View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14483_high_41 (Length: 297)

Name: NF14483_high_41
Description: NF14483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14483_high_41
NF14483_high_41
[»] chr6 (42 HSPs)
chr6 (1-287)||(27604927-27605213)
chr6 (1-222)||(28780889-28781104)
chr6 (1-211)||(28786039-28786243)
chr6 (1-222)||(27725067-27725281)
chr6 (1-222)||(27718601-27718816)
chr6 (1-211)||(27228995-27229197)
chr6 (5-211)||(26802199-26802403)
chr6 (1-189)||(27611224-27611406)
chr6 (5-211)||(26655750-26655950)
chr6 (5-211)||(26761721-26761921)
chr6 (1-187)||(28792184-28792364)
chr6 (1-222)||(27698716-27698929)
chr6 (5-227)||(27338291-27338500)
chr6 (5-227)||(27399031-27399240)
chr6 (5-204)||(27427829-27428020)
chr6 (1-182)||(31284078-31284253)
chr6 (4-209)||(26823609-26823802)
chr6 (1-210)||(27678716-27678911)
chr6 (1-85)||(27531419-27531503)
chr6 (3-104)||(26884025-26884126)
chr6 (113-239)||(26055696-26055818)
chr6 (114-239)||(26048615-26048736)
chr6 (114-239)||(26069784-26069905)
chr6 (114-239)||(26075666-26075787)
chr6 (114-239)||(26142635-26142756)
chr6 (1-112)||(26622830-26622941)
chr6 (1-112)||(26728808-26728919)
chr6 (114-208)||(25481540-25481633)
chr6 (114-208)||(25538338-25538431)
chr6 (1-143)||(26646302-26646444)
chr6 (1-143)||(26752270-26752412)
chr6 (9-210)||(27706632-27706819)
chr6 (1-140)||(27593242-27593375)
chr6 (114-224)||(25579499-25579610)
chr6 (1-104)||(26861478-26861581)
chr6 (6-140)||(27677841-27677969)
chr6 (13-104)||(28325343-28325434)
chr6 (6-102)||(28098596-28098692)
chr6 (1-140)||(25071485-25071624)
chr6 (14-71)||(28226845-28226902)
chr6 (16-101)||(28234429-28234514)
chr6 (18-110)||(28185222-28185314)
[»] scaffold0277 (2 HSPs)
scaffold0277 (1-222)||(13854-14069)
scaffold0277 (1-211)||(4893-5102)
[»] scaffold1254 (1 HSPs)
scaffold1254 (1-227)||(139-352)
[»] scaffold0419 (1 HSPs)
scaffold0419 (1-227)||(7277-7490)
[»] scaffold0349 (3 HSPs)
scaffold0349 (1-222)||(3644-3858)
scaffold0349 (1-222)||(14577-14790)
scaffold0349 (40-222)||(8062-8238)
[»] chr4 (8 HSPs)
chr4 (1-221)||(18699609-18699821)
chr4 (1-221)||(18655686-18655898)
chr4 (1-211)||(18679776-18679978)
chr4 (1-211)||(18731713-18731915)
chr4 (5-204)||(17989263-17989454)
chr4 (5-204)||(18073535-18073726)
chr4 (1-145)||(18724294-18724432)
chr4 (16-65)||(5091191-5091240)
[»] scaffold0003 (1 HSPs)
scaffold0003 (5-204)||(59343-59534)
[»] chr1 (2 HSPs)
chr1 (10-169)||(28164580-28164733)
chr1 (10-166)||(28127898-28128042)
[»] scaffold0038 (3 HSPs)
scaffold0038 (13-104)||(116658-116749)
scaffold0038 (14-71)||(27343-27400)
scaffold0038 (16-101)||(34590-34675)
[»] chr8 (1 HSPs)
chr8 (1-138)||(29273992-29274123)
[»] scaffold0019 (1 HSPs)
scaffold0019 (14-104)||(58517-58607)
[»] chr2 (1 HSPs)
chr2 (16-62)||(3279592-3279638)


Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 42)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 27604927 - 27605213
Alignment:
Q  1 tcagtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27604927 tcagtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaag 27605026  T
Q  101 aggatgaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27605027 aggatgaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttg 27605126  T
Q  201 tggtctgtgatttggagtctttaatataacaaggagaaattgttcttaagaaatagttatttttgtcataagtttttgcggtctgtg 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  27605127 tggtctgtgatttggagtctttaatataacaaggagaaattgttcttaataaatagttattttggtcataagtttttgcggtctgtg 27605213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 28781104 - 28780889
Alignment:
Q  1 tcagtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaag 100  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  28781104 tcagtaagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatgcagaggaaaatgaag 28781005  T
Q  101 aggatgaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttg 200  Q
          |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||    
T  28781004 ------aggaagaggaaggtaattgcatagccatgataattgagagaaattggatgaaaaaagagtttgagaattcagaatatgaatgagtttgtttttg 28780911  T
Q  201 tggtctgtgatttggagtcttt 222  Q
    |||||||||||||  |||||||    
T  28780910 tggtctgtgatttaaagtcttt 28780889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 28786243 - 28786039
Alignment:
Q  1 tcagtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaag 100  Q
    ||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  28786243 tcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataggaaaatgaag 28786144  T
Q  101 aggatgaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttg 200  Q
    ||||||      |||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||    
T  28786143 aggatg------aggaaggtgattgtatagccataagaattgagagaaattggatgaaaaaagagtttgagaattcagaatatgaatgagtttgtttttg 28786050  T
Q  201 tggtctgtgat 211  Q
    |||||||||||    
T  28786049 tggtctgtgat 28786039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 27725067 - 27725281
Alignment:
Q  1 tcagtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaag 100  Q
    ||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  27725067 tcagtaagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatccataggaaaatgaa- 27725165  T
Q  101 aggatgaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttg 200  Q
         ||||||||||||||| |||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  27725166 -----gaggatgaggaaggtgattgtatagccatgacaattgagagaaataggatgaaaaaagagtttgagaatgcagaatatgaatg-gtaaatttttg 27725259  T
