View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14483_low_13 (Length: 475)

Name: NF14483_low_13
Description: NF14483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14483_low_13
NF14483_low_13
[»] chr5 (13 HSPs)
chr5 (15-282)||(7452895-7453161)
chr5 (279-457)||(7451505-7451682)
chr5 (156-361)||(18593471-18593675)
chr5 (156-361)||(29087707-29087904)
chr5 (157-302)||(34378386-34378531)
chr5 (164-312)||(5656749-5656897)
chr5 (156-312)||(7161662-7161818)
chr5 (157-264)||(698692-698799)
chr5 (157-247)||(18313303-18313393)
chr5 (211-259)||(41250896-41250944)
chr5 (156-250)||(18255098-18255192)
chr5 (270-312)||(18313406-18313448)
chr5 (328-361)||(34378326-34378359)
[»] chr1 (15 HSPs)
chr1 (157-361)||(30685573-30685777)
chr1 (157-311)||(40216155-40216308)
chr1 (156-361)||(24449579-24449783)
chr1 (156-361)||(24684141-24684344)
chr1 (157-302)||(7002476-7002619)
chr1 (156-302)||(31584688-31584833)
chr1 (196-361)||(5389111-5389275)
chr1 (164-309)||(46814121-46814266)
chr1 (187-361)||(5459389-5459562)
chr1 (157-301)||(6804825-6804969)
chr1 (156-264)||(41920782-41920890)
chr1 (211-312)||(46692522-46692624)
chr1 (157-254)||(14320658-14320755)
chr1 (206-302)||(24659217-24659313)
chr1 (163-252)||(27031496-27031585)
[»] chr3 (24 HSPs)
chr3 (156-361)||(47235926-47236131)
chr3 (157-312)||(45164131-45164285)
chr3 (157-302)||(2392152-2392297)
chr3 (157-302)||(2393915-2394060)
chr3 (156-361)||(34475406-34475609)
chr3 (156-312)||(31483157-31483313)
chr3 (157-312)||(19176783-19176938)
chr3 (187-299)||(30352118-30352230)
chr3 (157-361)||(53248129-53248332)
chr3 (164-302)||(17551244-17551382)
chr3 (163-309)||(40023224-40023370)
chr3 (157-258)||(21343678-21343779)
chr3 (184-312)||(43012654-43012782)
chr3 (157-255)||(23327997-23328095)
chr3 (156-253)||(50305222-50305319)
chr3 (196-298)||(9583741-9583843)
chr3 (157-252)||(25506719-25506814)
chr3 (157-255)||(45399119-45399217)
chr3 (157-254)||(4463734-4463831)
chr3 (163-255)||(50559978-50560070)
chr3 (159-264)||(37158629-37158735)
chr3 (157-220)||(47439284-47439347)
chr3 (325-361)||(2392323-2392359)
chr3 (325-361)||(2394087-2394123)
[»] chr8 (24 HSPs)
chr8 (157-361)||(20138655-20138858)
chr8 (157-358)||(36631055-36631254)
chr8 (157-312)||(12897925-12898080)
chr8 (161-361)||(16457128-16457328)
chr8 (157-311)||(31207011-31207165)
chr8 (157-312)||(32065934-32066088)
chr8 (188-310)||(27889125-27889247)
chr8 (188-310)||(27947783-27947905)
chr8 (157-302)||(9519793-9519938)
chr8 (157-302)||(22773908-22774053)
chr8 (156-309)||(15821025-15821177)
chr8 (161-302)||(37986508-37986649)
chr8 (157-361)||(24995044-24995247)
chr8 (158-311)||(35821534-35821685)
chr8 (212-312)||(34388711-34388811)
chr8 (160-252)||(35815896-35815988)
chr8 (215-310)||(41893112-41893206)
chr8 (157-255)||(3584071-3584170)
chr8 (163-302)||(38577441-38577580)
chr8 (156-250)||(13538324-13538418)
chr8 (156-250)||(13686056-13686150)
chr8 (156-217)||(9659474-9659535)
chr8 (212-255)||(10837941-10837984)
chr8 (325-361)||(9519728-9519764)
[»] chr7 (23 HSPs)
chr7 (157-361)||(44353213-44353416)
chr7 (156-361)||(31971783-31971987)
chr7 (156-310)||(5859931-5860085)
chr7 (157-302)||(47325534-47325678)
chr7 (157-312)||(10244457-10244612)
chr7 (157-310)||(25161088-25161240)
chr7 (157-302)||(33434480-33434625)
chr7 (158-361)||(3867344-3867545)
chr7 (196-312)||(38306537-38306653)
chr7 (158-312)||(41089396-41089547)
chr7 (157-308)||(3419048-3419197)
chr7 (156-261)||(42454382-42454487)
chr7 (159-312)||(37795273-37795426)
chr7 (159-312)||(37795601-37795754)
chr7 (206-350)||(40726203-40726347)
chr7 (171-308)||(3419321-3419456)
chr7 (157-302)||(34391469-34391614)
chr7 (157-296)||(6585179-6585318)
chr7 (162-311)||(43482183-43482331)
chr7 (157-258)||(48161690-48161790)
chr7 (159-254)||(11378772-11378866)
chr7 (157-219)||(40726140-40726202)
chr7 (157-231)||(35745481-35745555)
[»] chr4 (19 HSPs)
chr4 (156-312)||(30964714-30964870)
chr4 (157-312)||(27555579-27555735)
chr4 (156-294)||(35329302-35329440)
chr4 (157-264)||(8705789-8705896)
chr4 (157-254)||(46698428-46698525)
chr4 (157-361)||(8255255-8255459)
chr4 (157-361)||(8268673-8268877)
chr4 (157-258)||(7703018-7703118)
chr4 (211-361)||(20464818-20464967)
chr4 (161-254)||(49528421-49528514)
chr4 (156-252)||(2826118-2826214)
chr4 (156-261)||(4306033-4306137)
chr4 (157-350)||(30167212-30167407)
chr4 (157-312)||(36689454-36689609)
chr4 (158-294)||(11281375-11281511)
chr4 (163-252)||(35341006-35341097)
chr4 (188-255)||(52868792-52868859)
chr4 (162-255)||(31050315-31050408)
chr4 (157-240)||(9750116-9750198)
[»] chr6 (8 HSPs)
chr6 (161-302)||(3117781-3117922)
chr6 (157-312)||(3254234-3254389)
chr6 (157-312)||(15944276-15944431)
chr6 (156-264)||(10542156-10542263)
chr6 (200-254)||(33697789-33697843)
chr6 (156-241)||(15132488-15132573)
chr6 (162-230)||(14663414-14663480)
chr6 (255-312)||(14663357-14663414)
[»] scaffold0172 (1 HSPs)
scaffold0172 (158-311)||(19196-19349)
[»] chr2 (20 HSPs)
chr2 (157-312)||(387453-387608)
chr2 (157-361)||(10524328-10524529)
chr2 (157-311)||(39338510-39338665)
chr2 (157-302)||(14405487-14405630)
chr2 (157-251)||(14436916-14437010)
chr2 (156-302)||(5254540-5254685)
chr2 (163-264)||(41877207-41877308)
chr2 (156-252)||(43816095-43816191)
chr2 (156-254)||(3745676-3745774)
chr2 (173-255)||(17116553-17116635)
chr2 (157-255)||(14106172-14106269)
chr2 (164-253)||(13512495-13512584)
chr2 (187-310)||(22888571-22888694)
chr2 (211-255)||(7874610-7874654)
chr2 (158-234)||(15457817-15457893)
chr2 (157-255)||(7461010-7461107)
chr2 (156-254)||(45311452-45311550)
chr2 (163-252)||(43248882-43248971)
chr2 (171-240)||(7455601-7455669)
chr2 (225-254)||(15457278-15457307)
[»] scaffold0434 (1 HSPs)
scaffold0434 (188-312)||(2353-2477)
[»] scaffold0085 (1 HSPs)
scaffold0085 (157-310)||(48614-48767)
[»] scaffold0343 (1 HSPs)
scaffold0343 (163-302)||(5991-6131)
[»] scaffold0068 (1 HSPs)
scaffold0068 (156-209)||(35472-35525)


Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 15 - 282
Target Start/End: Complemental strand, 7453161 - 7452895
Alignment:
Q  15 caaaggaaaacaaagagaacaaagagtgaaatgatacatgtaatgtaatagtttgatgatgttatagaaagagaggaataaggagaaaataaagtgttgg 114  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7453161 caaaggaaaacaaagagaacaaagagtgatatgatacatgtaatgtaatagtttgatgatgttatagaaagagaggaataaggagaaaataaagtgttgg 7453062  T
Q  115 acttggaaagatgtagaaaaacaaaatgtannnnnnnnnnngaatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaag 214  Q
    | ||||||||||||||||||||||||||||            ||||||||||||| |||||||||||||| ||||||||| ||||||||| | |||||||    
T  7453061 atttggaaagatgtagaaaaacaaaatgtatgttttttttt-aatcggcaaatattattaaacatcatccatgcaagacgcaaggtatggacaaatcaag 7452963  T
Q  215 atacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacatctagagattaatccac 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  7452962 atacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacatctggagattaacccac 7452895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 279 - 457
Target Start/End: Complemental strand, 7451682 - 7451505
Alignment:
Q  279 ccaccaaaacacatcaccacctaacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccgtccatcgtcacacacaagcacaagcacc 378  Q
    ||||||||| |||||||||||||||||| |||||        ||| ||||| |||||||| |||||||||| ||||||||||||||||||||||||||||    
T  7451682 ccaccaaaatacatcaccacctaacacaaactccaaaaaaa-caagcactgcaaacacggtatccaccaccttccatcgtcacacacaagcacaagcacc 7451584  T
Q  379 gtaaaaacaaaaggtatctaattattatagttgattaattatacacaatgaactgtcaattttgttgtgttgtatatgt 457  Q
