View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14483_high_55 (Length: 238)

Name: NF14483_high_55
Description: NF14483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14483_high_55
NF14483_high_55
[»] chr2 (4 HSPs)
chr2 (1-223)||(16232169-16232391)
chr2 (1-191)||(34690828-34691018)
chr2 (1-191)||(34713240-34713430)
chr2 (1-36)||(33860823-33860858)
[»] chr1 (12 HSPs)
chr1 (1-187)||(38137971-38138158)
chr1 (1-191)||(43044982-43045170)
chr1 (1-191)||(45983813-45983994)
chr1 (1-140)||(3300716-3300855)
chr1 (1-140)||(43066870-43067009)
chr1 (1-140)||(43083826-43083965)
chr1 (106-185)||(40034809-40034886)
chr1 (1-37)||(43076828-43076864)
chr1 (71-138)||(7888848-7888915)
chr1 (85-138)||(7891113-7891166)
chr1 (157-193)||(43066782-43066818)
chr1 (157-193)||(43084017-43084053)
[»] chr8 (3 HSPs)
chr8 (111-191)||(4297574-4297654)
chr8 (1-194)||(4619671-4619861)
chr8 (85-138)||(1846555-1846608)
[»] chr4 (1 HSPs)
chr4 (1-37)||(4231447-4231483)
[»] chr5 (1 HSPs)
chr5 (1-33)||(16349129-16349161)


Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 16232169 - 16232391
Alignment:
Q  1 tatctcccttaaaaccagagatgggaacaaatggaatatcatcagtgtcataaccaatcctcatcaaaccgggtgaaactcccttcacaattacttcata 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  16232169 tatctcacttaaaaccagagatgggaacaaatggaatatcatcagcgttataaccaatcctcgtcaaagcgggtgaaactcccttcacaattacttcata 16232268  T
Q  101 tctgtccttagagtatttcggtgtagtggcatccatctgtgaagatagatgttaataattattacttatataaatgaattataaaaataataatcagatg 200  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16232269 tctgtccttggagtatttcggtgtagtggcattcatctgtgaagatagatgttaataattattacttatataaatgaattataaaaataataatcagatg 16232368  T
Q  201 ctgaaaatgtcaataccttgttg 223  Q
    |||||||||||||||||||||||    
T  16232369 ctgaaaatgtcaataccttgttg 16232391  T

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Target: chr2; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 34690828 - 34691018
Alignment:
Q  1 tatctcccttaaaaccagagatgggaacaaatggaatatcatcagtgtcataaccaatcctcatcaaaccgggtgaaactcccttcacaattacttcata 100  Q
    ||||||||||| ||||||||||||||||||||||||| | ||| |||| ||||||||||||||||||| ||||||||| |||||||||||||| ||||||    
T  34690828 tatctcccttataaccagagatgggaacaaatggaattttatctgtgttataaccaatcctcatcaaagcgggtgaaattcccttcacaattagttcata 34690927  T
Q  101 tctgtccttagagtatttcggtgtagtggcatccatctgtgaagatagatgttaataattattacttatataaatgaattataaaaataat 191  Q
     || ||||| |||||||| |||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  34690928 cctatccttggagtatttgggtgtaatggcatccatctgcgaagatagatgttaataattaatacttatataaatgaattataaaaataat 34691018  T

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Target: chr2; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 34713240 - 34713430
Alignment:
Q  1 tatctcccttaaaaccagagatgggaacaaatggaatatcatcagtgtcataaccaatcctcatcaaaccgggtgaaactcccttcacaattacttcata 100  Q
    ||||||||||| ||||||||||||||||||||||||| | ||| |||| ||||||||||||||||||| ||||||||| |||||||||||||| ||||||    
T  34713240 tatctcccttataaccagagatgggaacaaatggaattttatctgtgttataaccaatcctcatcaaagcgggtgaaattcccttcacaattagttcata 34713339  T
Q  101 tctgtccttagagtatttcggtgtagtggcatccatctgtgaagatagatgttaataattattacttatataaatgaattataaaaataat 191  Q
     || ||||| |||||||| |||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  34713340 cctatccttggagtatttgggtgtaatggcatccatctgcgaagatagatgttaataattaatacttatataaatgaattataaaaataat 34713430  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 33860823 - 33860858
Alignment:
Q  1 tatctcccttaaaaccagagatgggaacaaatggaa 36  Q
    ||||||||| ||||||||||||||||||||||||||    
T  33860823 tatctccctcaaaaccagagatgggaacaaatggaa 33860858  T

