View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14483_high_51 (Length: 247)

Name: NF14483_high_51
Description: NF14483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14483_high_51
NF14483_high_51
[»] chr1 (1 HSPs)
chr1 (16-232)||(34407195-34407389)
[»] chr4 (2 HSPs)
chr4 (50-232)||(861960-862142)
chr4 (52-175)||(47651165-47651288)
[»] chr3 (3 HSPs)
chr3 (54-228)||(37043375-37043550)
chr3 (100-232)||(20614785-20614917)
chr3 (103-215)||(7938456-7938569)
[»] chr5 (2 HSPs)
chr5 (54-225)||(5013596-5013767)
chr5 (104-225)||(24255104-24255225)
[»] chr6 (2 HSPs)
chr6 (54-228)||(16317598-16317773)
chr6 (94-205)||(2694536-2694649)
[»] chr2 (1 HSPs)
chr2 (140-232)||(37535197-37535289)


Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 34407195 - 34407389
Alignment:
Q  16 tgataaatgttctaatcaaagacgtgtctattataaaagaaaaatgttatttcaagcgaaatagaattatcccgagaatttcaagacacatgtgacttgt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  34407195 tgataaatgttctaatcaaagacgtgtctattataaaagaaaaatgttatttcaagcgaaataaaattatcccgagaatttcaagacacatgtggcttgt 34407294  T
Q  116 atgccacccatccactagtttatgattttcatctttttctccccacctcccatgatttcctctcacaactgctttttattggcttattttcattcttgat 215  Q
    |||||||||||||||||||||                      |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  34407295 atgccacccatccactagttt----------------------cacctcccatgatttcctctcacagctgctttttattggcttattttcattcttgat 34407372  T

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Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 50 - 232
Target Start/End: Complemental strand, 862142 - 861960
Alignment:
Q  50 aaaagaaaaatgttatttcaagcgaaatagaattatcccgagaatttcaagacacatgtgacttgtatgccacccatccactagtttatgattttcatct 149  Q
    ||||| |||||| ||||||||||||||||| | ||||||||| |||||| | |||||||| | |||||| ||| |||||||||||||||||||| |||||    
T  862142 aaaaggaaaatgctatttcaagcgaaatagcactatcccgagtatttcacggcacatgtggcatgtatgtcactcatccactagtttatgatttccatct 862043  T
Q  150 ttttctccccacctcccatgatttcctctcacaactgctttttattggcttattttcattcttgatggattcgggacaatact 232  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||| ||||||||| ||||||    
T  862042 ttttctccccacctcccatgatttccgctcacagctgctttttattggcttgttttcattcttgattgattcgggataatact 861960  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 52 - 175
Target Start/End: Complemental strand, 47651288 - 47651165
Alignment:
Q  52 aagaaaaatgttatttcaagcgaaatagaattatcccgagaatttcaagacacatgtgacttgtatgccacccatccactagtttatgattttcatcttt 151  Q
    |||||||||| ||||| ||| ||||||| | |||| |||   ||||| |||||||||| | |||||| || |||||||||| ||||||||||||||||||    
T  47651288 aagaaaaatgatatttaaagtgaaatagtaatatctcgaatttttcacgacacatgtggcatgtatgtcatccatccactattttatgattttcatcttt 47651189  T
Q  152 ttctccccacctcccatgatttcc 175  Q
    |||||||  |||||||||||||||    
T  47651188 ttctcccttcctcccatgatttcc 47651165  T

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Target: chr3 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 54 - 228
Target Start/End: Complemental strand, 37043550 - 37043375
Alignment:
Q  54 gaaaaatgttatttcaagcgaaatagaattatcccgagaatttcaagacacatgtgacttgtatgccacccatccactagtttatgattttcatcttttt 153  Q
    |||||||| |||||||  ||||||| || | |||||||| |||| ||||||||||| | ||||||||| ||||||| ||||||||||||| |||||||||    
T  37043550 gaaaaatgctatttcacacgaaataaaactgtcccgagattttccagacacatgtggcatgtatgccatccatccattagtttatgatttccatcttttt 37043451  T
Q  154 ct-ccccacctcccatgatttcctctcacaactgctttttattggcttattttcattcttgatggattcgggacaa 228  Q
    || |||||||||||||||||||| || ||| ||| |||| |||||||||||||||||||||||| |||||||||||    
T  37043450 ctcccccacctcccatgatttccactaacagctgtttttaattggcttattttcattcttgatgcattcgggacaa 37043375  T

