View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14483_high_56 (Length: 238)

Name: NF14483_high_56
Description: NF14483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14483_high_56
NF14483_high_56
[»] chr8 (5 HSPs)
chr8 (77-222)||(37543649-37543794)
chr8 (1-60)||(37543846-37543905)
chr8 (1-55)||(12106926-12106980)
chr8 (1-55)||(23625136-23625190)
chr8 (1-55)||(25149297-25149351)
[»] chr4 (2 HSPs)
chr4 (1-55)||(2634083-2634137)
chr4 (1-55)||(5448362-5448416)
[»] chr3 (6 HSPs)
chr3 (5-54)||(26920325-26920374)
chr3 (6-55)||(48755499-48755548)
chr3 (1-55)||(1426641-1426695)
chr3 (1-55)||(15031386-15031440)
chr3 (1-55)||(26498607-26498661)
chr3 (5-54)||(44968025-44968074)
[»] chr7 (3 HSPs)
chr7 (1-53)||(15000812-15000864)
chr7 (1-55)||(36150982-36151036)
chr7 (2-55)||(15272382-15272435)
[»] chr6 (5 HSPs)
chr6 (1-55)||(10587946-10588000)
chr6 (1-55)||(13536727-13536781)
chr6 (1-55)||(26705194-26705248)
chr6 (1-55)||(10862179-10862232)
chr6 (1-55)||(25089318-25089372)
[»] chr5 (4 HSPs)
chr5 (1-55)||(10760067-10760121)
chr5 (1-55)||(17497161-17497215)
chr5 (1-55)||(19564714-19564768)
chr5 (1-54)||(21211477-21211530)
[»] chr1 (2 HSPs)
chr1 (1-55)||(13735611-13735666)
chr1 (1-54)||(50335607-50335660)
[»] scaffold0407 (2 HSPs)
scaffold0407 (1-55)||(895-948)
scaffold0407 (1-55)||(7359-7412)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-55)||(72048-72102)


