View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14483_high_48 (Length: 250)
Name: NF14483_high_48
Description: NF14483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14483_high_48 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 33923378 - 33923614
Alignment:
| Q |
1 |
tttacattaattttttcacatatttaaatatattattgtataatataattaaaataacttgtcgtataaagtcgtagtctttaaattatgcagtttaaaa |
100 |
Q |
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| T |
33923378 |
tttacattaattttttcacatatttaaatatattattgtataatataattaaaataacttgtcatataaagtcgtagtctttaaattatgcagtttaaaa |
33923477 |
T |
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| Q |
101 |
aatactcaaggagctgctattcaattcatatataggtgctcggggttgtgaaaatagagctggaaatcaatttgttacacttgctcaagaccctacgtga |
200 |
Q |
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| T |
33923478 |
aatactcaaggagctgctattcaattcatatataggtgctcggggttgtgaaaata-tcctggaaatcaatttgttacacttgctcaagaccctacgtga |
33923576 |
T |
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| Q |
201 |
taacgacaacctctcttacacacatttctctccatatt |
238 |
Q |
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| T |
33923577 |
taacgacatcctctcttacacacatttctctccatatt |
33923614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 35070926 - 35070846
Alignment:
| Q |
1 |
tttacattaattttttcacatatttaaatatattattgtataatataattaaaataacttgtcgtataaagtcgtagtcttta |
83 |
Q |
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| T |
35070926 |
tttacattaaatttt--acatatttaaatatattattgtatagtataattaaaataagtcattgtaaaaagtcgtggtcttta |
35070846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 41381423 - 41381374
Alignment:
| Q |
19 |
catatttaaatatattattgtataatataattaaaataacttgtcgtata |
68 |
Q |
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| T |
41381423 |
catatttaaatatattattacaaaatataattaaaataagttgtcatata |
41381374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 45339255 - 45339202
Alignment:
| Q |
3 |
tacattaattttttcacatatttaaatatattattgtataatataattaaaata |
56 |
Q |
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|||||||||||||| ||||||||||||||||||| || | ||||||| ||||| |
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| T |
45339255 |
tacattaatttttttgcatatttaaatatattattataaactataattgaaata |
45339202 |
T |
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