     |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7451583 ttaaagacaaaaggtatctaattattatagttgattaattatacacaatgaactgtcaattttgttgtgttgtatatgt 7451505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 156 - 361
Target Start/End: Complemental strand, 18593675 - 18593471
Alignment:
Q  156 gaatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacc 255  Q
    |||||||||||||| ||||||| ||||||| |||||| | ||||||||| |||| ||||||| | |||||||||||||||||||||||||||||||||||    
T  18593675 gaatcggcaaatattattaaacgtcatccccgcaagatgcaaggtatggacgaaacaagataaatatggtgccgcatatagacggtacaccataaccacc 18593576  T
Q  256 taaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccgtccat 355  Q
    |||||||||  ||  |||| || || ||||||||||||||||||||||||| |||||        ||| |||||||||||||| ||||||||||| ||||    
T  18593575 taaaaacacccctgaagataaacccgccaaaacacatcaccacctaacacaaactcc-aaaaaaacaagcactgtaaacacggtatccaccaccgcccat 18593477  T
Q  356 cgtcac 361  Q
    ||||||    
T  18593476 cgtcac 18593471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 156 - 361
Target Start/End: Complemental strand, 29087904 - 29087707
Alignment:
Q  156 gaatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacc 255  Q
    ||||||| |||||| ||||||| |||||||||||||       |||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  29087904 gaatcggaaaatattattaaacgtcatccctgcaag-------gtatggacgaaacaagatacaaatggtgccgcatatagacggtacatcataaccacc 29087812  T
Q  256 taaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccgtccat 355  Q
    ||||||||   ||  |||| || |||||||||||||||| ||||||| |||||||||        ||| |||||||||||||| || |||||||| ||||    
T  29087811 taaaaacaaccctgaagataaacccaccaaaacacatcagcacctaaaacagactcc-aaaaaaacaagcactgtaaacacggtattcaccaccgcccat 29087713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 157 - 302
Target Start/End: Complemental strand, 34378531 - 34378386
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 256  Q
    ||||| ||||||| |||||||  |||| | |||||||| |||| |||| |||  | ||||||||||||||||||||||||||||||||||||||||| ||    
T  34378531 aatcgacaaatattattaaacgccatctccgcaagacgcaaggcatggacgagacgagatacaaatggtgccgcatatagacggtacaccataaccatct 34378432  T
Q  257 aaaaacacatctagagattaatccaccaaaacacatcaccacctaa 302  Q
    ||||||||  ||  |||| || |||| |||||||||||||||||||    
T  34378431 aaaaacacccctgaagataaacccacaaaaacacatcaccacctaa 34378386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 164 - 312
Target Start/End: Original strand, 5656749 - 5656897
Alignment:
Q  164 aaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 263  Q
    |||||| |||||||  |||| | |||||||| ||||||||  ||||  |||||||||||| ||||||||||||||||||||  |||||||||||||||||    
T  5656749 aaatattattaaacgccatcaccgcaagacgcaaggtatgaacgaaataagatacaaatgatgccgcatatagacggtacatgataaccacctaaaaaca 5656848  T
Q  264 catctagagattaatccaccaaaacacatcaccacctaacacagactcc 312  Q
    || ||  |||| |||||||||||||||  |||||||||| || ||||||    
T  5656849 caccttaagataaatccaccaaaacacgccaccacctaaaactgactcc 5656897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 156 - 312
Target Start/End: Original strand, 7161662 - 7161818
Alignment:
Q  156 gaatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacc 255  Q
    |||||||||||||| ||||||| || ||||  ||||||| ||| ||||| ||||  ||||||||||| |||  |||||||||||||||||||||| ||||    
T  7161662 gaatcggcaaatattattaaacgtcttccccacaagacgcaagatatggacgaaataagatacaaatagtgtagcatatagacggtacaccataatcacc 7161761  T
Q  256 taaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactcc 312  Q
    |||||||||  ||  | || || ||||||||||||||||| |||||| |||||||||    
T  7161762 taaaaacacccctgaatataaacccaccaaaacacatcactacctaaaacagactcc 7161818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 157 - 264
Target Start/End: Complemental strand, 698799 - 698692
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 256  Q
    |||| |||||||| |||||||  |||| ||||||||||||||||||||  |||  | |||||||||||||||||||||||||||||||| ||||||||||    
T  698799 aatcagcaaatattattaaacgacatctctgcaagacgtaaggtatggatgaaatatgatacaaatggtgccgcatatagacggtacactataaccacct 698700  T
Q  257 aaaaacac 264  Q
    ||||||||    
T  698699 aaaaacac 698692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 157 - 247
Target Start/End: Original strand, 18313303 - 18313393
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacacca 247  Q
    |||||| |||||| ||||||| |||| |||| |||||| |||||||||  ||| |||||| ||||||||||||||||||||||||||||||    
T  18313303 aatcggtaaatattattaaacgtcattcctgtaagacgcaaggtatggatgaaacaagatgcaaatggtgccgcatatagacggtacacca 18313393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 41250896 - 41250944
Alignment:
Q  211 caagatacaaatggtgccgcatatagacggtacaccataaccacctaaa 259  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  41250896 caagatataaatggtgccgcatatagacggtacaccataaccacgtaaa 41250944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 18255098 - 18255192
Alignment:
Q  156 gaatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataa 250  Q
    ||||||||||||||  |||||| | ||||| | |||| | | ||||| | |||| |||||||||||| ||||||||||||||||||||| |||||    
T  18255098 gaatcggcaaatattgttaaacgttatccccgtaagatgcagggtatagacgaaacaagatacaaatagtgccgcatatagacggtacatcataa 18255192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 312
Target Start/End: Original strand, 18313406 - 18313448
Alignment:
Q  270 gagattaatccaccaaaacacatcaccacctaacacagactcc 312  Q
    ||||| || |||||||||||||||||||||||| |||||||||    
T  18313406 gagataaacccaccaaaacacatcaccacctaaaacagactcc 18313448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 361
Target Start/End: Complemental strand, 34378359 - 34378326
Alignment:
Q  328 tgtaaacacggcatccaccaccgtccatcgtcac 361  Q
    ||||||||||| ||||||||||||||||||||||    
T  34378359 tgtaaacacggtatccaccaccgtccatcgtcac 34378326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 3e-52; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 157 - 361
Target Start/End: Original strand, 30685573 - 30685777
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 256  Q
    ||||||||||||| ||||||| ||||||| |||||||| ||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  30685573 aatcggcaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagatggtacaccataaccacct 30685672  T
Q  257 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccgtccatc 356  Q
    ||||||||  ||  |||| || |||||||||||||||||||||||| |||||||||        ||| || ||||||||||| ||||||||||| |||||    
T  30685673 aaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactccaacaaaaacaagcaatgtaaacacggtatccaccaccgcccatc 30685772  T
Q  357 gtcac 361  Q
     ||||    
T  30685773 ttcac 30685777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 157 - 311
Target Start/End: Original strand, 40216155 - 40216308
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 256  Q
    |||| |||||||| ||||||| ||||||  ||||||||  || ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  40216155 aatcagcaaatattattaaacgtcatcctcgcaagacgccagatatggacgaatcaagatacaaatggtgccgcatatagacggtacatcataaccacct 40216254  T
Q  257 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactc 311  Q
    |||||||||||| |||||||| ||||| |||||||||| |||||||||| |||||    
T  40216255 aaaaacacatctggagattaacccaccgaaacacatca-cacctaacacggactc 40216308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 156 - 361
Target Start/End: Original strand, 24449579 - 24449783
Alignment:
Q  156 gaatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacc 255  Q
    |||| ||||||||| |||||||  |||||| |||||| | ||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||     
T  24449579 gaattggcaaatattattaaacgccatccc-gcaagatgcaaggtatggacgaaacaagatacaaatggtgctgcatatagacggtacaccataaccaca 24449677  T