Q  201 tggtctgtgatttggagtcttt 222  Q
    |||||||| || || |||||||    
T  27725260 tggtctgttatgtgaagtcttt 27725281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 27718601 - 27718816
Alignment:
Q  1 tcagtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaag 100  Q
    ||||||||||||||||||||||| |||||||||| ||  ||||||||||||||||||||||| ||||||||||||||||||||| ||| ||| |||||||    
T  27718601 tcagtaagagccttgtagagatttccggtaaaactgtgccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccatgggagaatgaag 27718700  T
Q  101 aggatgaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttg 200  Q
    |||      ||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||    
T  27718701 agg------atgaggaaggtgattgtatagccatgagaattgagagaaataggatgaaaaaagagtttgagaatgcagaatatgaatgagtgaatttttg 27718794  T
Q  201 tggtctgtgatttggagtcttt 222  Q
    || |||||||| || |||||||    
T  27718795 tgttctgtgatgtgaagtcttt 27718816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 27229197 - 27228995
Alignment:
Q  1 tcagtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaag 100  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  27229197 tcagtaagagccttgtagagattgccggtaaaaccgtgccgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatccaaaggaaaatgaag 27229098  T
Q  101 aggatgaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttg 200  Q
          |||| ||||||||| |||| |||||||||||| |||||||||||||||||  |||||||||| ||||||||||||||||||||||| |||||||    
T  27229097 ------aggaagaggaaggtgattgtatagccatgagacttgagagaaattggatg--aaaagagttttagaatgcagaatatgaatgagtatgtttttg 27229006  T
Q  201 tggtctgtgat 211  Q
    |||| ||||||    
T  27229005 tggtatgtgat 27228995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 5 - 211
Target Start/End: Complemental strand, 26802403 - 26802199
Alignment:
Q  5 taagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaagagga 104  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||    
T  26802403 taagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagagga 26802304  T
Q  105 tgaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatg----aaaaaagagtttgagaatgcagaatatgaatgagtaagtttttg 200  Q
    ||      |||||||  | ||||||||||||| ||||| |||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||    
T  26802303 tg------aggaaggagactgcatagccatgaaaattgtgagaaattggatgaaaaaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttg 26802210  T
Q  201 tggtctgtgat 211  Q
    |||||||||||    
T  26802209 tggtctgtgat 26802199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 27611224 - 27611406
Alignment:
Q  1 tcagtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaag 100  Q
    ||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||     
T  27611224 tcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataggaaaatgaa- 27611322  T
Q  101 aggatgaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatga 189  Q
         || || ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27611323 -----gaagaagaggaagctaattgcatagccatgaaaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatga 27611406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 5 - 211
Target Start/End: Complemental strand, 26655950 - 26655750
Alignment:
Q  5 taagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaagagga 104  Q
    |||||||||||||||||||||||||||||||||  || |||||| ||||||||||||| ||||||||||||||  | ||  |||||||||||||||||||    
T  26655950 taagagccttgtagagattgccggtaaaaccgtgccgggtgtcaatgcccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagagga 26655851  T
Q  105 tgaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggt 204  Q
    ||||||      |||| |||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26655850 tgagga------aggtgattgtatagccatgagaattgagagaaaatggatgaaaaaagagtttgggaatgcagaatatgaatgagtaagtttttgtggt 26655757  T
Q  205 ctgtgat 211  Q
    |||||||    
T  26655756 ctgtgat 26655750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 5 - 211
Target Start/End: Complemental strand, 26761921 - 26761721
Alignment:
Q  5 taagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaagagga 104  Q
    |||||||||||||||||||||||||||||||||  || |||||| ||||||||||||| ||||||||||||||  | ||  |||||||||||||||||||    
T  26761921 taagagccttgtagagattgccggtaaaaccgtgccgggtgtcaatgcccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagagga 26761822  T
Q  105 tgaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggt 204  Q
    ||||||      |||| |||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26761821 tgagga------aggtgattgtatagccatgagaattgagagaaaatggatgaaaaaagagtttgggaatgcagaatatgaatgagtaagtttttgtggt 26761728  T
Q  205 ctgtgat 211  Q
    |||||||    
T  26761727 ctgtgat 26761721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 28792364 - 28792184
Alignment:
Q  1 tcagtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaag 100  Q
    ||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  28792364 tcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccataggaaaatgaag 28792265  T
Q  101 aggatgaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaat 187  Q
    ||||||      |||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28792264 aggatg------aggaaggtgattgtatagccataagaattgagagaaattggatgaaaaaagagtttgagaattcagaatatgaat 28792184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 27698716 - 27698929
Alignment:
Q  1 tcagtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaag 100  Q
