaa 332  Q
    ||||||| |  ||||||||||||| ||| |||||||||||||||||    
T  43044967 agcgctcgatcatgttatctccctcaaaaccagagatgggaacaaa 43045012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 87 - 332
Target Start/End: Complemental strand, 43067224 - 43066979
Alignment:
Q  87 agtaggagcaaaagtcagtaccattccgggctttaataccccagtctcaacacgtcccacaggtacagttccaatacctccaatcttgtagacatgctga 186  Q
    |||||| |||||||| |  |||||||| || ||||  || |||||||| ||||| |||||||| ||||||||||| |||||||||||||||||||  |||    
T  43067224 agtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccacaggcacagttccaattcctccaatcttgtagacatcttga 43067125  T
Q  187 aggggcagttgcagaggcttgccttcaggcctcttaggttcactgatttggtcaatagcttcaagaagggtaggcccatcataccagtcaaggttagtag 286  Q
    || || ||| | || |||||| ||  |||||||||||| ||  ||||||||||||  || ||||||||||| || || |  |||||||||||||| ||||    
T  43067124 agtggtagtcggaggggcttgtctgaaggcctcttaggctcgttgatttggtcaagggcctcaagaagggttggacccttgtaccagtcaaggtttgtag 43067025  T
Q  287 agcgctcaacgatgttatctcccttaaagccagagatgggaacaaa 332  Q
    ||||||| |  ||||||||||||| ||| |||||||||||||||||    
T  43067024 agcgctcgatcatgttatctccctcaaaaccagagatgggaacaaa 43066979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 87 - 332
Target Start/End: Original strand, 43083611 - 43083856
Alignment:
Q  87 agtaggagcaaaagtcagtaccattccgggctttaataccccagtctcaacacgtcccacaggtacagttccaatacctccaatcttgtagacatgctga 186  Q
    |||||| |||||||| |  |||||||| || ||||  || |||||||| ||||| |||||||| ||||||||||| |||||||||||||||||||  |||    
T  43083611 agtaggggcaaaagtgataaccattccaggttttatgacaccagtctcgacacgccccacaggcacagttccaattcctccaatcttgtagacatcttga 43083710  T
Q  187 aggggcagttgcagaggcttgccttcaggcctcttaggttcactgatttggtcaatagcttcaagaagggtaggcccatcataccagtcaaggttagtag 286  Q
    || || ||| | || |||||| ||  |||||||||||| ||  ||||||||||||  || ||||||||||| || || |  |||||||||||||| ||||    
T  43083711 agtggtagtcggaggggcttgtctgaaggcctcttaggctcgttgatttggtcaagtgcctcaagaagggttggacccttgtaccagtcaaggtttgtag 43083810  T
Q  287 agcgctcaacgatgttatctcccttaaagccagagatgggaacaaa 332  Q
    ||||||| |  ||||||||||||| ||| |||||||||||||||||    
T  43083811 agcgctcgatcatgttatctccctcaaaaccagagatgggaacaaa 43083856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 94 - 331
Target Start/End: Complemental strand, 45984202 - 45983965
Alignment:
Q  94 gcaaaagtcagtaccattccgggctttaataccccagtctcaacacgtcccacaggtacagttccaatacctccaatcttgtagacatgctgaaggggca 193  Q
    ||||||||||| |||||||| || || ||    ||||||||||||||||||||||| |||||||| || ||||||||||||||||||| |||||| || |    
T  45984202 gcaaaagtcagcaccattccagggttcaaggaaccagtctcaacacgtcccacaggcacagttccgattcctccaatcttgtagacatcctgaagtggta 45984103  T
Q  194 gttgcagaggcttgccttcaggcctcttaggttcactgatttggtcaatagcttcaagaagggtaggcccatcataccagtcaaggttagtagagcgctc 293  Q
     |   ||||||||| ||   |||||| |||| ||  |||||||||||||||||||||||||||| || || |  ||||| ||||| ||||||||||||||    
T  45984102 ttctgagaggcttgtctgatggcctcataggctcgttgatttggtcaatagcttcaagaagggttggacccttgtaccaatcaagattagtagagcgctc 45984003  T
Q  294 aacgatgttatctcccttaaagccagagatgggaacaa 331  Q
    ||  | ||||||||||| ||| ||||||||||||||||    