Q  256 taaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccgtccat 355  Q
    |||||||||  |||||||| ||  |||||||||||||||||||||||   |||||||        ||| |||||||||||||| ||||||||||| ||||    
T  24449678 taaaaacacccctagagataaacacaccaaaacacatcaccacctaaagtagactccaaaaaaaacaagcactgtaaacacggtatccaccaccgcccat 24449777  T
Q  356 cgtcac 361  Q
    ||||||    
T  24449778 cgtcac 24449783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 156 - 361
Target Start/End: Original strand, 24684141 - 24684344
Alignment:
Q  156 gaatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacc 255  Q
    |||||||||||||| |||| |  |||||||||||||| | ||||||||  | || |||||||||||||||||| ||||||||||||||||||||| ||||    
T  24684141 gaatcggcaaatattattatatgtcatccctgcaagatgcaaggtatgaacaaa-caagatacaaatggtgccacatatagacggtacaccataatcacc 24684239  T
Q  256 taaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccgtccat 355  Q
    |||||||||  ||  |||| || |||||||||||||||||||||||| ||| |||||        ||||| |||||||||||  ||||||||||| ||||    
T  24684240 taaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacaaactcc-aaaaaaacaaactctgtaaacacgatatccaccaccgcccat 24684338  T
Q  356 cgtcac 361  Q
    ||||||    
T  24684339 cgtcac 24684344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 157 - 302
Target Start/End: Complemental strand, 7002619 - 7002476
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 256  Q
    ||||||||||||| ||||||| ||||||  |||| | ||||||||||| |||| ||||||||||| ||||||||||||| |||||||||||||||||| |    
T  7002619 aatcggcaaatattattaaacgtcatcctcgcaaaatgtaaggtatggacgaaacaagatacaaaaggtgccgcatataaacggtacaccataaccactt 7002520  T
Q  257 aaaaacacatctagagattaatccaccaaaacacatcaccacctaa 302  Q
    |||||  |  |||||||| || ||||||||||||||||||||||||    
T  7002519 aaaaaacc--ctagagataaacccaccaaaacacatcaccacctaa 7002476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 156 - 302
Target Start/End: Original strand, 31584688 - 31584833
Alignment:
Q  156 gaatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacc 255  Q
    |||||||||||||| |||||||| |||||  |||||||| |||||||| | ||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  31584688 gaatcggcaaatattattaaacaccatcctcgcaagacgcaaggtatgac-gaaacaagatacaaatggtgccgcatatagacgatacaccataaccacc 31584786  T
Q  256 taaaaacacatctagagattaatccaccaaaacacatcaccacctaa 302  Q
    |||||||||  ||  |||| || |||||||||||  |||||||||||    
T  31584787 taaaaacacccctgaagataaacccaccaaaacatgtcaccacctaa 31584833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 196 - 361
Target Start/End: Original strand, 5389111 - 5389275
Alignment:
Q  196 aaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacatctagagattaatccaccaaaacacatcac 295  Q
    ||||||||| ||||  ||||||||||||||||||||||||||||| |||| ||||||||||||||||||  |||||||| || | |||||||||||||||    
T  5389111 aaggtatggacgaaataagatacaaatggtgccgcatatagacggcacactataaccacctaaaaacacccctagagataaaccaaccaaaacacatcac 5389210  T
Q  296 cacctaacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccgtccatcgtcac 361  Q
    ||||||| ||| |||||        ||| ||| |||||||||| ||||||||||| ||||||||||    
T  5389211 cacctaaaacaaactcc-caaaaaacaagcaccgtaaacacggtatccaccaccgcccatcgtcac 5389275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 164 - 309
Target Start/End: Original strand, 46814121 - 46814266
Alignment:
Q  164 aaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 263  Q
    |||||| |||||||  |||||  |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| || ||      
T  46814121 aaatattattaaacgccatcctcgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccaccaaacaaag 46814220  T
Q  264 catctagagattaatccaccaaaacacatcaccacctaacacagac 309  Q
    |  ||  |||| || | |||||||||||||||||||||| ||||||    
T  46814221 cccctgaagataaacctaccaaaacacatcaccacctaagacagac 46814266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 187 - 361
Target Start/End: Complemental strand, 5459562 - 5459389
Alignment:
Q  187 gcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacatctagagattaatccaccaaa 286  Q
    |||| ||| ||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||  ||  |||| ||  |||||||    
T  5459562 gcaatacgcaaggtatggacgaagcaacatacaaatggtgccgcatatagacggtacaccataaccacctaaaaatacccctgaagataaactcaccaaa 5459463  T
Q  287 acacatcaccacctaacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccgtccatcgtcac 361  Q
    ||||||||| || ||| ||| |||||        ||| |||||||||||||| ||||||||||| ||||||||||    
T  5459462 acacatcactacttaaaacaaactcc-aaaaaaacaatcactgtaaacacggtatccaccaccgcccatcgtcac 5459389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 157 - 301
Target Start/End: Complemental strand, 6804969 - 6804825
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 256  Q
    |||||| |||||| |||||||   ||||| |||||||| ||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  6804969 aatcggtaaatattattaaacgctatccccgcaagacgcaaggtatggacgaaa-aagatacaaatggtgccgcatatagacggtacaccataaccacct 6804871  T
Q  257 aaaaacacatctagagattaat-ccaccaaaacacatcaccaccta 301  Q
    ||||| | | |  |||  |||| |||||||||||||||||||||||    
T  6804870 aaaaaaaaaccccgaggataatcccaccaaaacacatcaccaccta 6804825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 156 - 264
Target Start/End: Complemental strand, 41920890 - 41920782
Alignment:
Q  156 gaatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacc 255  Q
    |||||| ||||||| ||||||| ||||| | |||||||||||||||||| ||||  || |||||||| |||| |||||||||||||||||| ||||||||    
T  41920890 gaatcgacaaatattattaaacgtcatctccgcaagacgtaaggtatggacgaaataaaatacaaattgtgctgcatatagacggtacaccgtaaccacc 41920791  T
Q  256 taaaaacac 264  Q
    |||||||||    
T  41920790 taaaaacac 41920782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 211 - 312
Target Start/End: Original strand, 46692522 - 46692624
Alignment:
Q  211 caagatacaaatggtgccgcatatagacggtacaccataaccacct-aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagac 309  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||  ||  |||| || || ||||||||||||||||||||| ||| ||    
T  46692522 caagataaaaatggtgccgcataaagacggtacaccataaccacctaaaaaacacccctgaagataaaccctccaaaacacatcaccacctaaaacaaac 46692621  T
Q  310 tcc 312  Q
    |||    
T  46692622 tcc 46692624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 157 - 254
Target Start/End: Complemental strand, 14320755 - 14320658
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccac 254  Q
    ||||||||||||| ||||||| |||||||  ||||| | ||||||||| | || | | |||||||||||| |||||||||||||||||||||||||||    
T  14320755 aatcggcaaatattattaaacgtcatccccacaagatgcaaggtatggacaaaaccaaatacaaatggtgtcgcatatagacggtacaccataaccac 14320658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 206 - 302
Target Start/End: Complemental strand, 24659313 - 24659217
Alignment:
Q  206 cgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacatctagagattaatccaccaaaacacatcaccacctaa 302  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| || ||  |  ||  |||| || |||||||||||||| |||||||||    
T  24659313 cgaaacaagatacaaatggtgccgcatatagacggtacaccataaccaccaaacaaagcccctgaagataaacccaccaaaacacataaccacctaa 24659217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 252
Target Start/End: Original strand, 27031496 - 27031585
Alignment:
Q  163 caaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataacc 252  Q
    ||||||| ||||||| ||||||  |||||||| ||| ||||| || | ||| ||| ||||||||||||||||| ||||||||||||||||    
T  27031496 caaatattattaaacgtcatcctcgcaagacgcaagatatggacggaacaatatataaatggtgccgcatatatacggtacaccataacc 27031585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 2e-50; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 156 - 361