    ||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||     
T  27698716 tcagtaagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtgcccctaaaactgatgaacacttggtaagtgaatccataggaaaatgaa- 27698814  T
Q  101 aggatgaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttg 200  Q
         | ||||||||||||| |||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||  |||||    
T  27698815 -----gtggatgaggaaggtgattgtatagccatgagaattgagagaaataggatg-aaaaagagtttgagaatgcagaatatgaatgagtaa-attttg 27698907  T
Q  201 tggtctgtgatttggagtcttt 222  Q
    || |||||||| || |||||||    
T  27698908 tgttctgtgatgtgaagtcttt 27698929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 5 - 227
Target Start/End: Original strand, 27338291 - 27338500
Alignment:
Q  5 taagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaagagga 104  Q
    ||||||||||||||||||||||||||||||||||  |||||||| || |||||||||| |||||||| |||||  ||||  || |||||| ||||         
T  27338291 taagagccttgtagagattgccggtaaaaccgtaaagagtgtcaatgtccctaaaactgaggaacacatggtatttgaacccagaggaaattgaa----- 27338385  T
Q  105 tgaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggt 204  Q
     ||||| |||||| || |||||||||||||||||||||||||||||  |||||||||| ||||||       ||||||||||||||||||||||||||||    
T  27338386 -gaggaagaggaaagtgattgcatagccatgagaattgagagaaataagatgaaaaaaaagtttg-------agaatatgaatgagtaagtttttgtggt 27338477  T
Q  205 ctgtgatttggagtctttaatat 227  Q
    ||||||| |||||||||||||||    
T  27338478 ctgtgatgtggagtctttaatat 27338500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 5 - 227
Target Start/End: Original strand, 27399031 - 27399240
Alignment:
Q  5 taagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaagagga 104  Q
    ||||||||||||||||||||||||||||||||||  |||||||| || |||||||||| |||||||| |||||  ||||  || |||||| ||||         
T  27399031 taagagccttgtagagattgccggtaaaaccgtaaagagtgtcaatgtccctaaaactgaggaacacatggtatttgaacccagaggaaattgaa----- 27399125  T
Q  105 tgaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggt 204  Q
     ||||| |||||| || |||||||||||||||||||||||||||||  |||||||||| ||||||       ||||||||||||||||||||||||||||    
T  27399126 -gaggaagaggaaagtgattgcatagccatgagaattgagagaaataagatgaaaaaaaagtttg-------agaatatgaatgagtaagtttttgtggt 27399217  T
Q  205 ctgtgatttggagtctttaatat 227  Q
    ||||||| |||||||||||||||    
T  27399218 ctgtgatgtggagtctttaatat 27399240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 5 - 204
Target Start/End: Original strand, 27427829 - 27428020
Alignment:
Q  5 taagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaagagga 104  Q
    ||||||||||  ||||||||||||| |||||||| |||||||| |||||| || || | |||||||| | |||| |||||||||||||||||||||||||    
T  27427829 taagagccttcaagagattgccggtgaaaccgtaccgagtgtcggtgcccttacaaatgaggaacacatcgtaactgaatgcataggaaaatgaagagga 27427928  T
Q  105 tgaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggt 204  Q
         || || ||||||||||||| |||||||||||||||||||||  ||||| ||  |||||||||||||||||||||||||||| | |||||||||||    
T  27427929 -----at-agaaaggtaattgcatggccatgagaattgagagaaataagatgagaa--gagtttgagaatgcagaatatgaatgaggatgtttttgtggt 27428020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 31284253 - 31284078
Alignment:
Q  1 tcagtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaag 100  Q
    ||||||||||||||||||||||||||||| ||||| || ||||||||| | ||||| ||||||||||| ||||||||  ||||| ||||||||| ||||     
T  31284253 tcagtaagagccttgtagagattgccggtgaaaccataccgagtgtcacttcccctgaaactaaggaatacttggtatttgaatacataggaaattgaa- 31284155  T
Q  101 aggatgaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaata 182  Q
         ||||| ||||||| | ||||||||||||||||| |||||||||  |||||||| ||||| |||||||||||||||||    
T  31284154 -----gaggaagaggaagatgattgcatagccatgagatttgagagaatatggatgaagaaagaatttgagaatgcagaata 31284078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 209
Target Start/End: Complemental strand, 26823802 - 26823609
Alignment:
Q  4 gtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaagagg 103  Q
    |||||||||||||||||||||||||||||  | || |||||||||| ||| |||||||| || |||||||||||  ||||  |||| |||| ||||||||    
T  26823802 gtaagagccttgtagagattgccggtaaattcataccgagtgtcagcgcctctaaaactgagaaacacttggtatttgaaatcatatgaaactgaagagg 26823703  T
Q  104 atgaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtgg 203  Q
    |            || | | ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||  |||||    
T  26823702 a------------agttgactgcatagccatgagaattgagagaaattggacgaagaaagagtttgagaatgcagaatatgaatgagtatgttactgtgg 26823615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 27678911 - 27678716
Alignment:
Q  1 tcagtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaag 100  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||||||| | || || ||||| ||||| ||||||||  || |  ||||||||| |||||    
T  27678911 tcagtaagagccttgtagagattcccggtgaaaccgtaccgagtgtcacttcctctgaaactgaggaatacttggtatttgtactcataggaaattgaag 27678812  T
Q  101 aggatgaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttg 200  Q
     ||| |||||      |||| ||||||||||||||||| || ||||||||| ||||||||||||||||||       ||||||||||||| |||||||||    
T  27678811 tggaagagga------aggtgattgcatagccatgagattttagagaaattagatgaaaaaagagtttga-------gaatatgaatgag-aagtttttg 27678726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 27531419 - 27531503
Alignment:
Q  1 tcagtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatg 85  Q
    ||||||||||||||||||||||| |||||||||||||  |||||||| | |||||||||||| ||||||||||||||||||||||    
