View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14483_low_12 (Length: 477)
Name: NF14483_low_12
Description: NF14483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14483_low_12 |
 | |
|
| [»] scaffold1819 (2 HSPs) |
| | |
|
| [»] scaffold1104 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 34406612 - 34407101
Alignment:
| Q |
1 |
tttgttacatgttttgcatgcatacacattgtaacctacactttctccttgttcctccttctccagtagaagaataagtagtgatggagaaaggagtagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34406612 |
tttgttacatgttttgcatgcatacacattgtaacctacactttctccttgttcctccttctccagtagatgaataagtagtgatggagaaaggagtagg |
34406711 |
T |
|
| Q |
101 |
agtttgtggtggctttataaccctttcaattatctcccctttggtgatattcatggtgtgttctctagagcctaaagataattgatgtt--tatgggatg |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
34406712 |
agtttgtggtggctttataaccctttcaatta--tcccctttggtgatattcatggtgtgttctctagagcctaaagataattgatgttcatatgcgatg |
34406809 |
T |
|
| Q |
199 |
cttcaatgttgatttgga-tttggattaagagaggagttgcaatttatagatataaaagtaaactaattaataannnnnnnaaacacgaaatatgaaatt |
297 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
34406810 |
cttccatgttgatttggattttggattaagagaggagttgcaatttatagatataaaagtaaactaattaataattttttcaaaaacgaaatatgaaatt |
34406909 |
T |
|
| Q |
298 |
tattctcatacaattccacttaactttta------------------atatttactttactttgtgtttgaaaagtctatttttcgtgataatagtgtat |
379 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
34406910 |
tattctcatacaattccacttaacttttaagatggttgtaaaacatgatatatactttactttgtgtttgaaaagtctatttttcgtgatgatagtgtct |
34407009 |
T |
|
| Q |
380 |
ggggaacaccaaactctgcttgtcagaggtggatcgcgtggtggatgacttttgatcgtgattcctgacacattgttagaaagttattctca |
471 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
34407010 |
ggggaacaccaaactctgcttgccagagatggatcgtgtggtggatgacttttgatcgtgattcctcacacattgtgagaaagttattctca |
34407101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 34710363 - 34710097
Alignment:
| Q |
1 |
tttgttacatgttttgcatgcatacacattgtaacctacactttctccttgttcctccttctccagtagaagaataagtagtgatggagaaaggagtagg |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| | ||||||||| ||||| ||||||||| |||||||||||||| | | ||||| |||| |||| |
|
|
| T |
34710363 |
tttgttgcatgttttgcatgcatacacattgtaacgtgcactttctc-ttgtttctccttctctagtagaagaataagcacttgtggaggaagggttagg |
34710265 |
T |
|
| Q |
101 |
agtttgtggtggctttataaccctttcaattatctcccctttggtgatattcatggtgtgttctctagagcctaaagataattgatgtttatgggatgct |
200 |
Q |
| |
|
|| ||| | ||| ||||||||| ||| | |||| | ||||| ||||||||| ||| ||||||||| |||||||||| | ||| |||| ||| |||||| |
|
|
| T |
34710264 |
agattgcgatgggtttataaccttttgagttatattcccttcggtgatattgatg---tgttctctatagcctaaagagagttgttgttcatgagatgct |
34710168 |
T |
|
| Q |
201 |
tcaatgttgatttggatttggattaagagaggagttgcaatttatagatataaaagtaaactaattaataa |
271 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||| |
|
|
| T |
34710167 |
tccatgttgatttggatttggattaagagaggagttgcaatttatagagataagaataaactaattaataa |
34710097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 159 - 474
Target Start/End: Complemental strand, 34713881 - 34713553
Alignment:
| Q |
159 |
tgttctctagagcctaaagataattgatgtttatgggatgcttcaatgttgatttggatttggattaagagaggagttgcaatttatagatataaaagta |
258 |
Q |
| |
|
||||||||||||||||| || | ||| |||| ||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||| || | | || |
|
|
| T |
34713881 |
tgttctctagagcctaatgagagttgttgttcatgagatgcttccatgttgttttggatttggattaagagaggagttgcaatttatagagatgagaata |
34713782 |
T |
|
| Q |
259 |
aactaattaataannnnnnnaaacacgaaatatgaaatttattctcatacaattccacttaacttttaatat--tt----------------actttact |
340 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||| |||||||||| || || |||||||| |
|
|
| T |
34713781 |
aactaattaataatatttttca--------tatgaaatttattctcatacaattccatataacttttaagatggttgtaaagcatgatgtccactttact |
34713690 |
T |
|
| Q |
341 |
ttgtgtttgaaaagtcta-tttttcgtgataatagtgtatggggaacac--caaactctgcttgtcagaggtggatcgcgtggtggatgacttttgatcg |
437 |
Q |
| |
|
||| ||| ||||||| || ||||||||||| |||||| || |||||| |||||||| ||| | |||||||||||| ||||| ||||||||| |||| |
|
|
| T |
34713689 |
ttgcgttcgaaaagtttattttttcgtgattatagtgcgtgatgaacacaaaaaactctgtttgcctgaggtggatcgcatggtgtatgacttttaatcg |
34713590 |
T |
|
| Q |
438 |
tgattcctgacacattgttagaaagttattctcaaat |
474 |
Q |
| |
|
||||||| |||||| ||||||||||||| |||||||| |
|
|
| T |
34713589 |
tgattcccgacacaatgttagaaagttactctcaaat |
34713553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 390 - 474
Target Start/End: Complemental strand, 34709967 - 34709883
Alignment:
| Q |
390 |
aaactctgcttgtcagaggtggatcgcgtggtggatgacttttgatcgtgattcctgacacattgttagaaagttattctcaaat |
474 |
Q |
| |
|
|||||| ||||| |||||||||||| ||||||| |||| |||| ||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
34709967 |