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Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 38138158 - 38137971
Alignment:
Q  1 tatctcccttaaaaccagagatgggaacaaatggaatatcatcagtgtcataaccaatcctca-tcaaaccgggtgaaactcccttcacaattacttcat 99  Q
    ||||||||| ||||||||||||||||||||||||||| |||||   || ||| |||| | ||| |||||  |||||||| | ||||||||||| ||||||    
T  38138158 tatctccctcaaaaccagagatgggaacaaatggaatttcatctaggttatagccaa-catcaatcaaaaagggtgaaaattccttcacaatttcttcat 38138060  T
Q  100 atctgtccttagagtatttcggtgtagtggcatccatctgtgaagatagat-gttaataattattacttatataaatgaattataaaaa 187  Q
    | || ||||| |||||||| ||||||||||||||||||||| || |||||| |   | ||||| |||||||| ||||||| ||||||||    
T  38138059 acctatccttggagtatttgggtgtagtggcatccatctgtcaatatagatagcacacaattagtacttatacaaatgaaatataaaaa 38137971  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 43044982 - 43045170
Alignment:
Q  1 tatctcccttaaaaccagagatgggaacaaatggaatatcatcagtgtcataaccaatcctcatcaaaccgggtgaaactcccttcacaattacttcata 100  Q
    ||||||||| ||||||||||||||||||||||||||| |  || | || ||| |||| | || |||||  || ||||||| ||||||||||| | |||||    
T  43044982 tatctccctcaaaaccagagatgggaacaaatggaattttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcatcata 43045081  T
Q  101 tctgtccttagagtatttcggtgtagtggcatccatctg-tgaagatagatgttaataattattacttatataaatgaattataaaaataat 191  Q
    |||  |||| ||||| || |||||||| ||||||||||| | ||||||||||     ||||| |||||| ||||||||||||||||||||||    
T  43045082 tctacccttggagtacttgggtgtagtagcatccatctgttcaagatagatg---caaattagtacttaaataaatgaattataaaaataat 43045170  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 45983994 - 45983813
Alignment:
Q  1 tatctcccttaaaaccagagatgggaacaaatggaatatcatcagtgtcataaccaatcctcatcaaaccgggtgaaactcccttcacaattacttcata 100  Q
    ||||||||| |||||||||||||||||||| |||||||     ||| | ||| |||| | |  |||||| |||| |||||  | |||||||| || ||||    
T  45983994 tatctccctcaaaaccagagatgggaacaattggaata-----agttt-atagccaaccttattcaaacagggtaaaacttgcctcacaatttctacata 45983901  T
Q  101 tctgtccttagagtatttcggtgtagtggcatccatctgtgaagatagatgttaataattattacttatataaatgaattataaaaataat 191  Q
     || ||| |||||||||| |||||||||||||||||||||   | ||||||   ||||||| |||||||||||||||||||||||||||||    
T  45983900 cctatccctagagtatttaggtgtagtggcatccatctgtcggggtagatg---ataattagtacttatataaatgaattataaaaataat 45983813  T

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Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 3300716 - 3300855
Alignment:
Q  1 tatctcccttaaaaccagagatgggaacaaatggaatatcatcagtgtcataaccaatcctcatcaaaccgggtgaaactcccttcacaattacttcata 100  Q
    ||||||||| ||||||||||||||||||||||||||| |  || | || ||| |||| | || |||||  || ||||||| ||||||||||| |||||||    
T  3300716 tatctccctcaaaaccagagatgggaacaaatggaattttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcttcata 3300815  T
Q  101 tctgtccttagagtatttcggtgtagtggcatccatctgt 140  Q
     ||  |||| ||||| || |||||||||||||||||||||    
T  3300816 cctacccttcgagtacttaggtgtagtggcatccatctgt 3300855  T

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Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 43067009 - 43066870
Alignment:
Q  1 tatctcccttaaaaccagagatgggaacaaatggaatatcatcagtgtcataaccaatcctcatcaaaccgggtgaaactcccttcacaattacttcata 100  Q
    ||||||||| ||||||||||||||||||||||||||| |  || | || ||| |||| | || |||||  || ||||||| ||||||||||| | |||||    
T  43067009 tatctccctcaaaaccagagatgggaacaaatggaattttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcatcata 43066910  T
Q  101 tctgtccttagagtatttcggtgtagtggcatccatctgt 140  Q
    |||  |||| ||||| || |||||||| ||||||||||||    
T  43066909 tctacccttggagtacttgggtgtagtagcatccatctgt 43066870  T