T  27531419 tcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtccgcgcccctaaaactgaggaacacttggtaagtgaatg 27531503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 26884126 - 26884025
Alignment:
Q  3 agtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaagag 102  Q
    ||||||||||||||||||||| || || ||||| || ||||||||| | || || ||||| ||||||||||||||||||||| |||||||||||||||||    
T  26884126 agtaagagccttgtagagatttccagtgaaaccataccgagtgtcacttcctctgaaactgaggaacacttggtaagtgaatccataggaaaatgaagag 26884027  T
Q  103 ga 104  Q
    ||    
T  26884026 ga 26884025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 113 - 239
Target Start/End: Complemental strand, 26055818 - 26055696
Alignment:
Q  113 aggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtgatt 212  Q
    |||||||| |||||||||||||||||||||| ||||  |||||||||||||| ||||| |||| ||||||||||||||||| ||| |||||||||| |      
T  26055818 aggaaggtgattgcatagccatgagaattgaaagaatatggatgaaaaaagactttgaaaatggagaatatgaatgagtaa-tttgtgtggtctgttagg 26055720  T
Q  213 tggagtctttaatataacaaggagaaa 239  Q
    |||| |||||||   ||||||||||||    
T  26055719 tggattctttaa---aacaaggagaaa 26055696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 114 - 239
Target Start/End: Complemental strand, 26048736 - 26048615
Alignment:
Q  114 ggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtgattt 213  Q
    ||||||| |||||||||||||||||||||| ||||  |||||||||||||| ||||| |||| ||||||||||||||||| ||| |||||||||| |  |    
T  26048736 ggaaggtgattgcatagccatgagaattgaaagaatatggatgaaaaaagactttgaaaatggagaatatgaatgagtaa-tttgtgtggtctgttaggt 26048638  T
Q  214 ggagtctttaatataacaaggagaaa 239  Q
    ||| |||||||   ||||||||||||    
T  26048637 ggattctttaa---aacaaggagaaa 26048615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 114 - 239
Target Start/End: Complemental strand, 26069905 - 26069784
Alignment:
Q  114 ggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtgattt 213  Q
    ||||||| |||||||||||||||||||||| ||||  |||||||||||||| ||||| |||| ||||||||||||||||| ||| |||||||||| |  |    
T  26069905 ggaaggtgattgcatagccatgagaattgaaagaatatggatgaaaaaagactttgaaaatggagaatatgaatgagtaa-tttgtgtggtctgttaggt 26069807  T
Q  214 ggagtctttaatataacaaggagaaa 239  Q
    ||| |||||||   ||||||||||||    
T  26069806 ggattctttaa---aacaaggagaaa 26069784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 114 - 239
Target Start/End: Complemental strand, 26075787 - 26075666
Alignment:
Q  114 ggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtgattt 213  Q
    ||||||| |||||||||||||||||||||| ||||  |||||||||||||| ||||| |||| ||||||||||||||||| ||| |||||||||| |  |    
T  26075787 ggaaggtgattgcatagccatgagaattgaaagaatatggatgaaaaaagactttgaaaatggagaatatgaatgagtaa-tttgtgtggtctgttaggt 26075689  T
Q  214 ggagtctttaatataacaaggagaaa 239  Q
    ||| |||||||   ||||||||||||    
T  26075688 ggattctttaa---aacaaggagaaa 26075666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 114 - 239
Target Start/End: Complemental strand, 26142756 - 26142635
Alignment:
Q  114 ggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtgattt 213  Q
    ||||||| |||||||||||||||||||||| ||||  |||||||||||||| ||||| |||| ||||||||||||||||| ||| |||||||||| |  |    
T  26142756 ggaaggtgattgcatagccatgagaattgaaagaatatggatgaaaaaagactttgaaaatggagaatatgaatgagtaa-tttgtgtggtctgttaggt 26142658  T
Q  214 ggagtctttaatataacaaggagaaa 239  Q
    ||| |||||||   ||||||||||||    
T  26142657 ggattctttaa---aacaaggagaaa 26142635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 26622941 - 26622830
Alignment:
Q  1 tcagtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaag 100  Q
    ||||||||||||||||||||||| || || |||||||| ||||||||| |||| || ||||| ||||||||||||||  |||||  |||||||| |||||    
T  26622941 tcagtaagagccttgtagagatttccagtgaaaccgtaccgagtgtcactgcctctgaaacttaggaacacttggtatttgaattgataggaaattgaag 26622842  T
Q  101 aggatgaggatg 112  Q
    |||| |||||||    
T  26622841 aggaagaggatg 26622830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 26728919 - 26728808
Alignment:
Q  1 tcagtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaag 100  Q
    ||||||||||||||||||||||| || || |||||||| ||||||||| |||| || ||||| ||||||||||||||  |||||  |||||||| |||||    
T  26728919 tcagtaagagccttgtagagatttccagtgaaaccgtaccgagtgtcactgcctctgaaacttaggaacacttggtatttgaattgataggaaattgaag 26728820  T
Q  101 aggatgaggatg 112  Q
    |||| |||||||    
T  26728819 aggaagaggatg 26728808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 114 - 208
Target Start/End: Complemental strand, 25481633 - 25481540
Alignment:
Q  114 ggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgt 208  Q
    ||||||| |||||||||||||||||||||| |||| ||||||||||||| | ||||| |||| ||||||||||||||||| ||| ||||||||||    
T  25481633 ggaaggtgattgcatagccatgagaattgaaagaatttggatgaaaaaaaactttgaaaatggagaatatgaatgagtaa-tttgtgtggtctgt 25481540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 114 - 208
Target Start/End: Complemental strand, 25538431 - 25538338
Alignment:
Q  114 ggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgt 208  Q
    ||||||| |||||||||||||||||||||| |||| ||||||||||||||| ||||| |||| ||||||||||||| ||| ||| ||||||||||    
T  25538431 ggaaggtgattgcatagccatgagaattgaaagaatttggatgaaaaaagactttgaaaatggagaatatgaatgattaa-tttgtgtggtctgt 25538338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 26646444 - 26646302
Alignment:
Q  1 tcagtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaag 100  Q
