View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14483_high_60 (Length: 216)
Name: NF14483_high_60
Description: NF14483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14483_high_60 |
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| [»] scaffold0707 (2 HSPs) |
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Alignment Details
Target: scaffold0707 (Bit Score: 123; Significance: 2e-63; HSPs: 2)
Name: scaffold0707
Description:
Target: scaffold0707; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 77 - 199
Target Start/End: Complemental strand, 5705 - 5583
Alignment:
| Q |
77 |
attatagattcaaacaattgtaaacagttgaagagaacttacttccaaggagttggaactaagctttcaacgtattcaatggccgatgtccaacgtattc |
176 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5705 |
attatagattcaaacaattgtaaacagttgaagagaacttacttccaaggagttggaactaagctttcaacgtattcaatggccgatgtccaacgtattc |
5606 |
T |
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| Q |
177 |
tgttgtcaaatattgttatctct |
199 |
Q |
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||||||||||||||||||||||| |
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| T |
5605 |
tgttgtcaaatattgttatctct |
5583 |
T |
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Target: scaffold0707; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 5938 - 5883
Alignment:
| Q |
16 |
aatactcttttgtgagaatcattttctggagtataattaatataacataaaaacaa |
71 |
Q |
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| T |
5938 |
aatactcctttgtgagaatcattttctagagtataattaatataacataaaaacaa |
5883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 123; Significance: 2e-63; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 77 - 199
Target Start/End: Complemental strand, 33576497 - 33576375
Alignment:
| Q |
77 |
attatagattcaaacaattgtaaacagttgaagagaacttacttccaaggagttggaactaagctttcaacgtattcaatggccgatgtccaacgtattc |
176 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33576497 |
attatagattcaaacaattgtaaacagttgaagagaacttacttccaaggagttggaactaagctttcaacgtattcaatggccgatgtccaacgtattc |
33576398 |
T |
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| Q |
177 |
tgttgtcaaatattgttatctct |
199 |
Q |
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| T |
33576397 |
tgttgtcaaatattgttatctct |
33576375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 33576730 - 33576675
Alignment:
| Q |
16 |
aatactcttttgtgagaatcattttctggagtataattaatataacataaaaacaa |
71 |
Q |
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| T |
33576730 |
aatactcctttgtgagaatcattttctagagtataattaatataacataaaaacaa |
33576675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 34861615 - 34861675
Alignment:
| Q |
99 |
aacagttgaagagaacttacttccaaggagttggaactaagctttcaacgtattcaatggc |
159 |
Q |
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|||||| |||||||||||||||||||||||| |||||||||||||||||||| || ||||| |
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| T |
34861615 |
aacagtagaagagaacttacttccaaggagtcggaactaagctttcaacgtaatccatggc |
34861675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 159
Target Start/End: Complemental strand, 5979390 - 5979311
Alignment:
| Q |
80 |
atagattcaaacaattgtaaacagttgaagagaacttacttccaaggagttggaactaagctttcaacgtattcaatggc |
159 |
Q |
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||||||||||||||||| ||| | ||||||||||||||||||| |||| | ||| |||||||||| ||| |||||||| |
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| T |
5979390 |
atagattcaaacaattgaaaatgatagaagagaacttacttccaatgagtcgaaaccaagctttcaatgtaatcaatggc |
5979311 |
T |
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