View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14483_high_57 (Length: 237)
Name: NF14483_high_57
Description: NF14483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14483_high_57 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 55636914 - 55636695
Alignment:
| Q |
1 |
gcttcaataacagcctgcatcatacataaagggtagagttcagagtgcattttcggtaaagaaagcaacataaaatcccatacaaggcagtaaaatgaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55636914 |
gcttcaataacagcctgcatcatacataaaaggtagagttcagagtgcatttt-ggtaaagaaagcaacataaaatcccatacaaggcagtaaaatgaaa |
55636816 |
T |
|
| Q |
101 |
acaaaaatcaagacccaacctagaacagaaaacataatttcaatagtcaagcatcacaatacattcccttaggtgatgtattaacaacaaaatggaaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55636815 |
acaaaaatcaagacccaacctagaacagaaaacataatgtcaatagtcaagcatcacaatacattcccttaggtgatgtattaacaacaaaatggaaaat |
55636716 |
T |
|
| Q |
201 |
aagggtttacggtcaccgaac |
221 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
55636715 |
aagggtttacggtcaccgaac |
55636695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 52983404 - 52983610
Alignment:
| Q |
1 |
gcttcaataacagcctgcatcatacataaagggtagagttcagagtgcattttcggtaaagaaagcaacataaaatcccatacaaggcagtaaaatgaaa |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||| || || ||||||||||| || |||| |||||| ||||| || ||||||| | || |
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|
| T |
52983404 |
gcttcaataacagcctgtatcatacataaaaggtagagttcatagcgctttttcggtaaataagccaactaaaaatcacatacttggtagtaaaacgcaa |
52983503 |
T |
|
| Q |
101 |
acaaaaatcaagacccaacctagaacagaaaacataatttcaatagtcaagcatcacaatacattcccttaggtgatgtattaacaacaaaatggaaaat |
200 |
Q |
| |
|
|||||| ||||||| |||| | ||||||||||||||| ||||||||||||||| ||||||| ||||| |||||| || | ||||||||||||||| |
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|
| T |
52983504 |
acaaaactcaagacataacc-aaaacagaaaacataatgtcaatagtcaagcattgcaatacacccccttcattgatgtctttaaaacaaaatggaaaat |
52983602 |
T |
|
| Q |
201 |
aagggttt |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
52983603 |
aagggttt |
52983610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 54629907 - 54629700
Alignment:
| Q |
1 |
gcttcaataacagcctgcatcatacataaagggtagagttcagagtgcattttcggtaaagaaagcaacataaaatcccatacaaggcagtaaaatgaaa |
100 |
Q |
| |
|
|||||||||||||||||| | || |||||| ||||||||| ||||||| ||||||||||| || |||| ||||| ||| |||||||||||| || |
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|
| T |
54629907 |
gcttcaataacagcctgcgtaatgcataaaaggtagagtttagagtgctttttcggtaaataagccaactaaaaatatg-tacttggcagtaaaatgcaa |
54629809 |
T |
|
| Q |
101 |
acaaaaatcaagacccaacctagaacagaaaacataatttcaatagtcaagcatcacaatacattcccttaggtgatgtattaacaacaaaatggaaaat |
200 |
Q |
| |
|
| || | ||||| | ||||| | ||||||||||||||| |||||||||||| | ||||||||||| ||| |||||||||| ||||||||||||||||| |
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|
| T |
54629808 |
a-aacactcaagcctcaaccaaaaacagaaaacataatgccaatagtcaagcgtaacaatacattctcttcagtgatgtatttacaacaaaatggaaaat |
54629710 |
T |
|
| Q |
201 |
aagggtttac |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
54629709 |
aagggtttac |
54629700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 55626828 - 55627035
Alignment:
| Q |
1 |
gcttcaataacagcctgcatcatacataaagggtagagttcagagtgcattttcggtaaagaaagcaacataaaatcccatacaa-------ggcagtaa |
93 |
Q |
| |
|
||||| |||||||||||||| ||||||||| ||| ||||||| | || ||||||||||| || ||||| |||||| ||||| |||||||| |
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|
| T |
55626828 |
gcttcgataacagcctgcattatacataaaaggttgagttcacaacgctttttcggtaaataaggcaactaaaaatcacatacttagcacttggcagtaa |
55626927 |
T |
|
| Q |
94 |
aatgaaaacaaaaatcaagacccaacctagaacagaaaacataatttcaatagtcaagcatcacaatacattcccttaggtgatgtattaacaacaaaat |
193 |
Q |
| |
|
|||| || ||||| | ||||||||||||| ||||||||| ||||| |||||||||||||| |||||||||| ||||| ||||||||| || ||||||| |
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|
| T |
55626928 |
aatgcaagcaaaact-aagacccaacctaaaacagaaaatataatatcaatagtcaagcaccacaatacatccccttcaatgatgtatttactacaaaat |