    ||||||||||||||||||||||  || ||||||||||  ||||||||| ||||||| ||  | ||||| || ||||| |||||| | ||||||| | |||    
T  26646444 tcagtaagagccttgtagagatgtccagtaaaaccgtcacgagtgtcactgcccctgaagttgaggaagacctggtaggtgaatccgtaggaaattaaag 26646345  T
Q  101 aggatgaggatgaggaaggtaattgcatagccatgagaattga 143  Q
    |||| |||||  |||||||  ||||||||||||||||||||||    
T  26646344 aggaagaggaataggaaggagattgcatagccatgagaattga 26646302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 26752412 - 26752270
Alignment:
Q  1 tcagtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaag 100  Q
    ||||||||||||||||||||||  || ||||||||||  ||||||||| ||||||| ||  | ||||| || ||||| |||||| | ||||||| | |||    
T  26752412 tcagtaagagccttgtagagatgtccagtaaaaccgtcacgagtgtcactgcccctgaagttgaggaagacctggtaggtgaatccgtaggaaattaaag 26752313  T
Q  101 aggatgaggatgaggaaggtaattgcatagccatgagaattga 143  Q
    |||| |||||  |||||||  ||||||||||||||||||||||    
T  26752312 aggaagaggaataggaaggagattgcatagccatgagaattga 26752270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 210
Target Start/End: Original strand, 27706632 - 27706819
Alignment:
Q  9 agccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaagaggatgag 108  Q
    |||||||||||||||||| || |||||||| |||||||||   || || ||||| ||||| ||||||||  || |  ||||||||| ||||| ||| |||    
T  27706632 agccttgtagagattgcctgtgaaaccgtaccgagtgtcacctcctctgaaactgaggaatacttggtatttgtactcataggaaattgaagtggaagag 27706731  T
Q  109 gatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgt 208  Q
     |      |||| ||||||||||||||||| || ||||||||| |||||||||||||||||       |||||||||||||| |||||||||||||||||    
T  27706732 aa------aggtgattgcatagccatgagattttagagaaattagatgaaaaaagagtttg-------agaatatgaatgag-aagtttttgtggtctgt 27706817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 27593242 - 27593375
Alignment:
Q  1 tcagtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaag 100  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||| | || || ||||| ||||| ||||||||  || |  ||||||||| ||||     
T  27593242 tcagtaagagccttgtagagattgccggtgaaaccgtaccgagtgtcacttcctctgaaactgaggaatacttggtatttgtaatcataggaaattgaa- 27593340  T
Q  101 aggatgaggatgaggaaggtaattgcatagccatgagaat 140  Q
         | ||| ||||||||| |||||||||||||||||||    
T  27593341 -----gtggaagaggaaggtgattgcatagccatgagaat 27593375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 25579610 - 25579499
Alignment:
Q  114 ggaaggtaattgcatagccatgagaattgagagaaattggatga--aaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtgat 211  Q
    ||||||| |||||||||||||||||||||| |||| ||||||||  ||||| | ||||| |||| ||||||||||||||||| | | ||||||||||||     
T  25579610 ggaaggtgattgcatagccatgagaattgaaagaatttggatgaataaaaaaactttgaaaatggagaatatgaatgagtaa-tgtgtgtggtctgtgag 25579512  T
Q  212 ttggagtctttaa 224  Q
     |||| |||||||    
T  25579511 gtggattctttaa 25579499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 26861581 - 26861478
Alignment:
Q  1 tcagtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaag 100  Q
    ||||||||||||||||||||||| ||||||||||| || ||||||||| | || || ||||| ||||| || |||||  ||||| |||||||||  ||||    
T  26861581 tcagtaagagccttgtagagattaccggtaaaaccataccgagtgtcacttcctctgaaactgaggaatacctggtatttgaatccataggaaatggaag 26861482  T
Q  101 agga 104  Q
    ||||    
T  26861481 agga 26861478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 140
Target Start/End: Original strand, 27677841 - 27677969
Alignment:
Q  6 aagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaagaggat 105  Q
    |||||||||||||||||||||||| |||||||| ||||||||| | || || ||| | ||||| ||||||||  || |  ||||||||| ||||          
T  27677841 aagagccttgtagagattgccggtgaaaccgtaccgagtgtcacttcctctgaaattgaggaatacttggtatttgtactcataggaaattgaa------ 27677934  T
Q  106 gaggatgaggaaggtaattgcatagccatgagaat 140  Q
    | ||| ||||||||| |||||||||||||||||||    
T  27677935 gtggaagaggaaggtgattgcatagccatgagaat 27677969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 28325434 - 28325343
Alignment:
Q  13 ttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaagagga 104  Q
    ||||||||||| || |||||||| || ||||||||| | || ||||||||||||||||| |  || |||||| |||||||||| ||||||||    
T  28325434 ttgtagagatttccagtaaaaccataacgagtgtcactacctctaaaactaaggaacacgtcataggtgaatccataggaaaaggaagagga 28325343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 6 - 102
Target Start/End: Original strand, 28098596 - 28098692
Alignment:
Q  6 aagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaagag 102  Q
    |||||| ||||||||||| || |||||||| || |||||||| |||||||||||| |||| ||||| |  || |||||| |||| || |||||||||    
T  28098596 aagagctttgtagagatttccagtaaaaccataccgagtgtcggtgcccctaaaattaagaaacacgtcataggtgaatccataagagaatgaagag 28098692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 25071624 - 25071485
Alignment:
Q  1 tcagtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaag 100  Q
    |||| |||||| || || ||||| |||||||||||| |||||||||| || ||||| ||||||| |||||| |  ||  ||||  |||  || |  |  |    
T  25071624 tcagaaagagctttataaagattaccggtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacacgtcatagatgaaatcattagagagggtgg 25071525  T
Q  101 aggatgaggatgaggaaggtaattgcatagccatgagaat 140  Q
    ||||  ||||||| ||||||||||||||||||||||||||    
T  25071524 aggacaaggatgaagaaggtaattgcatagccatgagaat 25071485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 28226902 - 28226845
Alignment:
Q  14 tgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacac 71  Q
