View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14483_high_40 (Length: 298)

Name: NF14483_high_40

Description: NF14483

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF14483_high_40

[»] chr5 (2 HSPs)

Target: chr5 (Bit Score: 173; Significance: 5e-93; HSPs: 2)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 173; E-Value: 5e-93

Query Start/End: Original strand, 11 - 183

Target Start/End: Original strand, 15218720 - 15218892

Alignment:

Q	11	cagcacagataatgacttatggtggcatagaactgagttcacctactcttgcatctgcaatgcttaacctcattccagctttcacttttgtacttgcact	110	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	15218720	cagcacagataatgacttatggtggcatagaactgagttcacctactcttgcatctgcaatgcttaacctcattccagctttcacttttgtacttgcact	15218819	T

Q	111	gattttcaggttcctcatatgattattaaactttactaaaaggtgaattttatggaaaatatatttctaacac	183	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	15218820	gattttcaggttcctcatatgattattaaactttactaaaaggtgaattttatggaaaatatatttctaacac	15218892	T

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Target: chr5; HSP #2

Raw Score: 33; E-Value: 0.000000002

Query Start/End: Original strand, 206 - 246

Target Start/End: Original strand, 15218916 - 15218956

Alignment:

Q	206	attagatgaaattcatatggatcccacattttgaaaatgga	246	Q
		\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	15218916	attagataaaactcatatggatcccacattttgaaaatgga	15218956	T

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