View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14483_high_36 (Length: 305)
Name: NF14483_high_36
Description: NF14483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14483_high_36 |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 297
Target Start/End: Original strand, 23993226 - 23993505
Alignment:
| Q |
18 |
taggtaataattgttggagaaatattcagagctttactgcggttcctcttaattggtttaatgttcatattcgacacagtcacctcaacgacggtgtgca |
117 |
Q |
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| T |
23993226 |
taggtaataattgttggagaaatattcagagctttactgcggttcctcttaattggtttaatgttcatattcgacacagtcacctcaacgacggtgtgca |
23993325 |
T |
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| Q |
118 |
ttttaatggcactattaattggatgacttacaagtctattattcatgctgagcaatttcagattctttcacttgacctttcaacggagacatacaagacg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23993326 |
ttttaatggcactattaattggatgacttacaagtctattattcatgctgagcaatttcagattctttcacttgacctttcaacggagacatacaagacg |
23993425 |
T |
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| Q |
218 |
tttctgctgccttcagattttaattgggttccatctcttcacattcagcagccagttcttagggttttgggtgacagtct |
297 |
Q |
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| T |
23993426 |
tttctgctgccttcagattttaatggggttccatctcttcacattcagcagccagttcttagggttttgagtgacagtct |
23993505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 24001894 - 24001940
Alignment:
| Q |
25 |
taattgttggagaaatattcagagctttactgcggttcctcttaatt |
71 |
Q |
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| T |
24001894 |
taattgttggagaaatattcagagctttcctgtgtttcctcttaatt |
24001940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 24002034 - 24002095
Alignment:
| Q |
153 |
ctattattcatgctgagcaatttcagattctttcacttgacctttcaacggagacatacaag |
214 |
Q |
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| T |
24002034 |
ctattattcacgttgagcaatttgtgattgtttcacttgacctttcaacggaatcatacaag |
24002095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 24010218 - 24010269
Alignment:
| Q |
153 |
ctattattcatgctgagcaatttcagattctttcacttgacctttcaacgga |
204 |
Q |
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| T |
24010218 |
ctattattcacgttgagcaatttgcgattgtttcacttgacctttcaacgga |
24010269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 24035445 - 24035496
Alignment:
| Q |
24 |
ataattgttggagaaatattcagagctttactgcggttcctcttaattggtt |
75 |
Q |
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| T |
24035445 |
ataattgttggagaaatattcagagctttcctatatttcctcttaattggtt |
24035496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 241
Target Start/End: Original strand, 15508583 - 15508669
Alignment:
| Q |
155 |
attattcatgctgagcaatttcagattctttcacttgacctttcaacggagacatacaagacgtttctgctgccttcagattttaat |
241 |
Q |
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| T |
15508583 |
attactcatgttgagcaatttatgattgttgcacttgacctttcgacagaaaaatacaagcggtttctgctgccttcgggttttaat |
15508669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 26256617 - 26256671
Alignment:
| Q |
160 |
tcatgctgagcaatttcagattctttcacttgacctttcaacggagacatacaag |
214 |
Q |
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| T |
26256617 |
tcatgttgagcaatttgtgattatttcgcttgatctttcaacggagacatacaag |
26256671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 212
Target Start/End: Complemental strand, 11345342 - 11345277
Alignment:
| Q |
147 |
acaagtctattattcatgctgagcaatttcagattctttcacttgacctttcaacggagacataca |
212 |
Q |
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| T |
11345342 |
acaagtctattactcatgttgatcaattcaagattgtttcccttgacctttcaactgagacataca |
11345277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 212
Target Start/End: Complemental strand, 11338817 - 11338752
Alignment:
| Q |
147 |
acaagtctattattcatgctgagcaatttcagattctttcacttgacctttcaacggagacataca |
212 |
Q |
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|||||||||||| ||||| ||| ||||| ||||| |||| ||||| |||||||| |||||||||| |
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| T |
11338817 |
acaagtctattactcatgttgatcaattcaagattgtttcccttgatctttcaactgagacataca |
11338752 |
T |
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