View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14483_high_7 (Length: 512)
Name: NF14483_high_7
Description: NF14483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14483_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 12 - 390
Target Start/End: Original strand, 4770633 - 4771012
Alignment:
| Q |
12 |
caaatgcttcacttgcctgataacctcggctagtaaagttgctttgtccatctataagaatatcatcagcaccattaataacagtatgtacatatgcgaa |
111 |
Q |
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| T |
4770633 |
caaatgcttcacttgcctaataacctcagctagtaaagttgctttgtccatctataagaatatcatcagcaacattaataacagtatgtacatatgcgaa |
4770732 |
T |
|
| Q |
112 |
actatgacacattgacaccgaaatggacatcgtaaatgacacatagacatcactaggtcgtatatcctgtcttattaaatgtattgtttttgttttaagg |
211 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4770733 |
actatgacacattgacaccgaaatggacatcataaataacacatagacatcactaggtcgtatatcctgtcttattaaatgtattgtttttgttttaagg |
4770832 |
T |
|
| Q |
212 |
attattaaatggttggttgcctaattccttcatcattggtcaggtaaagttattttctagacttagacccaccaaaacaaataaattaatactagtagta |
311 |
Q |
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| T |
4770833 |
attattaaatggttggttgcctaattccttcatcattggtcaggtaaagttattttctagacttagacccaccaaaacaaataaattaatactagtagta |
4770932 |
T |
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| Q |
312 |
aaactgcataaactatttgaatagcttaaccagctgttgacagctattaataaaaac-ttgagaaagaatgatttgttga |
390 |
Q |
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| T |
4770933 |
aaactgcataaactatttgaatagcttaaccagctgttgacagctattaataaaaacattgagaaagaattatttgttga |
4771012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 388 - 502
Target Start/End: Original strand, 4771033 - 4771151
Alignment:
| Q |
388 |
tgatgtggagtgtgggcccacaactaagaatcatttgttatttatatattattgaa----taataaatgaaataatcttagtttgggaccatcgaagata |
483 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4771033 |
tgatgtggagtgtgggcccacaactaagaatcatttgttatttatttattattgaatgaataataaatgaaataatcttagtttgggaccatcgaagata |
4771132 |
T |
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| Q |
484 |
aatctgcaaaagagaataa |
502 |
Q |
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| T |
4771133 |
aatctgcaaaaaagaataa |
4771151 |
T |
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