55627026 |
T |
|
| Q |
194 |
ggaaaataa |
202 |
Q |
| |
|
||||||||| |
|
|
| T |
55627027 |
ggaaaataa |
55627035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 202
Target Start/End: Original strand, 55619530 - 55619731
Alignment:
| Q |
7 |
ataacagcctgcatcatacataaagggtagagttcagagtgcattttcggtaaagaaagcaacataaaatcccatacaa-------ggcagtaaaatgaa |
99 |
Q |
| |
|
|||||||||||||| ||||||||| ||| ||||||| | || ||||||||||| || ||||| |||||| ||||| |||||||||||| | |
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|
| T |
55619530 |
ataacagcctgcattatacataaaaggttgagttcacaacgctttttcggtaaataaggcaactaaaaatcacatacttagcacttggcagtaaaatgca |
55619629 |
T |
|
| Q |
100 |
aacaaaaatcaagacccaacctagaacagaaaacataatttcaatagtcaagcatcacaatacattcccttaggtgatgtattaacaacaaaatggaaaa |
199 |
Q |
| |
|
| ||||| | ||||||||||||| ||||||||| ||||| |||||||||||||| |||||||||| ||||| ||||||||| || ||||||||||||| |
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|
| T |
55619630 |
agcaaaact-aagacccaacctaaaacagaaaatataatatcaatagtcaagcaccacaatacatccccttcaatgatgtatttactacaaaatggaaaa |
55619728 |
T |
|
| Q |
200 |
taa |
202 |
Q |
| |
|
||| |
|
|
| T |
55619729 |
taa |
55619731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 202
Target Start/End: Original strand, 55657880 - 55658081
Alignment:
| Q |
7 |
ataacagcctgcatcatacataaagggtagagttcagagtgcattttcggtaaagaaagcaacataaaatcccatacaa-------ggcagtaaaatgaa |
99 |
Q |
| |
|
|||||||||||||| ||||||||| ||| ||||||| | || ||||||||||| || ||||| |||||| ||||| |||||||||||| | |
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|
| T |
55657880 |
ataacagcctgcattatacataaaaggttgagttcacaacgctttttcggtaaataaggcaactaaaaatcacatacttagcacttggcagtaaaatgca |
55657979 |
T |
|
| Q |
100 |
aacaaaaatcaagacccaacctagaacagaaaacataatttcaatagtcaagcatcacaatacattcccttaggtgatgtattaacaacaaaatggaaaa |
199 |
Q |
| |
|
| ||||| | ||||||||||||| ||||||||| ||||| |||||||||||||| |||||||||| ||||| ||||||||| || ||||||||||||| |
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|
| T |
55657980 |
agcaaaact-aagacccaacctaaaacagaaaatataatatcaatagtcaagcaccacaatacatccccttcaatgatgtatttactacaaaatggaaaa |
55658078 |
T |
|
| Q |
200 |
taa |
202 |
Q |
| |
|
||| |
|
|
| T |
55658079 |
taa |
55658081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 55664111 - 55664284
Alignment:
| Q |
1 |
gcttcaataacagcctgcatcata----cataaagggtagagttcagagtgcattttcggtaaagaaagcaacataaaatcccatacaaggcagtaaaat |
96 |
Q |
| |
|
||||||||||||||||||| |||| |||||| | ||||||||||||||| ||||||||||| || |||| |||||| |||||| ||||||||||| |
|
|
| T |
55664111 |
gcttcaataacagcctgcaacatatatacataaaagctagagttcagagtgctttttcggtaaataagccaactaaaaatcacatacatggcagtaaaat |
55664210 |
T |
|
| Q |
97 |
gaaaacaaa-------aatcaagacccaacctagaacagaaaacataatttcaatagtcaagcatcacaatacat |
164 |
Q |
| |
|
| ||||| | | ||||||||||||| | |||||||| ||| || ||||||||||||||||||||||||| |
|
|
| T |
55664211 |
gcaaacagaactcaggagtcaagacccaacccaaaacagaaaccat-atgtcaatagtcaagcatcacaatacat |
55664284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 9891201 - 9890997
Alignment:
| Q |
1 |
gcttcaataacagcctgcatcataca--taaagggtagagttcagagtgcattttcggtaaagaaagcaacataaaatcccatacaaggcagtaaaatga |
98 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||||||| || |||||| ||| ||| |||| ||| || ||||| |||||||||||| |
|
|
| T |
9891201 |
gcttcaataacagcctgcatcatacacataaaaggtagagttcagacggccttttcgaaaaataaaacaactaaaattcacatacctggcagtaaaatgc |
9891102 |
T |
|
| Q |
99 |
aaacaaaaatcaagacccaacctagaacagaaaacataatttcaatagtcaagcatcacaatacattcccttaggtgatgtattaacaacaaaatggaaa |
198 |
Q |
| |
|
|||||||| |||||||||| || | |||||||||||||| | ||||||||| ||||| || ||| ||||| ||||||||||| ||| ||||||||||| |
|
|
| T |
9891101 |
aaacaaaactcaagacccagcccaaaacagaaaacataaagtaaatagtcaatcatcataacacaaccccttcggtgatgtatttacagcaaaatggaaa |
9891002 |
T |
|
| Q |
199 |
ataag |
203 |
Q |
| |
|
|||| |
|
|
| T |
9891001 |
ctaag |
9890997 |
T |
|
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