    |||||||||| || |||||||| || ||||||||| | || |||||||||||||||||    
T  28226902 tgtagagatttccagtaaaaccataacgagtgtcaatacctctaaaactaaggaacac 28226845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 28234514 - 28234429
Alignment:
Q  16 tagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaaga 101  Q
    ||||||||  |||||||||| || ||||||||| | || ||||||||||||||||| |  || |||||| ||||||| || |||||    
T  28234514 tagagattttcggtaaaaccatagcgagtgtcactacctctaaaactaaggaacacgtcataggtgaatccataggagaaagaaga 28234429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 28185314 - 28185222
Alignment:
Q  18 gagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaagaggatgagga 110  Q
    |||||| || |||||||  || ||||||||| | || ||||| ||||||||||| |  || |||||| ||||||| || ||||||||||||||    
T  28185314 gagatttccagtaaaacgataacgagtgtcactacctctaaagctaaggaacacgtcataggtgaatccataggagaaggaagaggatgagga 28185222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 13854 - 14069
Alignment:
Q  1 tcagtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaag 100  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||     
T  13854 tcagtaagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatgcagaggaaaatgaa- 13952  T
Q  101 aggatgaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttg 200  Q
         ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||    
T  13953 -----gaggaagaggaaggtaattgcatagccatgataattgagagaaattggatgaaaaaagagtttgagaattcagaatatgaatgagtttgtttttg 14047  T
Q  201 tggtctgtgatttggagtcttt 222  Q
    |||||||||||||  |||||||    
T  14048 tggtctgtgatttaaagtcttt 14069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 4893 - 5102
Alignment:
Q  1 tcagtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaag 100  Q
    ||||||||||||||||||||||| |||||||||||||  ||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||     
T  4893 tcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtcaatgcccctaaaactgaggaacacttggtaagtgaatccataggaaaatgaa- 4991  T
Q  101 aggatgaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatg-----aatgagtaagt 195  Q
         ||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||     ||||| |||||    
T  4992 -----gaggatgaggaaggtgattgtatagccataagaattgagagaaattggatgaaaaaagagtttgagaattcagaatatgaatttaatgaataagt 5086  T
Q  196 ttttgtggtctgtgat 211  Q
    ||||||||||||||||    
T  5087 ttttgtggtctgtgat 5102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 139 - 352
Alignment:
Q  1 tcagtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaag 100  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
T  139 tcagtaagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcatatgaaaatgaa- 237  T
Q  101 aggatgaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttg 200  Q
         ||||| |||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||       ||||||||||||||||||||||||    
T  238 -----gaggaagagggaggtgattgcatagccatgagaattgagagaaattagatgaaaaaagagtttg-------agaatatgaatgagtaagtttttg 325  T
Q  201 tggtctgtgatttggagtctttaatat 227  Q
    ||||||||||| |||||||||||||||    
T  326 tggtctgtgatgtggagtctttaatat 352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 7490 - 7277
Alignment:
Q  1 tcagtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaag 100  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7490 tcagtaagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcatatgaaaatgaag 7391  T
Q  101 aggatgaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttg 200  Q
          |||| |||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||       ||||||||||||||||||||||||    
T  7390 ------aggaagagggaggtgattgcatagccatgagaattgagagaaattagatgaaaaaagagtttg-------agaatatgaatgagtaagtttttg 7304  T
Q  201 tggtctgtgatttggagtctttaatat 227  Q
    ||||||||||| |||||||||||||||    
T  7303 tggtctgtgatgtggagtctttaatat 7277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 143; Significance: 4e-75; HSPs: 3)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 3644 - 3858
Alignment:
Q  1 tcagtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaag 100  Q
    ||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  3644 tcagtaagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatccataggaaaatgaa- 3742  T
Q  101 aggatgaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttg 200  Q
         ||||||||||||||| |||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  3743 -----gaggatgaggaaggtgattgtatagccatgacaattgagagaaataggatgaaaaaagagtttgagaatgcagaatatgaatg-gtaaatttttg 3836  T
Q  201 tggtctgtgatttggagtcttt 222  Q
    |||||||| || || |||||||    
T  3837 tggtctgttatgtgaagtcttt 3858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 14577 - 14790
Alignment:
Q  1 tcagtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaag 100  Q
    ||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||     
T  14577 tcagtaagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtgcccctaaaactgatgaacacttggtaagtgaatccataggaaaatgaa- 14675  T
Q  101 aggatgaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttg 200  Q
         | ||||||||||||| |||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||  |||||    
T  14676 -----gtggatgaggaaggtgattgtatagccatgagaattgagagaaataggatg-aaaaagagtttgagaatgcagaatatgaatgagtaa-attttg 14768  T
Q  201 tggtctgtgatttggagtcttt 222  Q
    || |||||||| || |||||||    
T  14769 tgttctgtgatgtgaagtcttt 14790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 40 - 222
Target Start/End: Original strand, 8062 - 8238
Alignment:
