View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14483_high_37 (Length: 305)
Name: NF14483_high_37
Description: NF14483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14483_high_37 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 20 - 296
Target Start/End: Complemental strand, 34216987 - 34216711
Alignment:
| Q |
20 |
agaatttgcaccacagatagcataattatcacaactgtctgcaggtccgacaaagaaaagttgccaactatttgtctgattcgacaacatgtatcgcgct |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34216987 |
agaatttgcaccacagatagcataattatcacaactgtctgcaggtccgacaaagaaaagttgccaactatttgtctgatccgacaacatgtatcgcgct |
34216888 |
T |
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| Q |
120 |
atttgaccagttgaagataccaagtatcttgaaacaacagacttgttcaaaagttcatatccataagaaatttccttctcagtaatcacaaatgaaaagt |
219 |
Q |
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| T |
34216887 |
atttgaccagttgaagataccaagtatcttgaaacaacagacttgttcaaaagttcatatccataagaaatttccttctcagtaatcacaaatgaaaagt |
34216788 |
T |
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| Q |
220 |
tataggctttgtaaagtgtctcagaaggaattcctgataaaattcttccattccatgaacctattctaaagaataat |
296 |
Q |
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| T |
34216787 |
tataggctttgtaaagtgtctcagaaggaattcctgataaaattcttccattccatgaacctattctaaagaataat |
34216711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 20 - 296
Target Start/End: Original strand, 34194589 - 34194865
Alignment:
| Q |
20 |
agaatttgcaccacagatagcataattatcacaactg-tctgcaggtccgacaaagaaaagttgccaactatttgtctgattcgacaacatgtatcgcgc |
118 |
Q |
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| T |
34194589 |
agaatttgcaccacaaagagcataattatcgca-ctgatccgaaggaccaacaaagacaagttgccaactctttgtctgatcggacaacatgtaacgcga |
34194687 |
T |
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| Q |
119 |
tatttgaccagttgaagataccaagtatcttgaaacaacagacttgttcaaaagttcatatccataagaaatttccttctcagtaatcacaaatgaaaag |
218 |
Q |
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| T |
34194688 |
tacttgaccgattggagttagcatgtaccttgaaacaatggacttgtccaaaagttcatatccataagaaacttccttttcagtaatcacaaatgaaata |
34194787 |
T |
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| Q |
219 |
ttataggctttgtaaagtgtctcagaaggaattcctgataaaattcttccattccatgaacctattctaaagaataat |
296 |
Q |
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|| ||| ||||||||| ||| ||||| ||||| ||||||| |||||||||||||||||| |||||| |||||| |
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| T |
34194788 |
ttgaaggatttgtaaagcgtcgtagaagagattccggataaaaaatttccattccatgaacctactctaaataataat |
34194865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 286
Target Start/End: Complemental strand, 34205562 - 34205296
Alignment:
| Q |
20 |
agaatttgcaccacagatagcataattatcacaactgtctgcaggtccgacaaagaaaagttgccaactatttgtctgattcgacaacatgtatcgcgct |
119 |
Q |
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||||||||||||||||||| ||| |||||||||||||||||||| || | ||||||||||| |||| ||| |||| | ||| || ||||| |||| |
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| T |
34205562 |
agaatttgcaccacagataagatagttatcacaactgtctgcagggccaagaaagaaaagttcaaaactctttttctggtccgaaaatatgtaacgcgtc |
34205463 |
T |
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| Q |
120 |
atttgaccagttgaagataccaagtatcttgaaacaacagacttgttcaaaagttcatatccataagaaatttccttctcagtaatcacaaatgaaaagt |
219 |
Q |
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||||| || || || | | || ||| |||||||| | || | ||||||||||||||||||||||| |||| ||||||||| | ||| | || | |
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| T |
34205462 |
atttgccctgtcgatgtgagcatgtaccttgaaactattgatgattccaaaagttcatatccataagaaacttccgtctcagtaaaaaaaaaagtgaaat |
34205363 |
T |
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| Q |
220 |
tataggctttgtaaagtgtctcagaaggaattcctgataaaattcttccattccatgaacctattct |
286 |
Q |
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|| || | |||||| ||| |||||||||||| | ||| || |||||||||||||||||||||| |
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| T |
34205362 |
taaagtttgagtaaagcgtcgtagaaggaattccagttaacatatttccattccatgaacctattct |
34205296 |
T |
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