View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14483_high_42 (Length: 284)
Name: NF14483_high_42
Description: NF14483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14483_high_42 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 7023867 - 7023610
Alignment:
| Q |
1 |
aaaagtaacccattaagaatgtgaacttgtattcactttcccacaaa-ttcatattaaaagccttacactaactcaaaaccaatcaggccattttcaaat |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7023867 |
aaaagtaacccattaagaatgtgaacttgtattcactttcccacaaaattcatattaaaagccttacattaactcaaaaccaatcaggccattttcaaat |
7023768 |
T |
|
| Q |
100 |
taccaaacaagaacaacatcatgaaatcaataaaataggaagtcaatccttatgtcaaaatcttaaaaaatttagagggaaaatgttgcacatcaaacag |
199 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7023767 |
tatcaaacaagaacaacatcatgaaatcaataaaataggaagtcaattcttatgtcaaaatcttaaaaaatttagagggaaaatgttgcacatcaaacag |
7023668 |
T |
|
| Q |
200 |
aaaacagaagcagacaccagtaaaaaggaaataggaatcaagaaattagtgagacttt |
257 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7023667 |
aaaacagaagcagacaccagtaaaaaggaaataggaatcaagaaattagtgagacttt |
7023610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 25103811 - 25103761
Alignment:
| Q |
126 |
tcaataaaataggaagtcaatccttatgtcaaaatcttaaaaaatttagag |
176 |
Q |
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|||| ||||||| ||||||||||||||||||| ||||| |||| ||||||| |
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| T |
25103811 |
tcaagaaaatagaaagtcaatccttatgtcaacatctttaaaattttagag |
25103761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 25162904 - 25162854
Alignment:
| Q |
126 |
tcaataaaataggaagtcaatccttatgtcaaaatcttaaaaaatttagag |
176 |
Q |
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|||| ||||||| ||||||||||||||||||| ||||| |||| ||||||| |
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|
| T |
25162904 |
tcaagaaaatagaaagtcaatccttatgtcaacatctttaaaattttagag |
25162854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 122 - 255
Target Start/End: Complemental strand, 26889983 - 26889851
Alignment:
| Q |
122 |
gaaatcaataaaataggaagtcaatccttatgtcaaaatcttaaaaaatttagagggaaaatgttgcacatcaaacagaaaacagaagcagacaccagta |
221 |
Q |
| |
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|||||||||||||| ||||| ||||||||||||||| ||| | |||||||||| ||||||||||||||||||||||||||| ||||||| || | || |
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| T |
26889983 |
gaaatcaataaaatcggaagccaatccttatgtcaacatcattcaaaatttagattcaaaatgttgcacatcaaacagaaaaca-aagcagaaactaata |
26889885 |
T |
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| Q |
222 |
aaaaggaaataggaatcaagaaattagtgagact |
255 |
Q |
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||||||||||||||||||||| |||| |||||| |
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|
| T |
26889884 |
taaaggaaataggaatcaagaagttagcgagact |
26889851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 125 - 255
Target Start/End: Original strand, 45491727 - 45491857
Alignment:
| Q |
125 |
atcaataaaataggaagtcaatccttatgtcaaaatcttaaaaaatttagagggaaaatgttgcacatcaaacagaaaacagaagcagacaccagtaaaa |
224 |
Q |
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||||| ||||||||||| | ||||||| |||| |||| | ||||||||||| ||||||||||||||||||||||||| | ||| ||| | || ||||| |
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| T |
45491727 |
atcaagaaaataggaagccggtccttatttcaatgtctttacaaatttagaggaaaaatgttgcacatcaaacagaaaataaaagtagatatcaataaaa |
45491826 |
T |
|
| Q |
225 |
aggaaataggaatcaagaaattagtgagact |
255 |
Q |
| |
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||| ||||||||||||||||||||||||||| |
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| T |
45491827 |
aggcaataggaatcaagaaattagtgagact |
45491857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 125 - 255
Target Start/End: Original strand, 14286588 - 14286718
Alignment:
| Q |
125 |
atcaataaaataggaagtcaatccttatgtcaaaatcttaaaaaatttagagggaaaatgttgcacatcaaacagaaaacagaagcagacaccagtaaaa |
224 |
Q |
| |
|
||||| ||||||||||| | ||||||| |||| |||| | ||||||||||| ||||||||||| ||||||||||||| | ||||||| | || ||||| |
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| T |
14286588 |
atcaagaaaataggaagccggtccttatttcaacgtctttacaaatttagaggaaaaatgttgcagatcaaacagaaaataaaagcagatatcaataaaa |
14286687 |
T |
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| Q |
225 |
aggaaataggaatcaagaaattagtgagact |
255 |
Q |
| |
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||| |||||||||||||||||||| |||||| |
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|
| T |
14286688 |
aggcaataggaatcaagaaattagcgagact |
14286718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 203
Target Start/End: Complemental strand, 7179454 - 7179388
Alignment:
| Q |
137 |
ggaagtcaatccttatgtcaaaatcttaaaaaatttagagggaaaatgttgcacatcaaacagaaaa |
203 |
Q |
| |
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||||| ||||||||||||||| || || |||| ||||||| || |||||||||| ||||||||||| |
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|
| T |
7179454 |
ggaagccaatccttatgtcaacatgtttaaaaccttagaggaaatatgttgcacaccaaacagaaaa |
7179388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 8679163 - 8679216
Alignment:
| Q |
88 |
ccattttcaaattaccaaacaagaacaacatcatgaaatcaataaaataggaag |
141 |
Q |
| |
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||||||||| |||||||| ||| |||||||| |||||||||||||||||||| |
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| T |
8679163 |
ccattttcacgttaccaaataagtgcaacatcaagaaatcaataaaataggaag |
8679216 |
T |
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