Q  40 cgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaagaggatgaggatgaggaaggtaattgcatagccatgagaa 139  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||| ||| ||||||||||      ||||||||||| |||| |||||||||||||    
T  8062 cgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccatgggagaatgaagagg------atgaggaaggtgattgtatagccatgagaa 8155  T
Q  140 ttgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtgatttggagtcttt 222  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||| || |||||||    
T  8156 ttgagagaaataggatgaaaaaagagtttgagaatgcagaatatgaatgagtgaatttttgtgttctgtgatgtgaagtcttt 8238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 18699609 - 18699821
Alignment:
Q  1 tcagtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaag 100  Q
    ||||||||||| |||||||||| ||| ||||||||||  ||||||||||||||||| || || |||||||||||||||||||||  ||||||||||||||    
T  18699609 tcagtaagagctttgtagagatggccagtaaaaccgtcacgagtgtcagtgcccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaag 18699708  T
Q  101 aggatgaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttg 200  Q
    |||      ||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||  |  ||||||||||    
T  18699709 agg------atgaggaaggtgattgcatagccatgagaattgagagaaactagatgaaaaaagagtttgagaatgcagaatatga--ggttaagtttttg 18699800  T
Q  201 tggtctgtgatttggagtctt 221  Q
    |||||||  || |||||||||    
T  18699801 tggtctgaaatgtggagtctt 18699821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 18655686 - 18655898
Alignment:
Q  1 tcagtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaag 100  Q
    ||||||||||| ||||||||||  || ||||||||||  ||||||||| ||||||| || || |||||||||||||||||||||  ||||||||||||||    
T  18655686 tcagtaagagctttgtagagatgcccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaag 18655785  T
Q  101 aggatgaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttg 200  Q
    |||      ||||||||||| ||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |  ||||||||||    
T  18655786 agg------atgaggaaggtgattgcctagccatgaaaattgagagaaactggatgaaaaaagagtttgagaatgcagaatatga--gtttaagtttttg 18655877  T
Q  201 tggtctgtgatttggagtctt 221  Q
    |||| |||||| |||||||||    
T  18655878 tggtatgtgatgtggagtctt 18655898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 18679776 - 18679978
Alignment:
Q  1 tcagtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaag 100  Q
    ||||||||||||||||||||||  || ||||||||||  ||||||||| ||||||| || || |||||||||||||||||||||  ||||||||||||||    
T  18679776 tcagtaagagccttgtagagatgaccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaag 18679875  T
Q  101 aggatgaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttg 200  Q
    || ||||      ||||||| ||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||  |  ||||||||||    
T  18679876 agaatga------ggaaggtgattgcatagccatgaaaatagagagaaactggatgaaaaaagagtttgagaatgcagaatatga--gtttaagtttttg 18679967  T
Q  201 tggtctgtgat 211  Q
    |||| ||||||    
T  18679968 tggtatgtgat 18679978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 18731713 - 18731915
Alignment:
Q  1 tcagtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaag 100  Q
    |||||||||||  ||||||||| ||| ||||||||||  ||||||||| ||||||| || || |||||||||||||||||||||  ||||||||||||||    
T  18731713 tcagtaagagctctgtagagatggccagtaaaaccgtcacgagtgtcactgcccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaag 18731812  T
Q  101 aggatgaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttg 200  Q
    |||      ||||||||||| ||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||  |  ||||||||||    
T  18731813 agg------atgaggaaggtgattgcatagccatgaaaatcgagagaaactggatgaaaaaagagtttgagaatgcagaatatga--gtttaagtttttg 18731904  T
Q  201 tggtctgtgat 211  Q
    |||| ||||||    
T  18731905 tggtatgtgat 18731915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 5 - 204
Target Start/End: Original strand, 17989263 - 17989454
Alignment:
Q  5 taagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaagagga 104  Q
    ||||||||||  ||||||||||||| |||||||| |||||||| |||||| || || | |||||||| | |||| |||||||||||||||||||||||||    
T  17989263 taagagccttcaagagattgccggtgaaaccgtaccgagtgtcggtgcccttacaaatgaggaacacatcgtaactgaatgcataggaaaatgaagagga 17989362  T
Q  105 tgaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggt 204  Q
         || || ||||||||||||| |||||||||||||||||||||  ||||| ||  |||||||||||||||||||||||||||| | |||||||||||    
T  17989363 -----at-agaaaggtaattgcatggccatgagaattgagagaaataagatgagaa--gagtttgagaatgcagaatatgaatgaggatgtttttgtggt 17989454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 5 - 204
Target Start/End: Complemental strand, 18073726 - 18073535
Alignment:
Q  5 taagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaagagga 104  Q
    ||||||||||  ||||||||||||| |||||||| |||||||| |||||| || || | |||||||| | |||| |||||||||||||||||||||||||    
T  18073726 taagagccttcaagagattgccggtgaaaccgtaccgagtgtcggtgcccttacaaatgaggaacacatcgtaactgaatgcataggaaaatgaagagga 18073627  T
Q  105 tgaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggt 204  Q
         || || ||||||||||||| |||||||||||||||||||||  ||||| ||  |||||||||||||||||||||||||||| | |||||||||||    
T  18073626 -----at-agaaaggtaattgcatggccatgagaattgagagaaataagatgagaa--gagtttgagaatgcagaatatgaatgaggatgtttttgtggt 18073535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 18724294 - 18724432
Alignment:
Q  1 tcagtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaag 100  Q