Target Start/End: Complemental strand, 47236131 - 47235926
Alignment:
Q  156 gaatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacc 255  Q
    ||||| |||||||| |||||||  ||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||| |    
T  47236131 gaatcagcaaatattattaaacgccatccctgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtataccataaccatc 47236032  T
Q  256 taaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccgtccat 355  Q
    |||||||||  || ||||| || ||||||||| |||||||||||||| |||||||          ||| |||||||||||||| ||||||||||||||||    
T  47236031 taaaaacacccctggagataaacccaccaaaatacatcaccacctaaaacagacttaaaaaaaaacaagcactgtaaacacggtatccaccaccgtccat 47235932  T
Q  356 cgtcac 361  Q
    ||||||    
T  47235931 cgtcac 47235926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 157 - 312
Target Start/End: Complemental strand, 45164285 - 45164131
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 256  Q
    ||||||||||||| ||||||||| ||||| |||||| | ||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||    
T  45164285 aatcggcaaatattattaaacattatccccgcaagatgcaaggtatggactaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 45164186  T
Q  257 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactcc 312  Q
    ||||||||  || ||||| || |||||||||||||||||||||||| | |||||||    
T  45164185 aaaaacac-cctggagataaacccaccaaaacacatcaccacctaaaatagactcc 45164131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 157 - 302
Target Start/End: Original strand, 2392152 - 2392297
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 256  Q
    |||||| |||||| ||||||| ||||||| |||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2392152 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 2392251  T
Q  257 aaaaacacatctagagattaatccaccaaaacacatcaccacctaa 302  Q
    ||||||||  ||  | || || |||||||||||||||||| |||||    
T  2392252 aaaaacacccctgaaaataaacccaccaaaacacatcaccgcctaa 2392297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 157 - 302
Target Start/End: Original strand, 2393915 - 2394060
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 256  Q
    |||||| |||||| ||||||| ||||||| |||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2393915 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 2394014  T
Q  257 aaaaacacatctagagattaatccaccaaaacacatcaccacctaa 302  Q
    ||||||||  ||  | || || |||||||||||||||||| |||||    
T  2394015 aaaaacacccctgaaaataaacccaccaaaacacatcaccgcctaa 2394060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 156 - 361
Target Start/End: Original strand, 34475406 - 34475609
Alignment:
Q  156 gaatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacc 255  Q
    ||||||||| |||| ||||||| ||||||| |||||||| | ||||||  |||| |||||||||||||||||| ||||||||||||| ||||||||||||    
T  34475406 gaatcggcacatattattaaacgtcatccccgcaagacgcagggtatgaacgaaacaagatacaaatggtgccccatatagacggtataccataaccacc 34475505  T
Q  256 taaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccgtccat 355  Q
    ||| |||||  || ||||| ||  ||||||||||||||||||||||| |||||||||        ||| || ||||||||||| ||||||||||| ||||    
T  34475506 taagaacacccctggagataaactcaccaaaacacatcaccacctaaaacagactcc--aaaaaacaagcaatgtaaacacggtatccaccaccgcccat 34475603  T
Q  356 cgtcac 361  Q
    ||||||    
T  34475604 cgtcac 34475609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 156 - 312
Target Start/End: Complemental strand, 31483313 - 31483157
Alignment:
Q  156 gaatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacc 255  Q
    |||||||||||||| |||||||| ||||||  ||||||| ||||||||  | || ||||||||||||||||| |||||||||||||||||||||||||||    
T  31483313 gaatcggcaaatattattaaacaccatccccacaagacgcaaggtatgaacaaaacaagatacaaatggtgctgcatatagacggtacaccataaccacc 31483214  T
Q  256 taaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactcc 312  Q
    |||||||||  || ||||| ||  ||||||||||||||||| ||||| ||| |||||    
T  31483213 taaaaacacccctggagataaactcaccaaaacacatcaccgcctaaaacaaactcc 31483157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 157 - 312
Target Start/End: Complemental strand, 19176938 - 19176783
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 256  Q
    ||||||||||||| ||||||| |||| ||||||||||| || |||||| |||| || |||||||||||||||||||||||||||||||||||||| ||||    
T  19176938 aatcggcaaatattattaaacgtcattcctgcaagacgcaaagtatggacgaaacatgatacaaatggtgccgcatatagacggtacaccataacgacct 19176839  T
Q  257 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactcc 312  Q
    ||||| ||  ||  |||  || |||||||||||||| ||||||||| |||||||||    
T  19176838 aaaaatacccctgaagacaaacccaccaaaacacataaccacctaaaacagactcc 19176783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 30352118 - 30352230
Alignment:
Q  187 gcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacatctagagattaatccaccaaa 286  Q
    |||||||| ||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||  |||| |  ||||||||    
T  30352118 gcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagaaggtacaccataaccacctaaaaacacccctgaagataagcccaccaaa 30352217  T
Q  287 acacatcaccacc 299  Q
    |||||||||||||    
T  30352218 acacatcaccacc 30352230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 157 - 361
Target Start/End: Complemental strand, 53248332 - 53248129
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 256  Q
    ||||| ||||||| ||||||| ||||||| ||||| |||||||||||| | || |||||||||||||||| |||||||||   |||||||||||||| ||    
T  53248332 aatcgacaaatattattaaacgtcatccccgcaaggcgtaaggtatggacaaaacaagatacaaatggtgtcgcatataggttgtacaccataaccatct 53248233  T
Q  257 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccgtccatc 356  Q
    |||||||   ||  |||| |  |||| ||||||||||||||||||| |||||||||        ||| |||||||||||||| | ||||||||| |||||    
T  53248232 aaaaacaaccctgaagataaccccacaaaaacacatcaccacctaaaacagactcc-aaaaaaacaagcactgtaaacacggtaaccaccaccgcccatc 53248134  T
Q  357 gtcac 361  Q
    |||||    
T  53248133 gtcac 53248129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 164 - 302
Target Start/End: Complemental strand, 17551382 - 17551244
Alignment:
Q  164 aaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 263  Q
    |||||| ||||||| | |||||||||||| | | ||||||  |||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17551382 aaatattattaaacgttatccctgcaagatgcagggtatgaacgaaacaaaatacaaatggtgccgcatatagactgtacaccataaccacctaaaaaca 17551283  T
Q  264 catctagagattaatccaccaaaacacatcaccacctaa 302  Q
    | |||  | |  || ||||||||||||||||||||||||    
T  17551282 cctctgaaaaaaaacccaccaaaacacatcaccacctaa 17551244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 163 - 309
Target Start/End: Original strand, 40023224 - 40023370
Alignment:
Q  163 caaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaac 262  Q
    ||||||| ||||||||||||||| |||||||| |  |||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||| || ||     
T  40023224 caaatattattaaacatcatccccgcaagacgcattgtatggacgaaacaagatacaaatgatgccgcatatagacggtacaccataaccaccaaacaaa 40023323  T
Q  263 acatctagagattaatccaccaaaacacatcaccacctaacacagac 309  Q
     |  ||  |||| || ||| |||||||||||||||||||| ||||||    
T  40023324 gcccctgaagataaacccatcaaaacacatcaccacctaagacagac 40023370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 157 - 258
Target Start/End: Complemental strand, 21343779 - 21343678
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 256  Q
    ||||| ||||||| ||||||| ||||||| |||||||  ||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  21343779 aatcgacaaatattattaaacgtcatcccggcaagacacaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacatcataaccacct 21343680  T
Q  257 aa 258  Q
    ||    