aaactccgcttgccagaggtggatcacgtggtgtatgagttttaatcgtgatttccgacacattgttagaaagttattctcaaat |
34709883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 34713980 - 34713882
Alignment:
| Q |
8 |
catgttttgcatgcatacacattgtaacctacactttctccttgttcctccttctccagtagaagaataag---tagtgatggagaaaggagtaggagtt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||| ||||||||||||||| ||||||||||||| || ||||||||||||| |||||| | |
|
|
| T |
34713980 |
catgttttgcatgcatacacattgtaacgtgcactttct-cttgttcctccttct---gtagaagaataagcaatattgatggagaaagggataggagat |
34713885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 404 - 473
Target Start/End: Complemental strand, 34709836 - 34709767
Alignment:
| Q |
404 |
agaggtggatcgcgtggtggatgacttttgatcgtgattcctgacacattgttagaaagttattctcaaa |
473 |
Q |
| |
|
||||||||||| ||||||||||| |||| ||||| |||||||| ||| ||||||||||||| ||||||| |
|
|
| T |
34709836 |
agaggtggatcacgtggtggatggctttcaatcgtaattcctgatacactgttagaaagttactctcaaa |
34709767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 109
Target Start/End: Complemental strand, 40689368 - 40689312
Alignment:
| Q |
53 |
tcctccttctccagtagaagaataagtagtgatggagaaaggagtaggagtttgtgg |
109 |
Q |
| |
|
||||||||| ||||| ||||||| || ||||||||||||||| |||||| |||||| |
|
|
| T |
40689368 |
tcctccttcaccagttgaagaattagcagtgatggagaaaggtataggagattgtgg |
40689312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1819 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: scaffold1819
Description:
Target: scaffold1819; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 5 - 172
Target Start/End: Original strand, 775 - 941
Alignment:
| Q |
5 |
ttacatgttttgcatgcatacacattgtaacctacactttctccttgttcctccttctccagtagaagaataagtagtgatggagaaaggagtaggagtt |
104 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| || | | |||||||| | |||| ||||||||||| || |||||| |||||||| |||||| | |
|
|
| T |
775 |
ttacatgttttgcatgcatacacattgcaacctggtgttccac-ttgttccttcctctctagtagaagaattagcagtgatagagaaagggataggagat |
873 |
T |
|
| Q |
105 |
tgtggtggctttataaccctttcaattatctcccctttggtgatattcatggtgtgttctctagagcc |
172 |
Q |
| |
|
| ||||||||||||| |||| |||||||||| |||||| |||| |||||||||||||||||||| |
|
|
| T |
874 |
atttgtggctttataactcttttaattatctcctctttggccgtattaatggtgtgttctctagagcc |
941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1819; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 436 - 272
Alignment:
| Q |
1 |
tttgttacatgttttgcatgcatacacattgtaacctacactttctccttgttcctccttctccagtagaagaataagtagtgatggagaaaggagtagg |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||| | ||| | ||||| | ||||| ||||||||| |||||| | |||||| ||||||| ||| |
|
|
| T |
436 |
tttgttacatgttttggatgcatacacattgcagcctgctctttcac-ttgtttctccttctc------aagaattggcagtgatagagaaagagataga |
344 |
T |
|
| Q |
101 |
agtttgtggtggctttataaccctttcaattatctcccctttggtgatattcatggtgtgttctctagagcc |
172 |
Q |
| |
|
|| |||||||| |||||||| |||| |||||||||| | |||| ||||| |||| ||||||||||||||| |
|
|
| T |
343 |
agattgtggtgattttataactcttttaattatctcctccttggccatattaatggcgtgttctctagagcc |
272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1104 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: scaffold1104
Description:
Target: scaffold1104; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 5 - 172
Target Start/End: Original strand, 2297 - 2463
Alignment:
| Q |
5 |
ttacatgttttgcatgcatacacattgtaacctacactttctccttgttcctccttctccagtagaagaataagtagtgatggagaaaggagtaggagtt |
104 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| || | | |||||||| | |||| ||||||||||| || |||||| |||||||| |||||| | |
|
|
| T |
2297 |
ttacatgttttgcatgcatacacattgcaacctggtgttccac-ttgttccttcctctctagtagaagaattagcagtgatagagaaagggataggagat |
2395 |
T |
|
| Q |
105 |
tgtggtggctttataaccctttcaattatctcccctttggtgatattcatggtgtgttctctagagcc |
172 |
Q |
| |
|
| ||||||||||||| |||| |||||||||| |||||| |||| |||||||||||||||||||| |
|
|
| T |
2396 |
atttgtggctttataactcttttaattatctcctctttggccgtattaatggtgtgttctctagagcc |
2463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1104; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 1958 - 1794
Alignment:
| Q |
1 |
tttgttacatgttttgcatgcatacacattgtaacctacactttctccttgttcctccttctccagtagaagaataagtagtgatggagaaaggagtagg |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||| | ||| | ||||| | ||||| ||||||||| |||||| | |||||| ||||||| ||| |
|
|
| T |
1958 |
tttgttacatgttttggatgcatacacattgcagcctgctctttcac-ttgtttctccttctc------aagaattggcagtgatagagaaagagataga |
1866 |
T |
|
| Q |
101 |
agtttgtggtggctttataaccctttcaattatctcccctttggtgatattcatggtgtgttctctagagcc |
172 |
Q |
| |
|
|| |||||||| |||||||| |||| |||||||||| | |||| ||||| |||| ||||||||||||||| |
|
|
| T |
1865 |
agattgtggtgattttataactcttttaattatctcctccttggccatattaatggcgtgttctctagagcc |
1794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University