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Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 100 - 232
Target Start/End: Complemental strand, 20614917 - 20614785
Alignment:
Q  100 gacacatgtgacttgtatgccacccatccactagtttatgattttcatctttttctccccacctcccatgatttcctctcacaactgctttttattggct 199  Q
    |||||||||| | |||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||    
T  20614917 gacacatgtggcatgtatttcacccatccactagtttatgatttccatctttttctccccacctcccatgatttccgctcacatctgctttttattgact 20614818  T
Q  200 tattttcattcttgatggattcgggacaatact 232  Q
    | |||| ||||||||| ||||||||| ||||||    
T  20614817 tgtttttattcttgatagattcgggataatact 20614785  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 215
Target Start/End: Original strand, 7938456 - 7938569
Alignment:
Q  103 acatgtgacttgtatgccacccatccactagtttatgattttc-atctttttctccccacctcccatgatttcctctcacaactgctttttattggctta 201  Q
    ||||||| | |||||||||| ||||||||| |||| ||||||| || |||||||||| |||||||  ||| ||| |||| | ||| |||| ||||||||     
T  7938456 acatgtggcatgtatgccactcatccactattttaggattttccatatttttctcccaacctcccccgatatccgctcaaagctgattttgattggcttg 7938555  T
Q  202 ttttcattcttgat 215  Q
    | ||||||||||||    
T  7938556 tattcattcttgat 7938569  T

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Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 54 - 225
Target Start/End: Complemental strand, 5013767 - 5013596
Alignment:
Q  54 gaaaaatgttatttcaagcgaaatagaattatcccgagaatttcaagacacatgtgacttgtatgccacccatccactagtttatgattttcatcttttt 153  Q
    |||||||| ||||| ||||||||||  | |||||| |  ||||||  ||||||||| | |||||||||| ||||||||||| |||||||| || ||||||    
T  5013767 gaaaaatgctatttaaagcgaaataacactatcccaaatatttcaccacacatgtggcatgtatgccactcatccactagtctatgatttccaccttttt 5013668  T
Q  154 ctccccacctcccatgatttcctctcacaactgctttttattggcttattttcattcttgatggattcggga 225  Q
    |||||||||||||||||||||| |||| ||||||||| ||||||||| ||||||||| |||| || ||||||    
T  5013667 ctccccacctcccatgatttccgctcaaaactgctttctattggcttgttttcattcgtgatcgagtcggga 5013596  T

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Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 104 - 225
Target Start/End: Complemental strand, 24255225 - 24255104
Alignment:
Q  104 catgtgacttgtatgccacccatccactagtttatgattttcatctttttctccccacctcccatgatttcctctcacaactgctttttattggcttatt 203  Q
    |||||| | |||||||||| | |||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||| |||||||||||||| ||    
T  24255225 catgtggcatgtatgccactcgtccactagtttatgatttccatctttttctctccacctcccatgatttcctctcaaaactactttttattggcttgtt 24255126  T
Q  204 ttcattcttgatggattcggga 225  Q
    ||||||| |||| || ||||||    
T  24255125 ttcattcgtgattgagtcggga 24255104  T

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Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 54 - 228
Target Start/End: Complemental strand, 16317773 - 16317598
Alignment:
Q  54 gaaaaatgttatttcaagcgaaatagaattatcccgagaatttcaagacacatgtgacttgtatgccacccatccactagtttatgattttcatcttttt 153  Q
    ||||||||||||||||  ||||||| || | ||| |||| |||| ||||||||||| | ||||||||| ||||||| ||| ||||||||| ||||||| |    
T  16317773 gaaaaatgttatttcacacgaaataaaactgtcctgagattttccagacacatgtggcatgtatgccatccatccattagattatgatttccatctttct 16317674  T
Q  154 ct-ccccacctcccatgatttcctctcacaactgctttttattggcttattttcattcttgatggattcgggacaa 228  Q
    || |||||||||||||||||||| || ||| ||| |||| ||||| |||||||||||||||||| |||| ||||||    
T  16317673 ctcccccacctcccatgatttccgctgacagctgtttttaattggtttattttcattcttgatgcattcaggacaa 16317598  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 205
Target Start/End: Complemental strand, 2694649 - 2694536
Alignment:
Q  94 tttcaagacacatgtgacttgtatgccacccatccactagtttatgattttcatctttttct-ccccacctcccatgatttcctctc-acaactgctttt 191  Q
    |||||||||||||||| | ||||||||||||||||||   |||||||||| |||| |||||| ||||||||||||||||||||  || | || |||||||    
T  2694649 tttcaagacacatgtggcatgtatgccacccatccacagttttatgatttccatcattttctcccccacctcccatgatttccgttcaaaaattgctttt 2694550  T
Q  192 tattggcttatttt 205  Q
    ||||||| ||||||    
T  2694549 tattggcctatttt 2694536  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 232
Target Start/End: Complemental strand, 37535289 - 37535197
Alignment:
Q  140 attttcatctttttctccccacctcccatgatttcctctcacaactgctttttattggcttattttcattcttgatggattcgggacaatact 232  Q
    |||| ||| ||||||||| ||| | |||| |||||| || |||  || |||| |||||||| |||||||||||||||||||||| | ||||||    
T  37535289 atttccatatttttctcctcactttccataatttccgctaacagatgtttttgattggcttgttttcattcttgatggattcggtataatact 37535197  T

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