Alignment Details
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 77 - 222
Target Start/End: Complemental strand, 37543794 - 37543649
Alignment:
Q  77 atgtttattactaattgtacaattgaactactctatcctgtagttttattattcgtgaaaatgaggatggtccaaattctttgggatgacatttataata 176  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  37543794 atgtttattactaattgtacaattgagctactctatcctgtagttttattattcgtgaaaatgaggatggtccaaactctttgggatgacatttataata 37543695  T
Q  177 tcatcaccagcttcacaattttacagtacaattttttgtcatggct 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  37543694 tcatcaccagcttcacaattttacagtacaattttttgtcatggct 37543649  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 37543905 - 37543846
Alignment:
Q  1 ttagtccctgaaattgatcaataaagtttacattcaggaactgttttgcaatttcactga 60  Q
    ||||||| ||||||||| |||||||||||||||||| ||||| |||||||||||||||||    
T  37543905 ttagtccatgaaattgaccaataaagtttacattcatgaactattttgcaatttcactga 37543846  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 12106980 - 12106926
Alignment:
Q  1 ttagtccctgaaattgatcaataaagtttacattcaggaactgttttgcaatttc 55  Q
    ||||||||||||||||| ||| | ||| ||||| |||| ||||||||||||||||    
T  12106980 ttagtccctgaaattgaccaacagagtctacatccagggactgttttgcaatttc 12106926  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 23625136 - 23625190
Alignment:
Q  1 ttagtccctgaaattgatcaataaagtttacattcaggaactgttttgcaatttc 55  Q
    |||||||||||||||||||||   ||| |||||||||||| |||||| |||||||    
T  23625136 ttagtccctgaaattgatcaacgcagtctacattcaggaagtgttttacaatttc 23625190  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 25149351 - 25149297
Alignment:
Q  1 ttagtccctgaaattgatcaataaagtttacattcaggaactgttttgcaatttc 55  Q
    ||||||| ||||||||| ||| | ||| |||||||||| ||||||||||||||||    
T  25149351 ttagtccttgaaattgaccaacagagtctacattcagggactgttttgcaatttc 25149297  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 2634137 - 2634083
Alignment:
Q  1 ttagtccctgaaattgatcaataaagtttacattcaggaactgttttgcaatttc 55  Q
    |||||| |||||||||| ||||||||| |||||||||| ||||||||||||||||    
T  2634137 ttagtcgctgaaattgaccaataaagtctacattcagggactgttttgcaatttc 2634083  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 5448362 - 5448416
Alignment:
Q  1 ttagtccctgaaattgatcaataaagtttacattcaggaactgttttgcaatttc 55  Q
    ||||| ||||||||||| ||| | |||||||||||||| ||||||||||||||||    
T  5448362 ttagttcctgaaattgaccaacagagtttacattcagggactgttttgcaatttc 5448416  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 26920325 - 26920374
Alignment:
Q  5 tccctgaaattgatcaataaagtttacattcaggaactgttttgcaattt 54  Q
    ||||||||||||||||| ||||| |||||||| |||||||||||||||||    
T  26920325 tccctgaaattgatcaacaaagtatacattcaagaactgttttgcaattt 26920374  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 48755499 - 48755548
Alignment:
Q  6 ccctgaaattgatcaataaagtttacattcaggaactgttttgcaatttc 55  Q
    |||||||||||| ||| | ||| |||||||||||||||||||||||||||    
T  48755499 ccctgaaattgaccaacagagtctacattcaggaactgttttgcaatttc 48755548  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 1426641 - 1426695
Alignment:
Q  1 ttagtccctgaaattgatcaataaagtttacattcaggaactgttttgcaatttc 55  Q
    |||||| |||||||||| ||| ||||| |||||||||  ||||||||||||||||    
T  1426641 ttagtcactgaaattgaccaacaaagtctacattcagtgactgttttgcaatttc 1426695  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 15031386 - 15031440
Alignment:
Q  1 ttagtccctgaaattgatcaataaagtttacattcaggaactgttttgcaatttc 55  Q
    ||||||||||||||||| ||| ||||| || ||| ||| ||||||||||||||||    
T  15031386 ttagtccctgaaattgaccaacaaagtctagatttagggactgttttgcaatttc 15031440  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 26498661 - 26498607
Alignment:
Q  1 ttagtccctgaaattgatcaataaagtttacattcaggaactgttttgcaatttc 55  Q
    ||||||||||||||||| ||| |  || |||||||||| ||||||||||||||||    
T  26498661 ttagtccctgaaattgaccaacatggtctacattcagggactgttttgcaatttc 26498607  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 44968025 - 44968074
Alignment:
Q  5 tccctgaaattgatcaataaagtttacattcaggaactgttttgcaattt 54  Q
    ||||||||||||| ||| ||||| |||||| ||| |||||||||||||||    
T  44968025 tccctgaaattgaccaacaaagtctacatttagggactgttttgcaattt 44968074  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 15000812 - 15000864
Alignment:
Q  1 ttagtccctgaaattgatcaataaagtttacattcaggaactgttttgcaatt 53  Q
    ||||||||||||||||| ||||||||| |||||| ||| ||||||||||||||    
T  15000812 ttagtccctgaaattgaccaataaagtctacatttagggactgttttgcaatt 15000864  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 36150982 - 36151036
Alignment:
Q  1 ttagtccctgaaattgatcaataaagtttacattcaggaactgttttgcaatttc 55  Q
    ||||||| ||||||||| ||| ||||| |||||||||| ||||||||||||||||    
T  36150982 ttagtccttgaaattgaccaacaaagtctacattcaggtactgttttgcaatttc 36151036  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 15272435 - 15272382