T  45984002 aatcaagttatctccctcaaaaccagagatgggaacaa 45983965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 87 - 332
Target Start/End: Original strand, 3300501 - 3300746
Alignment:
Q  87 agtaggagcaaaagtcagtaccattccgggctttaataccccagtctcaacacgtcccacaggtacagttccaatacctccaatcttgtagacatgctga 186  Q
    |||||| |||||||| |  |||||||| || ||||  || |||||||| ||||| |||||||| ||||| ||||| ||||||||||||||||||| ||||    
T  3300501 agtaggggcaaaagtgacaaccattccaggttttatgacaccagtctcgacacgccccacaggcacagtcccaattcctccaatcttgtagacatcctga 3300600  T
Q  187 aggggcagttgcagaggcttgccttcaggcctcttaggttcactgatttggtcaatagcttcaagaagggtaggcccatcataccagtcaaggttagtag 286  Q
    || || ||  | || |||||| ||   ||||||||||| ||  |||||||||||| ||| |||||||||||||| || |  ||||||||||| || ||||    
T  3300601 agcggtagacggaggggcttgtctgatggcctcttaggctcgttgatttggtcaagagcctcaagaagggtaggacccttgtaccagtcaagatttgtag 3300700  T
Q  287 agcgctcaacgatgttatctcccttaaagccagagatgggaacaaa 332  Q
    ||||||| |  ||||||||||||| ||| |||||||||||||||||    
T  3300701 agcgctcgatcatgttatctccctcaaaaccagagatgggaacaaa 3300746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 130 - 328
Target Start/End: Original strand, 50912189 - 50912387
Alignment:
Q  130 gtctcaacacgtcccacaggtacagttccaatacctccaatcttgtagacatgctgaaggggcagttgcagaggcttgccttcaggcctcttaggttcac 229  Q
    ||||||| |||||||||||||||| |||||||  |||||||||||||||||  |||||| || | | | |||||| ||  |   || || ||||| ||      
T  50912189 gtctcaatacgtcccacaggtacaattccaatttctccaatcttgtagacaacctgaagtggtaatcggagaggcatgtgtgatggtctattaggctcct 50912288  T
Q  230 tgatttggtcaatagcttcaagaagggtaggcccatcataccagtcaaggttagtagagcgctcaacgatgttatctcccttaaagccagagatgggaa 328  Q
    ||||||| |||| |||||||| |||||| || || |  |||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||    
T  50912289 tgatttgatcaagagcttcaataagggtgggacctttgtaccagtcaaggttagtagagcgctcaatgatgttatctccctcaaaaccagagatgggaa 50912387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 87 - 332
Target Start/End: Complemental strand, 43077071 - 43076834
Alignment:
Q  87 agtaggagcaaaagtcagtaccattccgggctttaataccccagtctcaacacgtcccacaggtacagttccaatacctccaatcttgtagacatgctga 186  Q
    |||||| ||||||||||  |||||||| || || || || ||||||||||||||| ||||||||||||||||||| |||| || |||||||||||         
T  43077071 agtaggggcaaaagtcaccaccattccaggtttcaagacaccagtctcaacacgtgccacaggtacagttccaattcctctaaacttgtagacat----- 43076977  T
Q  187 aggggcagttgcagaggcttgccttcaggcctcttaggttcactgatttggtcaatagcttcaagaagggtaggcccatcataccagtcaaggttagtag 286  Q
        | ||| | ||  ||||| ||  |||||||||||| ||  ||||||||||||  ||  |||||||||| || || |  ||||||| |||||| ||||    
T  43076976 ---tgtagtcggaggtgcttgtctgaaggcctcttaggctcgttgatttggtcaagggccccaagaagggttggacccttgtaccagttaaggtttgtag 43076880  T
Q  287 agcgctcaacgatgttatctcccttaaagccagagatgggaacaaa 332  Q
    ||||||| |  ||||||||||||| ||| |||||||||||||||||    
T  43076879 agcgctcgatcatgttatctccctcaaaaccagagatgggaacaaa 43076834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 94 - 310
Target Start/End: Complemental strand, 7891458 - 7891242
Alignment:
Q  94 gcaaaagtcagtaccattccgggctttaataccccagtctcaacacgtcccacaggtacagttccaatacctccaatcttgtagacatgctgaaggggca 193  Q
