View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14483_low_10 (Length: 484)
Name: NF14483_low_10
Description: NF14483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14483_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Original strand, 8851535 - 8852004
Alignment:
| Q |
1 |
tttaataagtagattgnnnnnnnctgaaagtgacacctatcatgaacagtgttatcaatcgcggatcgcaaaaaataatggcttgtactaaatatgcgga |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8851535 |
tttaataagtagattgaaaaaaactgaaagtgacacctatcatgaacagtgttatcaatcgcggatcgcaaaaaataatggcttgtactaaatatgcgga |
8851634 |
T |
|
| Q |
101 |
tcacaaaataatagcgatttcttcacaatacgatgcgctatcccgaaaataatgcactataccgtcgggatagacattctttgacaacactgatcatgta |
200 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8851635 |
tcacaaaataacagcgatttcttcacaatacgatgcgctatcccgaatataatgcgctataccgtcgggatagacattctttgacaacactgatcatgta |
8851734 |
T |
|
| Q |
201 |
tacctcatattcaaagagctaagggaaaatnnnnnnntata-tattgggacaaaaggggaagtaatttaatagttctggaaaacaaaaatttggcagcaa |
299 |
Q |
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|||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8851735 |
tacctcatattcaaagagctaagggaaaataaaaaaaaaaaatattgggacaaaaggggaagtaatttaatagttctggaaaacaaaaatttggcagcaa |
8851834 |
T |
|
| Q |
300 |
tcgtgcccaatggcaataatagaaatcgaatttcggtatcaccaatttccacactttgttttaaatgtataacaatcgaaaaaccaagacaacaaatgaa |
399 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8851835 |
tcatgcccaatggcaataatagaaatcgaatttcggtatcaccaatttccacactttgttttaaatgtataacaatcgaaaaaccaagacaacaaatgaa |
8851934 |
T |
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| Q |
400 |
tgcatagagcacttcaataaagtgaagtcttgaagaaaaaggttatgtccaacttgtggcaatgattgtg |
469 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8851935 |
tgcatagagcacttcaataaagtgaagtcttgaagaaaaaggttatgtccaacttgtggcaatgattgtg |
8852004 |
T |
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