    ||||||||||||||||||||||  || ||||||||||  ||||||||| ||||||| || || |||||||||||||||||||||  |||||||||||||     
T  18724294 tcagtaagagccttgtagagatgaccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaa- 18724392  T
Q  101 aggatgaggatgaggaaggtaattgcatagccatgagaattgaga 145  Q
         ||||||||||||||| ||||||||||||||||||||||||    
T  18724393 -----gaggatgaggaaggtgattgcatagccatgagaattgaga 18724432  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 5091191 - 5091240
Alignment:
Q  16 tagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaag 65  Q
    |||||||| || ||||||||||| |||||||| ||||| |||||||||||    
T  5091191 tagagatttccagtaaaaccgtaacgagtgtcggtgcctctaaaactaag 5091240  T

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Target: scaffold0003 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 5 - 204
Target Start/End: Complemental strand, 59534 - 59343
Alignment:
Q  5 taagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaagagga 104  Q
    ||||||||||  ||||||||||||| |||||||| |||||||| |||||| || || | |||||||| | |||| |||||||||||||||||||||||||    
T  59534 taagagccttcaagagattgccggtgaaaccgtaccgagtgtcggtgcccttacaaatgaggaacacatcgtaactgaatgcataggaaaatgaagagga 59435  T
Q  105 tgaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggt 204  Q
         || || ||||||||||||| |||||||||||||||||||||  ||||| ||  |||||||||||||||||||||||||||| | |||||||||||    
T  59434 -----at-agaaaggtaattgcatggccatgagaattgagagaaataagatgagaa--gagtttgagaatgcagaatatgaatgaggatgtttttgtggt 59343  T

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Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 169
Target Start/End: Original strand, 28164580 - 28164733
Alignment:
Q  10 gccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaagaggatgagg 109  Q
    ||||| ||||||| ||| || |||||||  ||||||||| ||||||||||||| |||||||||||||| |||||| ||||||||| ||||      ||||    
T  28164580 gccttatagagatggccagtgaaaccgtcacgagtgtcactgcccctaaaactgaggaacacttggtatgtgaatccataggaaattgaa------gagg 28164673  T
Q  110 atgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttg 169  Q
    | |||||| |  || | ||||||||||||||||| ||||||||||||| |||||||||||    
T  28164674 aagaggaatgcgatcgtatagccatgagaattgacagaaattggatgagaaaagagtttg 28164733  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 166
Target Start/End: Original strand, 28127898 - 28128042
Alignment:
Q  10 gccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaagaggatgagg 109  Q
    ||||||||||||| ||| || |||||||  ||||||||| ||||||| || || |||||||||||||| |||||| ||||||||| ||||              
T  28127898 gccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaacacttggtatgtgaatccataggaaattgaa---------- 28127987  T
Q  110 atgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagt 166  Q
      |||||| || |||||||||||||||||||||| | ||||||||||| ||||||||    
T  28127988 --gaggaatgtgattgcatagccatgagaattgacaaaaattggatgagaaaagagt 28128042  T

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Target: scaffold0038 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 116749 - 116658
Alignment:
Q  13 ttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaagagga 104  Q
    ||||||||||| || |||||||| || ||||||||| | || ||||||||||||||||| |  || |||||| |||||||||| ||||||||    
T  116749 ttgtagagatttccagtaaaaccataacgagtgtcactacctctaaaactaaggaacacgtcataggtgaatccataggaaaaggaagagga 116658  T

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Target: scaffold0038; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 27400 - 27343
Alignment:
Q  14 tgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacac 71  Q
    |||||||||| || |||||||| || ||||||||| | || |||||||||||||||||    
T  27400 tgtagagatttccagtaaaaccataacgagtgtcaatacctctaaaactaaggaacac 27343  T

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Target: scaffold0038; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 34675 - 34590
Alignment:
Q  16 tagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaaga 101  Q
    ||||||||  |||||||||| || ||||||||| | || ||||||||||||||||| |  || |||||| ||||||| || |||||    
T  34675 tagagattttcggtaaaaccatagcgagtgtcactacctctaaaactaaggaacacgtcataggtgaatccataggagaaagaaga 34590  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 29273992 - 29274123
Alignment:
Q  1 tcagtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaag 100  Q
    |||||||||| ||||||||||| |||  |||||||||  |||||||||  ||| |||||  | ||||| || |||||||||||| |||| || | ||||     
T  29273992 tcagtaagagtcttgtagagatggccaataaaaccgtcacgagtgtcaccgcctctaaagttgaggaagacctggtaagtgaatccatatgagattgaa- 29274090  T
Q  101 aggatgaggatgaggaaggtaattgcatagccatgaga 138  Q
         ||||| ||||||||| |||||||||||||||||    
T  29274091 -----gaggaagaggaaggtgattgcatagccatgaga 29274123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 58517 - 58607
Alignment:
Q  14 tgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaagagga 104  Q
    |||||||||| || |||||||| || |||||||||   || ||||| ||||||||||| || || |||||| ||||||| || ||||||||    
T  58517 tgtagagatttccagtaaaaccatagcgagtgtcacaacctctaaagctaaggaacacgtgataggtgaatccataggagaaggaagagga 58607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 3279638 - 3279592
Alignment:
Q  16 tagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaact 62  Q
    |||||||| || |||||||| || |||||||||||||||||||||||    
T  3279638 tagagatttccagtaaaaccatagcgagtgtcagtgcccctaaaact 3279592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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