T  21343679 aa 21343678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 184 - 312
Target Start/End: Complemental strand, 43012782 - 43012654
Alignment:
Q  184 cctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacatctagagattaatccacc 283  Q
    ||||||||||| ||||||||  |||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||  ||  |||  || |||||    
T  43012782 cctgcaagacgcaaggtatgaacgaaacaatatacaaatggtgccgcatatagacgatacaccataaccacctaaaaacactcctgaagaaaaacccacc 43012683  T
Q  284 aaaacacatcaccacctaacacagactcc 312  Q
    |||| ||||||||| |||| |||||||||    
T  43012682 aaaagacatcaccatctaaaacagactcc 43012654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 157 - 255
Target Start/End: Original strand, 23327997 - 23328095
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacc 255  Q
    |||| |||||||| |||||||   |||||||||| ||| ||||||||| |||| ||||||| ||||||||||||||||| |||||||||||||||||||    
T  23327997 aatcagcaaatattattaaacgctatccctgcaatacgcaaggtatggacgaaacaagatataaatggtgccgcatatatacggtacaccataaccacc 23328095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 156 - 253
Target Start/End: Original strand, 50305222 - 50305319
Alignment:
Q  156 gaatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataacca 253  Q
    ||||| |||||||| |||||||  ||| || |||||||| ||||||||| || | |||||||||||||||| ||||||||||||||||||||||||||    
T  50305222 gaatcagcaaatattattaaacgccattcccgcaagacgcaaggtatggacggaacaagatacaaatggtgtcgcatatagacggtacaccataacca 50305319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 196 - 298
Target Start/End: Original strand, 9583741 - 9583843
Alignment:
Q  196 aaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacatctagagattaatccaccaaaacacatcac 295  Q
    ||||||| | |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||   |  | || || |||||||||||||||||    
T  9583741 aaggtatagacgaaacaagatacaaatggtgccgcatatagacgatacaccataaccacctaaaaatacccttgaaaataaacccaccaaaacacatcac 9583840  T
Q  296 cac 298  Q
    |||    
T  9583841 cac 9583843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 157 - 252
Target Start/End: Original strand, 25506719 - 25506814
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataacc 252  Q
    ||||| ||||||| ||||||||||||||| |||||||  ||| |||   | || ||| ||||||||||||||||||||||||||||||||||||||    
T  25506719 aatcgacaaatattattaaacatcatccccgcaagacccaagatataaacaaaacaatatacaaatggtgccgcatatagacggtacaccataacc 25506814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 157 - 255
Target Start/End: Complemental strand, 45399217 - 45399119
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacc 255  Q
    |||| |||||||| |||||||  |||| | | ||||||  |||||||  |||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  45399217 aatcagcaaatattattaaacgacatctccgaaagacgcgaggtatgaacgaaacaagatacaaacggtgccgcatatagacggtacaccataaccacc 45399119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 157 - 254
Target Start/End: Original strand, 4463734 - 4463831
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccac 254  Q
    ||||||||||||| ||||||| ||| |||  ||||||| |||  |||| |||| ||| | ||||||||||||||||||||||||| ||||||||||||    
T  4463734 aatcggcaaatattattaaacgtcaaccccacaagacgcaagacatggacgaaacaacacacaaatggtgccgcatatagacggtgcaccataaccac 4463831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 163 - 255
Target Start/End: Complemental strand, 50560070 - 50559978
Alignment:
Q  163 caaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacc 255  Q
    ||||||| ||||||| ||||||  |||| ||| ||| ||||| |||| ||||||||||| | ||||||| ||||||||| |||||||||||||    
T  50560070 caaatattattaaacgtcatcctcgcaatacgcaagatatggacgaaacaagatacaaaagatgccgcacatagacggtgcaccataaccacc 50559978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 159 - 264
Target Start/End: Complemental strand, 37158735 - 37158629
Alignment:
Q  159 tcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatat-agacggt-acaccataaccacct 256  Q
    ||||||||||| || ||||  |||||| |||||||| ||||||||| |||| || ||||||||||||||||||||| | | ||| |||| ||||||||||    
T  37158735 tcggcaaatattat-aaacgccatccccgcaagacgcaaggtatggacgaaacaggatacaaatggtgccgcatataatatggtaacactataaccacct 37158637  T
Q  257 aaaaacac 264  Q
    ||||||||    
T  37158636 aaaaacac 37158629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 47439347 - 47439284
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaa 220  Q
    ||||||||||||| | ||||| |||||||| |||||| |||||||||| |||| ||||||||||    
T  47439347 aatcggcaaatattactaaacgtcatccctacaagacataaggtatggacgaaacaagatacaa 47439284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 361
Target Start/End: Original strand, 2392323 - 2392359
Alignment:
Q  325 cactgtaaacacggcatccaccaccgtccatcgtcac 361  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  2392323 cactgtaaacacggtatccaccaccgcccatcgtcac 2392359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 361
Target Start/End: Original strand, 2394087 - 2394123
Alignment:
Q  325 cactgtaaacacggcatccaccaccgtccatcgtcac 361  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  2394087 cactgtaaacacggtatccaccaccgcccatcgtcac 2394123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 3e-49; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 157 - 361
Target Start/End: Complemental strand, 20138858 - 20138655
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 256  Q
    |||||| |||||| |||||||  |||||| |||||||| || |||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  20138858 aatcggtaaatattattaaacgccatccccgcaagacgcaaagtatggacgaaacaagatacaaatggtgccgcatatagatggtacaccataaccacct 20138759  T
Q  257 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccgtccatc 356  Q
    ||||||||   | ||||| || |||||||||||||||||||||||| |||||||||        ||| |||||||||||||| |||||||||||||||||    
T  20138758 aaaaacacccatggagataaacccaccaaaacacatcaccacctaaaacagactcc-aaaaaatcaagcactgtaaacacggtatccaccaccgtccatc 20138660  T
Q  357 gtcac 361  Q
    |||||    
T  20138659 gtcac 20138655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 157 - 358
Target Start/End: Complemental strand, 36631254 - 36631055
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 256  Q
    |||||| |||||| |||| ||  ||||||||||||||| ||||||||   ||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  36631254 aatcggaaaatattattatacgccatccctgcaagacgcaaggtatgaa-gaaacaagatacaaatggtgccgcatatagacggtacaccataatcacct 36631156  T
Q  257 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccgtccatc 356  Q
    ||||||||  ||  |||| || |||||||||||||||||||||||| |||||||||        |||||||||||||||||| ||||||||||| |||||    
T  36631155 aaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacagactcc-aaaaaaacaaacactgtaaacacggtatccaccaccgcccatc 36631057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 157 - 312
Target Start/End: Original strand, 12897925 - 12898080
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 256  Q
    ||||||||||||| ||||||| ||||||| |||||| | ||| ||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  12897925 aatcggcaaatattattaaacgtcatccccgcaagatgcaagatatggacgaaacaagatacaaatggtgccgcatatagacggtacaccattaccacct 12898024  T
Q  257 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactcc 312  Q
    ||||||||  ||  |||| || |||||||||||||||||||||||| ||| |||||    
T  12898025 aaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacaaactcc 12898080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 161 - 361
Target Start/End: Original strand, 16457128 - 16457328
Alignment:
Q  161 ggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaa 260  Q