    ||||||||||| |||||||| || || || |  |||| |||||| ||||||||||| ||| ||||||| |||||||||||||||||||  ||||| || |    
T  7891458 gcaaaagtcagcaccattccaggtttcaagataccagactcaacgcgtcccacaggcacaattccaattcctccaatcttgtagacatcttgaagtggta 7891359  T
Q  194 gttgcagaggcttgccttcaggcctcttaggttcactgatttggtcaatagcttcaagaagggtaggcccatcataccagtcaaggttagtagagcgctc 293  Q
     | | |||||| ||  |     |||||||||    |||| |||||||| ||||||||||||||| || ||    ||||| |||||||||| |||||||||    
T  7891358 atcggagaggcctgaatattaacctcttaggccttctgaattggtcaagagcttcaagaagggtgggacccgtgtaccaatcaaggttagaagagcgctc 7891259  T
Q  294 aacgatgttatctccct 310  Q
    || ||||||||||||||    
T  7891258 aatgatgttatctccct 7891242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 230 - 308
Target Start/End: Complemental strand, 40035063 - 40034985
Alignment:
Q  230 tgatttggtcaatagcttcaagaagggtaggcccatcataccagtcaaggttagtagagcgctcaacgatgttatctcc 308  Q
    |||||||||| |||||||||| |||||| || || |  ||||| |||||||||||||||||||||| |||||| |||||    
T  40035063 tgatttggtcgatagcttcaaaaagggtgggacctttgtaccaatcaaggttagtagagcgctcaatgatgttttctcc 40034985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 127 - 332
Target Start/End: Original strand, 4231272 - 4231477
Alignment:
Q  127 ccagtctcaacacgtcccacaggtacagttccaatacctccaatcttgtagacatgctgaaggggcagttgcagaggcttgccttcaggcctcttaggtt 226  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||| || ||| | || |||||| ||   ||||||||||| |    
T  4231272 ccagtctcaacacgtcccacaggaacagttccaattcctccaatcttgtagacatcctgaagaggtagtcggaggggcttgtctgatggcctcttaggct 4231371  T
Q  227 cactgatttggtcaatagcttcaagaagggtaggcccatcataccagtcaaggttagtagagcgctcaacgatgttatctcccttaaagccagagatggg 326  Q
    || ||||||| |||| ||| |||||||| || || || |  ||||||||||| || |||||||||||||  ||||||||||||| ||| |||||||||||    
T  4231372 cattgatttgatcaagagcctcaagaagtgttggacccttgtaccagtcaagatttgtagagcgctcaatcatgttatctccctcaaaaccagagatggg 4231471  T
Q  327 aacaaa 332  Q
    ||||||    
T  4231472 aacaaa 4231477  T

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Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 130 - 332
Target Start/End: Original strand, 4619499 - 4619701
Alignment:
Q  130 gtctcaacacgtcccacaggtacagttccaatacctccaatcttgtagacatgctgaaggggcagttgcagaggcttgccttcaggcctcttaggttcac 229  Q
    |||||||||| ||||||||| ||||||||||| ||||||||||||||||||| | |||| || | | | |||||||||  |   ||||| ||||| ||      
T  4619499 gtctcaacacatcccacaggcacagttccaattcctccaatcttgtagacatcccgaagtggtaatcggagaggcttgtttgatggcctattaggctcgt 4619598  T
Q  230 tgatttggtcaatagcttcaagaagggtaggcccatcataccagtcaaggttagtagagcgctcaacgatgttatctcccttaaagccagagatgggaac 329  Q
    |||||||||||| ||||||||||||||| || || || ||||||||||| |||| ||| |||||||  | ||||||||||| ||| ||||||||||||||    
T  4619599 tgatttggtcaagagcttcaagaagggtgggaccctcgtaccagtcaagattagaagaacgctcaatcaagttatctccctcaaaaccagagatgggaac 4619698  T
Q  330 aaa 332  Q
    |||    
T  4619699 aaa 4619701  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 310
Target Start/End: Original strand, 1846263 - 1846479
Alignment:
Q  94 gcaaaagtcagtaccattccgggctttaataccccagtctcaacacgtcccacaggtacagttccaatacctccaatcttgtagacatgctgaaggggca 193  Q