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Target: chr1; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 43083826 - 43083965
Alignment:
Q  1 tatctcccttaaaaccagagatgggaacaaatggaatatcatcagtgtcataaccaatcctcatcaaaccgggtgaaactcccttcacaattacttcata 100  Q
    ||||||||| ||||||||||||||||||||||||||| |  || | || ||| |||| | || |||||  || ||||||| ||||||||||| | |||||    
T  43083826 tatctccctcaaaaccagagatgggaacaaatggaattttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcatcata 43083925  T
Q  101 tctgtccttagagtatttcggtgtagtggcatccatctgt 140  Q
    |||  |||| ||||| || |||||||| ||||||||||||    
T  43083926 tctacccttggagtacttgggtgtagtagcatccatctgt 43083965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 185
Target Start/End: Complemental strand, 40034886 - 40034809
Alignment:
Q  106 ccttagagtatttcggtgtagtggcatccatctgtgaagatagatgttaataattattactt-atataaatgaattataaa 185  Q
    ||||||||||||| |||||||| |||||||||||| ||||||||||   ||||||| ||||| ||||||||||| ||||||    
T  40034886 ccttagagtatttgggtgtagttgcatccatctgtcaagatagatg---ataattagtacttaatataaatgaactataaa 40034809  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 43076864 - 43076828
Alignment:
Q  1 tatctcccttaaaaccagagatgggaacaaatggaat 37  Q
    ||||||||| |||||||||||||||||||||||||||    
T  43076864 tatctccctcaaaaccagagatgggaacaaatggaat 43076828  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 7888915 - 7888848
Alignment:
Q  71 gggtgaaactcccttcacaattacttcatatctgtccttagagtatttcggtgtagtggcatccatct 138  Q
    ||||||||||   ||||||||| ||||||| |||||||  |||||| | |||||||||||||||||||    
T  7888915 gggtgaaacttgattcacaatttcttcatacctgtcctaggagtatatgggtgtagtggcatccatct 7888848  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 138
Target Start/End: Complemental strand, 7891166 - 7891113
Alignment:
Q  85 tcacaattacttcatatctgtccttagagtatttcggtgtagtggcatccatct 138  Q
    ||||||||  |||||| || ||||| |||||||| |||||||||||||||||||    
T  7891166 tcacaatttgttcatacctatccttggagtatttgggtgtagtggcatccatct 7891113  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 43066818 - 43066782
Alignment:
Q  157 aattattacttatataaatgaattataaaaataataa 193  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  43066818 aattagtacttaaataaatgaattataaaaataataa 43066782  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 43084017 - 43084053
Alignment:
Q  157 aattattacttatataaatgaattataaaaataataa 193  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  43084017 aattagtacttaaataaatgaattataaaaataataa 43084053  T

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Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 111 - 191
Target Start/End: Original strand, 4297574 - 4297654
Alignment:
Q  111 gagtatttcggtgtagtggcatccatctgtgaagatagatgttaataattattacttatataaatgaattataaaaataat 191  Q
    |||||||| |||||||||||||||||||||||||||||||| | ||||||| || ||||| ||||||||||||||||||||    
T  4297574 gagtatttgggtgtagtggcatccatctgtgaagatagatgatgataattagtatttatacaaatgaattataaaaataat 4297654  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 4619671 - 4619861
Alignment:
Q  1 tatctcccttaaaaccagagatgggaacaaatggaatatcatcagtgtcataaccaatcctcatcaaaccgggtgaaactcccttcacaattacttcata 100  Q
    ||||||||| ||||||||||||||||||||||| ||| |  | || || ||| |||||||||  ||||  | ||||||  || ||||||| | |||||||    
T  4619671 tatctccctcaaaaccagagatgggaacaaatgtaatttttttagggttatagccaatcctctccaaaaagtgtgaaaaacctttcacaaattcttcata 4619770  T
Q  101 tctgtccttagagtatttcggtgtagtggcatccatctgtgaagatagatgttaataattattacttatataaatgaattataaaaataataat 194  Q
     || | ||| |||||||| |||| |||||||||||||| | ||||||||||   | ||||| || |||||||||||||| ||||||||||||||    
T  4619771 cctatacttggagtatttgggtgcagtggcatccatctatcaagatagatg---aaaattagtaattatataaatgaataataaaaataataat 4619861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 1846555 - 1846608
Alignment:
Q  85 tcacaattacttcatatctgtccttagagtatttcggtgtagtggcatccatct 138  Q
    ||||||||  |||||| || ||||| |||||||| |||||||||||||||||||    
T  1846555 tcacaatttgttcatacctatccttggagtatttgggtgtagtggcatccatct 1846608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 4231447 - 4231483
Alignment:
Q  1 tatctcccttaaaaccagagatgggaacaaatggaat 37  Q
    ||||||||| |||||||||||||||||||||||||||    
T  4231447 tatctccctcaaaaccagagatgggaacaaatggaat 4231483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 16349129 - 16349161
Alignment:
Q  1 tatctcccttaaaaccagagatgggaacaaatg 33  Q
    ||||||||| |||||||||||||||||||||||    
T  16349129 tatctccctcaaaaccagagatgggaacaaatg 16349161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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