Alignment:
Q  2 tagtccctgaaattgatcaataaagtttacattcaggaactgttttgcaatttc 55  Q
    |||||||||||||||| ||| ||||| |||||||||| ||| ||||||||||||    
T  15272435 tagtccctgaaattgaccaacaaagtctacattcagggactattttgcaatttc 15272382  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 10588000 - 10587946
Alignment:
Q  1 ttagtccctgaaattgatcaataaagtttacattcaggaactgttttgcaatttc 55  Q
    ||||||||||||||||| ||| | ||| |||||||||| ||||||||||||||||    
T  10588000 ttagtccctgaaattgaacaacatagtctacattcagggactgttttgcaatttc 10587946  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 13536727 - 13536781
Alignment:
Q  1 ttagtccctgaaattgatcaataaagtttacattcaggaactgttttgcaatttc 55  Q
    |||||||||||||| || ||||| ||| |||||||||| ||||||||||||||||    
T  13536727 ttagtccctgaaatggaccaatagagtctacattcagggactgttttgcaatttc 13536781  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 26705194 - 26705248
Alignment:
Q  1 ttagtccctgaaattgatcaataaagtttacattcaggaactgttttgcaatttc 55  Q
    ||||||||||||||||| ||| || || |||||||||| ||||||||||||||||    
T  26705194 ttagtccctgaaattgaccaacaacgtctacattcagggactgttttgcaatttc 26705248  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 10862179 - 10862232
Alignment:
Q  1 ttagtccctgaaattgatcaataaagtttacattcaggaactgttttgcaatttc 55  Q
    ||||||||||||||||| |||| |||| |||||||||  ||||||||||||||||    
T  10862179 ttagtccctgaaattgaccaat-aagtctacattcagctactgttttgcaatttc 10862232  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 25089318 - 25089372
Alignment:
Q  1 ttagtccctgaaattgatcaataaagtttacattcaggaactgttttgcaatttc 55  Q
    ||||||| ||||||||| ||| | ||| || ||||||||||||||||||||||||    
T  25089318 ttagtccatgaaattgaccaacatagtctatattcaggaactgttttgcaatttc 25089372  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 10760121 - 10760067
Alignment:
Q  1 ttagtccctgaaattgatcaataaagtttacattcaggaactgttttgcaatttc 55  Q
    ||||||| ||||||||| ||| |||||||||||||||| |||||||| |||||||    
T  10760121 ttagtccttgaaattgaccaacaaagtttacattcagggactgtttttcaatttc 10760067  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 17497161 - 17497215
Alignment:
Q  1 ttagtccctgaaattgatcaataaagtttacattcaggaactgttttgcaatttc 55  Q
    ||||||||||||||||| ||| ||||| |||||||||| ||| ||||||||||||    
T  17497161 ttagtccctgaaattgaccaacaaagtctacattcagggactattttgcaatttc 17497215  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 19564768 - 19564714
Alignment:
Q  1 ttagtccctgaaattgatcaataaagtttacattcaggaactgttttgcaatttc 55  Q
    ||||||||||||||||||||  | ||| |||||| || |||||||||||||||||    
T  19564768 ttagtccctgaaattgatcaccagagtctacatttagaaactgttttgcaatttc 19564714  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 21211530 - 21211477
Alignment:
Q  1 ttagtccctgaaattgatcaataaagtttacattcaggaactgttttgcaattt 54  Q
    ||||| ||||||||||| ||| ||||| |||||||||  |||||||||||||||    
T  21211530 ttagttcctgaaattgaccaacaaagtctacattcagagactgttttgcaattt 21211477  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 13735611 - 13735666
Alignment:
Q  1 ttagtccctgaaattgatcaataa-agtttacattcaggaactgttttgcaatttc 55  Q
    |||||||||||||||||||||  | ||| |||||||||| ||||||||||||||||    
T  13735611 ttagtccctgaaattgatcaaacagagtctacattcagggactgttttgcaatttc 13735666  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 50335607 - 50335660
Alignment:
Q  1 ttagtccctgaaattgatcaataaagtttacattcaggaactgttttgcaattt 54  Q
    ||||||||| ||||||| ||| | ||| |||||||||| |||||||||||||||    
T  50335607 ttagtccctaaaattgaccaacagagtctacattcagggactgttttgcaattt 50335660  T

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Target: scaffold0407 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0407
Description:

Target: scaffold0407; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 948 - 895
Alignment:
Q  1 ttagtccctgaaattgatcaataaagtttacattcaggaactgttttgcaatttc 55  Q
    |||||||||||||||||  |||| ||| |||||||||| ||||||||||||||||    
T  948 ttagtccctgaaattgactaatagagtctacattcagg-actgttttgcaatttc 895  T

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Target: scaffold0407; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 7412 - 7359
Alignment:
Q  1 ttagtccctgaaattgatcaataaagtttacattcaggaactgttttgcaatttc 55  Q
    |||||||||||||||||  |||| ||| |||||||||| ||||||||||||||||    
T  7412 ttagtccctgaaattgactaatagagtctacattcagg-actgttttgcaatttc 7359  T

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Target: scaffold0018 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 72048 - 72102
Alignment:
Q  1 ttagtccctgaaattgatcaataaagtttacattcaggaactgttttgcaatttc 55  Q
    ||||||||||||||||| ||  ||| | |||||||||| ||||||||||||||||    
T  72048 ttagtccctgaaattgaccatcaaaatctacattcagggactgttttgcaatttc 72102  T

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