    ||||||||||| |||||||| || || || |  |||| |||||| ||||||||||| ||| ||||||| |||||||||||||||||||  ||||| || |    
T  1846263 gcaaaagtcagcaccattccaggtttcaagataccagactcaacgcgtcccacaggcacaattccaattcctccaatcttgtagacatcttgaagtggta 1846362  T
Q  194 gttgcagaggcttgccttcaggcctcttaggttcactgatttggtcaatagcttcaagaagggtaggcccatcataccagtcaaggttagtagagcgctc 293  Q
     | | |||||| ||  |     |||||||||    ||||||||||||| ||||||||||||||| || ||    |||||||||||||||| |||| ||||    
T  1846363 atcggagaggcctgaatattaacctcttaggccttctgatttggtcaagagcttcaagaagggtgggacccgtgtaccagtcaaggttagaagagtgctc 1846462  T
Q  294 aacgatgttatctccct 310  Q
    || ||||||||||||||    
T  1846463 aatgatgttatctccct 1846479  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 332
Target Start/End: Complemental strand, 4787773 - 4787678
Alignment:
Q  237 gtcaatagcttcaagaagggtagg-cccatcataccagtcaaggttagtagagcgctcaacgatgttatctcccttaaagccagagatgggaacaaa 332  Q
    ||||||||||||||||||||| || |||||  ||||||||||  ||||| ||||| ||||  | ||||||||| | ||| | |||||||||||||||    
T  4787773 gtcaatagcttcaagaagggtcggacccatt-taccagtcaaaattagtggagcggtcaatcaagttatctccatcaaaactagagatgggaacaaa 4787678  T

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Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 156 - 332
Target Start/End: Original strand, 16348983 - 16349159
Alignment:
Q  156 tccaatacctccaatcttgtagacatgctgaaggggcagttgcagaggcttgccttcaggcctcttaggttcactgatttggtcaatagcttcaagaagg 255  Q
    |||||| ||||||||||||||||||  |||||| || | | | ||||||||| ||    |||||||||| ||  ||||| |||||| |||||||||||||    
T  16348983 tccaattcctccaatcttgtagacaccctgaagtggtaatcggagaggcttgtctgatagcctcttaggctcgttgattcggtcaagagcttcaagaagg 16349082  T
Q  256 gtaggcccatcataccagtcaaggttagtagagcgctcaacgatgttatctcccttaaagccagagatgggaacaaa 332  Q
    || || || |  ||||  ||||| || |||||| ||||||| | ||||||||||| ||| |||||||||||||||||    
T  16349083 gtgggacccttgtacccatcaagttttgtagagggctcaaccaagttatctccctcaaaaccagagatgggaacaaa 16349159  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 268 - 332
Target Start/End: Complemental strand, 39242601 - 39242537
Alignment:
Q  268 taccagtcaaggttagtagagcgctcaacgatgttatctcccttaaagccagagatgggaacaaa 332  Q
    ||||||||||  ||||||||||||||||  | ||||||||| ||||| |||||||||||||||||    
T  39242601 taccagtcaatattagtagagcgctcaatcaagttatctccgttaaaaccagagatgggaacaaa 39242537  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 181
Target Start/End: Complemental strand, 7520192 - 7520141
Alignment:
Q  130 gtctcaacacgtcccacaggtacagttccaatacctccaatcttgtagacat 181  Q
    |||||||||||||| || || |||||||||||||| ||||||||||| ||||    
T  7520192 gtctcaacacgtccaactggcacagttccaataccaccaatcttgtaaacat 7520141  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 181
Target Start/End: Complemental strand, 7529729 - 7529678
Alignment:
Q  130 gtctcaacacgtcccacaggtacagttccaatacctccaatcttgtagacat 181  Q
    |||||||||||||| || || |||||||||||||| ||||||||||| ||||    
T  7529729 gtctcaacacgtccgactggcacagttccaataccaccaatcttgtaaacat 7529678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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