    ||||||||| ||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  16457128 ggcaaatattattaaacgtcatccctgcaagacgtaaggtatggacgaaacaagatacaaatggtgccacatatagacggtacaccataaccacctaaaa 16457227  T
Q  261 acacatctagagattaatc-caccaaaacacatcaccacct-aacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccgtccatcgt 358  Q
    |  |  || |||  ||||| ||||||||||||||||||||| || | |||||          ||| |||||||||||||| |||||||||||||||||||    
T  16457228 aatc--cttgaggataatcgcaccaaaacacatcaccacctaaaaaaagactaaaaaaaaaacaagcactgtaaacacggtatccaccaccgtccatcgt 16457325  T
Q  359 cac 361  Q
    |||    
T  16457326 cac 16457328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 157 - 311
Target Start/End: Original strand, 31207011 - 31207165
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 256  Q
    ||||||||||||| |||||||  |||||  |||||||| ||||||||| |||| ||||||||||||||||||| ||||| ||||||||||||||||||||    
T  31207011 aatcggcaaatattattaaacgccatcctcgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgtatataaacggtacaccataaccacct 31207110  T
Q  257 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactc 311  Q
    ||||||||  ||  |||| ||  ||||||||||||||||||||||| ||||||||    
T  31207111 aaaaacactcctgaagataaactcaccaaaacacatcaccacctaaaacagactc 31207165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 157 - 312
Target Start/End: Original strand, 32065934 - 32066088
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 256  Q
    ||||||||||||| |||||||  |||| | |||||| | ||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  32065934 aatcggcaaatattattaaacgccatcaccgcaagatgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtaca-cataaccacct 32066032  T
Q  257 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactcc 312  Q
    ||||||||  ||  |||| || |||||||||||||||||||||||| ||| |||||    
T  32066033 aaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacaaactcc 32066088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 188 - 310
Target Start/End: Complemental strand, 27889247 - 27889125
Alignment:
Q  188 caagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacatctagagattaatccaccaaaa 287  Q
    ||||||| ||||||| | |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||  || ||||| || |||||||||    
T  27889247 caagacgcaaggtattgacgaaacaagatacaaatggtgccgcatatagactgtacaccataaccacctaaaaacacccctggagataaacccaccaaaa 27889148  T
Q  288 cacatcaccacctaacacagact 310  Q
    ||||||||||||||| |||||||    
T  27889147 cacatcaccacctaaaacagact 27889125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 188 - 310
Target Start/End: Complemental strand, 27947905 - 27947783
Alignment:
Q  188 caagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacatctagagattaatccaccaaaa 287  Q
    ||||||| ||||||| | |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||  || ||||| || |||||||||    
T  27947905 caagacgcaaggtattgacgaaacaagatacaaatggtgccgcatatagactgtacaccataaccacctaaaaacacccctggagataaacccaccaaaa 27947806  T
Q  288 cacatcaccacctaacacagact 310  Q
    ||||||||||||||| |||||||    
T  27947805 cacatcaccacctaaaacagact 27947783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 157 - 302
Target Start/End: Complemental strand, 9519938 - 9519793
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 256  Q
    ||||| ||||||| |||||||| ||||||| ||||||| ||||||||| |||| |||||||||||||||||||||||||||| ||||| |||||||||||    
T  9519938 aatcgacaaatattattaaacaccatccctacaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacagtacatcataaccacct 9519839  T
Q  257 aaaaacacatctagagattaatccaccaaaacacatcaccacctaa 302  Q
    ||||||||  ||   ||| || |||||||||||| |||||||||||    
T  9519838 aaaaacacccctgatgataaacccaccaaaacacgtcaccacctaa 9519793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 157 - 302
Target Start/End: Complemental strand, 22774053 - 22773908
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 256  Q
    ||||||||||||| |||||||  |||||| |||||||| ||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||| ||    
T  22774053 aatcggcaaatattattaaacgccatccccgcaagacgcaaggtatggacgaaactagatacaaatggtgccgcatatagacggtacaccataaccatct 22773954  T
Q  257 aaaaacacatctagagattaatccaccaaaacacatcaccacctaa 302  Q
    ||||||||   |  |||| || ||||||||||| ||||||||||||    
T  22773953 aaaaacaccagtgaagataaacccaccaaaacatatcaccacctaa 22773908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 156 - 309
Target Start/End: Original strand, 15821025 - 15821177
Alignment:
Q  156 gaatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacc 255  Q
    ||||| |||||||| ||||||| |||||| ||||||||| ||||||||| || | |||||||||||||||||||||||||||||||| ||||||||||||    
T  15821025 gaatcagcaaatattattaaacgtcatcc-tgcaagacgcaaggtatggacggaacaagatacaaatggtgccgcatatagacggtataccataaccacc 15821123  T
Q  256 taaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagac 309  Q
     || || ||  ||  |||| || |||||||||||||||||||||||| ||||||    
T  15821124 aaataaaacccctgaagataaaaccaccaaaacacatcaccacctaagacagac 15821177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 161 - 302
Target Start/End: Original strand, 37986508 - 37986649
Alignment:
Q  161 ggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaa 260  Q
    ||||||||| ||||||  ||||||| |||||||| |||| | || |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37986508 ggcaaatattattaaatgtcatccccgcaagacgcaaggcacggacgaaacaagatacaaatggtgctgcatatagacggtacaccataaccacctaaaa 37986607  T
Q  261 acacatctagagattaatccaccaaaacacatcaccacctaa 302  Q
    ||||  ||| |||| || |||  |||||||||||||||||||    
T  37986608 acacccctaaagataaacccattaaaacacatcaccacctaa 37986649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 157 - 361
Target Start/End: Original strand, 24995044 - 24995247
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 256  Q
    |||| |||||||| ||| |||  |||||| | |||||| ||||||||| |||| |||||||||||||||||||| ||||||| |||||||||||||||||    
T  24995044 aatcagcaaatattattgaacgccatccccgtaagacgcaaggtatggacgaaacaagatacaaatggtgccgcttatagacagtacaccataaccacct 24995143  T
Q  257 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccgtccatc 356  Q
    ||||||||  ||  |||| || |||||||||||  ||||||||||| |||  ||||        ||| || ||||||||||| ||||||||||| |||||    
T  24995144 aaaaacacccctgaagataaacccaccaaaacatgtcaccacctaaaacaatctcc-aaaaaaacaagcattgtaaacacggtatccaccaccgcccatc 24995242  T
Q  357 gtcac 361  Q
    |||||    
T  24995243 gtcac 24995247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 158 - 311
Target Start/End: Complemental strand, 35821685 - 35821534
Alignment:
Q  158 atcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccaccta 257  Q
    |||||||||||| |||||||  |||| | |||||||| |||| |||| |||| || |||||||||| |||||||||||||||||||||||||||||| ||    
T  35821685 atcggcaaatattattaaacgccatctccgcaagacgcaagg-atggacgaaacatgatacaaatgatgccgcatatagacggtacaccataaccactta 35821587  T
Q  258 aaaacacatctagagattaatc-caccaaaacacatcaccacctaacacagactc 311  Q
    |||| || ||| |||  ||||| |||||||  |||||||||||||| ||||||||    
T  35821586 aaaa-acctct-gaggataatctcaccaaactacatcaccacctaaaacagactc 35821534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 212 - 312
Target Start/End: Original strand, 34388711 - 34388811
Alignment:
Q  212 aagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactc 311  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||   |  |||| || ||| |||||||||||||||||||| ||| ||||    
T  34388711 aagatacaaatagtgctgcatatagacggtacaccataaccacctaaaaacacccgtgaagataaacccagcaaaacacatcaccacctaaaacaaactc 34388810  T
Q  312 c 312  Q
    |    
T  34388811 c 34388811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 160 - 252
Target Start/End: Original strand, 35815896 - 35815988
Alignment:
Q  160 cggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataacc 252  Q
    |||||||||| |||||||  |||||  |||| ||| ||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||    
T  35815896 cggcaaatattattaaacgccatcctcgcaaaacgcaaggtatggacgaaacaagatacaaatggtgccacatatagacggtacaccataacc 35815988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 215 - 310
Target Start/End: Original strand, 41893112 - 41893206
Alignment:
Q  215 atacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagact 310  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| |   | || ||| |||||||||||||||||||| |||||| |||||||    
T  41893112 atacaaatggtgtcgcatatagacggtacaccataaccacctaaaaaaaacccgag-gataaatccaccaaaacacatcactacctaaaacagact 41893206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 157 - 255
Target Start/End: Complemental strand, 3584170 - 3584071
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaa-gatacaaatggtgccgcatatagacggtacaccataaccacc 255  Q
    |||| |||||||| |||||||  ||||||  |||||||  |||||||  |||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  3584170 aatcagcaaatattattaaacgccatccccacaagacgcgaggtatgaacgaaacaaagatacaaatggtgccgcatatagacggtacaccataaccacc 3584071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 302
Target Start/End: Original strand, 38577441 - 38577580
Alignment:
Q  163 caaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaac 262  Q
    ||||||| ||||||| ||||  | |||||| |||| |||||  |||| ||| ||||||||| ||||||||||||||||||||  ||||| ||| || ||     
T  38577441 caaatattattaaacgtcatttccgcaagatgtaatgtatgaacgaaacaatatacaaatgatgccgcatatagacggtacaaaataactaccaaacaaa 38577540  T
Q  263 acatctagagattaatccaccaaaacacatcaccacctaa 302  Q
    | |  |  |||| || ||||||||||||||||||||||||    
T  38577541 atacatgaagataaacccaccaaaacacatcaccacctaa 38577580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 156 - 250
Target Start/End: Complemental strand, 13538418 - 13538324
Alignment:
Q  156 gaatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataa 250  Q
    ||||| |||||||| |||||||  |||| |  ||||||| ||||||||| ||||  || ||||||||||| |||||||||||||||||| |||||    
T  13538418 gaatcagcaaatattattaaacgccatctccacaagacgcaaggtatggacgaaagaatatacaaatggtaccgcatatagacggtacatcataa 13538324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 13686056 - 13686150
Alignment:
Q  156 gaatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataa 250  Q
    ||||| |||||||| |||||||  |||| |  ||||||| ||||||||| ||||  || ||||||||||| |||||||||||||||||| |||||    
T  13686056 gaatcagcaaatattattaaacgccatctccacaagacgcaaggtatggacgaaagaatatacaaatggtaccgcatatagacggtacatcataa 13686150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 156 - 217
Target Start/End: Complemental strand, 9659535 - 9659474
Alignment:
Q  156 gaatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagata 217  Q
    |||||||||||||| ||||||| ||||||| |||||||| ||||||||| |||| |||||||    
T  9659535 gaatcggcaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagata 9659474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 10837941 - 10837984
Alignment:
Q  212 aagatacaaatggtgccgcatatagacggtacaccataaccacc 255  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||    
T  10837941 aagatgcaaatcgtgccgcatatagacggtacaccataaccacc 10837984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 361
Target Start/End: Complemental strand, 9519764 - 9519728
Alignment:
Q  325 cactgtaaacacggcatccaccaccgtccatcgtcac 361  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  9519764 cactgtaaacacggtatccaccaccgcccatcgtcac 9519728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 3e-49; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 157 - 361
Target Start/End: Original strand, 44353213 - 44353416
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 256  Q
    |||||| |||||| |||||||  |||||| |||||||| || |||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  44353213 aatcggtaaatattattaaacgccatccccgcaagacgcaaagtatggacgaaacaagatacaaatggtgccgcatatagatggtacaccataaccacct 44353312  T
Q  257 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccgtccatc 356  Q
    ||||||||   | ||||| || |||||||||||||||||||||||| |||||||||        ||| |||||||||||||| |||||||||||||||||    
T  44353313 aaaaacacccatggagataaacccaccaaaacacatcaccacctaaaacagactcc-aaaaaatcaagcactgtaaacacggtatccaccaccgtccatc 44353411  T
Q  357 gtcac 361  Q
    |||||    
T  44353412 gtcac 44353416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 156 - 361
Target Start/End: Original strand, 31971783 - 31971987
Alignment:
Q  156 gaatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacc 255  Q
    |||||||||||||| |||||||  |||||| |||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31971783 gaatcggcaaatattattaaacgccatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacc 31971882  T
Q  256 taaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccgtccat 355  Q
    |||||||||  ||  |||| || |||||||||||||| ||||||||| ||| |||||        ||| |||||||||||||| ||| ||||||| ||||    
T  31971883 taaaaacacccctgaagataaacccaccaaaacacataaccacctaaaacaaactcc-aaaaaaacaagcactgtaaacacggtatcaaccaccgcccat 31971981  T
Q  356 cgtcac 361  Q
    ||||||    
T  31971982 cgtcac 31971987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 156 - 310
Target Start/End: Original strand, 5859931 - 5860085
Alignment:
Q  156 gaatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacc 255  Q
    |||||||||||||| ||||||| ||||||| |||||||| | | ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5859931 gaatcggcaaatattattaaacgtcatccccgcaagacgcatgatatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacc 5860030  T
Q  256 taaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagact 310  Q
    |||||||||  ||| |||| |  |||||||||||||||||||||||| |||||||    
T  5860031 taaaaacacccctaaagataatcccaccaaaacacatcaccacctaaaacagact 5860085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 157 - 302
Target Start/End: Original strand, 47325534 - 47325678
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 256  Q
    ||||||||||||| ||||||| ||||||  | |||||| ||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  47325534 aatcggcaaatattattaaacgtcatcctcgtaagacgcaaggtatggacgaaacaagatacaaatggtgctgcatatagacggtacaccataaccacct 47325633  T
Q  257 aaaaacacatctagagattaatccaccaaaacacatcaccacctaa 302  Q
    |||||||| |||  |||| || ||||||||||||||||||||||||    
T  47325634 aaaaacac-tctgaagataaacccaccaaaacacatcaccacctaa 47325678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 157 - 312
Target Start/End: Complemental strand, 10244612 - 10244457
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 256  Q
    ||||||||||||| |||||||  |||| | |||||||| ||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  10244612 aatcggcaaatattattaaactccatctccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacagtacaccataaccacct 10244513  T
Q  257 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactcc 312  Q
    ||||||||  ||  |||| | ||||| ||||||||||||||||||| ||| |||||    
T  10244512 aaaaacacccctgaagataagtccacgaaaacacatcaccacctaaaacaaactcc 10244457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 157 - 310
Target Start/End: Complemental strand, 25161240 - 25161088
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 256  Q
    ||||||||||||| ||||||| ||||||| | ||||  |||||||||  |||| |||||| |||||||||||| ||||||||||||||||||||||||||    
T  25161240 aatcggcaaatattattaaacgtcatccccgtaagatttaaggtatgaacgaaacaagatgcaaatggtgccgtatatagacggtacaccataaccacct 25161141  T
Q  257 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagact 310  Q
    ||||||||  || ||||| || |||||||||||||||||||||||| |||||||    
T  25161140 aaaaacac-cctggagataaacccaccaaaacacatcaccacctaaaacagact 25161088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 157 - 302
Target Start/End: Original strand, 33434480 - 33434625
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 256  Q
    ||||||||||||| |||||||  |||||| |||| ||| ||||||||| |||| ||||||||||||||| | | ||||||||||||||||||||||||||    
T  33434480 aatcggcaaatattattaaacgccatccccgcaatacgcaaggtatggacgaagcaagatacaaatggttctgtatatagacggtacaccataaccacct 33434579  T
Q  257 aaaaacacatctagagattaatccaccaaaacacatcaccacctaa 302  Q
    ||||||||  || || || || ||||||||||||||||||||||||    
T  33434580 aaaaacacccctggaaataaacccaccaaaacacatcaccacctaa 33434625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 158 - 361
Target Start/End: Complemental strand, 3867545 - 3867344
Alignment:
Q  158 atcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccaccta 257  Q
    |||||||||||| ||||||| ||||||| |||||||||||||||| | |||| |||||||||||||||||| |||||||||||||||||||||| || ||    
T  3867545 atcggcaaatattattaaacttcatccc-gcaagacgtaaggtattgacgaaacaagatacaaatggtgccacatatagacggtacaccataacaacata 3867447  T
Q  258 aaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactccnnnnnnnncaaac-actgtaaacacggcatccaccaccgtccatc 356  Q
    |||||||  ||  |||| ||  |||||||||||||||||||| || ||| |||||         |||| ||||||||||||  |||||||||||||||||    
T  3867446 aaaacacccctgaagataaactcaccaaaacacatcaccacccaaaacaaactccttcacaa--aaacaactgtaaacacgatatccaccaccgtccatc 3867349  T
Q  357 gtcac 361  Q
    |||||    
T  3867348 gtcac 3867344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 196 - 312
Target Start/End: Complemental strand, 38306653 - 38306537
Alignment:
Q  196 aaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacatctagagattaatccaccaaaacacatcac 295  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||| || | |||||||||||||||    
T  38306653 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacccctaaagataaaccaaccaaaacacatcac 38306554  T
Q  296 cacctaacacagactcc 312  Q
    ||||||| ||| |||||    
T  38306553 cacctaaaacaaactcc 38306537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 158 - 312
Target Start/End: Original strand, 41089396 - 41089547
Alignment:
Q  158 atcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccaccta 257  Q
    |||||||||||| ||||||   |||| |||||||||  ||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  41089396 atcggcaaatattattaaatgccatctctgcaagac--aaggtatggacgaaacaagatacaa-tggtgccgcatatagacggtacaccataaccaccta 41089492  T
Q  258 aaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactcc 312  Q
    |||||||   |  |||| ||||||||||||||||||| ||||||| |||||||||    
T  41089493 aaaacacccatgaagataaatccaccaaaacacatcatcacctaaaacagactcc 41089547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 157 - 308
Target Start/End: Original strand, 3419048 - 3419197
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 256  Q
    ||||| ||||||| ||||||| ||||||| |||||||| ||||||||| |||| ||||||||||| | ||||||  ||||||||||||||||||||||||    
T  3419048 aatcgacaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaacgttgccgc--atagacggtacaccataaccacct 3419145  T
Q  257 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacaga 308  Q
    ||||||||  ||  |||| ||  |||||||||||| |||||||||| |||||    
T  3419146 aaaaacactcctgaagataaactcaccaaaacacaacaccacctaaaacaga 3419197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 156 - 261
Target Start/End: Original strand, 42454382 - 42454487
Alignment:
Q  156 gaatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacc 255  Q
    ||||| |||||||| ||||||||||||||| |||||||| ||| ||| | |||| |||| ||||||||||||||||||||||| ||||||||||||||||    
T  42454382 gaatcagcaaatattattaaacatcatccccgcaagacgcaagatatagacgaaacaaggtacaaatggtgccgcatatagacagtacaccataaccacc 42454481  T
Q  256 taaaaa 261  Q
    ||||||    
T  42454482 taaaaa 42454487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 159 - 312
Target Start/End: Complemental strand, 37795426 - 37795273
Alignment:
Q  159 tcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacctaa 258  Q
    ||||||||||| ||||||| || ||||  ||||||| ||||||||| |||| |||||||||||||||| |||   || ||||||||||||||||||||||    
T  37795426 tcggcaaatattattaaacgtcgtccccacaagacgcaaggtatggacgaaacaagatacaaatggtgtcgcgattaaacggtacaccataaccacctaa 37795327  T
Q  259 aaacacatctagagattaatccaccaaaacacatcaccacctaacacagactcc 312  Q
    ||||||   |  |||| || |||| |||||| |||||||||||| |||||||||    
T  37795326 aaacacccatgaagataaacccacaaaaacatatcaccacctaaaacagactcc 37795273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 159 - 312
Target Start/End: Complemental strand, 37795754 - 37795601
Alignment:
Q  159 tcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacctaa 258  Q
    ||||||||||| ||||||| || ||||  ||||||| ||||||||| |||| |||||||||||||||| |||   || ||||||||||||||||||||||    
T  37795754 tcggcaaatattattaaacgtcgtccccacaagacgcaaggtatggacgaaacaagatacaaatggtgtcgcgattaaacggtacaccataaccacctaa 37795655  T
Q  259 aaacacatctagagattaatccaccaaaacacatcaccacctaacacagactcc 312  Q
    ||||||   |  |||| || |||| |||||| |||||||||||| |||||||||    
T  37795654 aaacacccatgaagataaacccacaaaaacatatcaccacctaaaacagactcc 37795601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 206 - 350
Target Start/End: Original strand, 40726203 - 40726347
Alignment:
Q  206 cgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacatctagagattaatccaccaaaacacatcaccacctaacac 305  Q
    |||| ||| ||||||||| |||  |||||||||||||||||||||||||||||||||||  || ||||| || |||||||||||||| ||||||||| ||    
T  40726203 cgaaacaaaatacaaatgatgctacatatagacggtacaccataaccacctaaaaacacccctggagataaacccaccaaaacacattaccacctaaaac 40726302  T
Q  306 agactccnnnnnnnncaaacactgtaaacacggcatccaccaccg 350  Q
    |||||||        ||| ||| |||||||||| |||||||||||    
T  40726303 agactccaaaaaaatcaagcacggtaaacacggtatccaccaccg 40726347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 171 - 308
Target Start/End: Original strand, 3419321 - 3419456
Alignment:
Q  171 attaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacatctag 270  Q
    |||||||  |||||| |||||||| ||||||||| |||| ||||||||||| | |||||||||  |||||||||||||||||||||||||||||  ||      
T  3419321 attaaacgccatccccgcaagacgcaaggtatggacgaaacaagatacaaacgttgccgcata--gacggtacaccataaccacctaaaaacactcctga 3419418  T
Q  271 agattaatccaccaaaacacatcaccacctaacacaga 308  Q
    |||| ||  |||||||||||| |||||||||| |||||    
T  3419419 agataaactcaccaaaacacaacaccacctaaaacaga 3419456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 157 - 302
Target Start/End: Complemental strand, 34391614 - 34391469
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 256  Q
    |||| |||||||| ||||||| ||||||| ||| |||| | ||||||| |||| ||||||||||||  ||||||||||||||| |||||||||||||||     
T  34391614 aatcagcaaatattattaaacgtcatccccgcaggacgcagggtatggacgaaacaagatacaaataatgccgcatatagacgatacaccataaccacca 34391515  T
Q  257 aaaaacacatctagagattaatccaccaaaacacatcaccacctaa 302  Q
    || ||  |  ||  |||| || ||||||||||||||||||||||||    
T  34391514 aacaaagcccctgaagataaacccaccaaaacacatcaccacctaa 34391469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 157 - 296
Target Start/End: Complemental strand, 6585318 - 6585179
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 256  Q
    |||| |||||||| |||||||  |||||| |||||| | |||| |||| |||| |||||||||||||||||| ||||||||||||||||||||||||||     
T  6585318 aatcagcaaatattattaaacgccatccccgcaagatgcaaggaatggacgaaacaagatacaaatggtgccacatatagacggtacaccataaccacca 6585219  T
Q  257 aaaaacacatctagagattaatccaccaaaacacatcacc 296  Q
    || || ||  ||  |||| || ||||| ||||||||||||    
T  6585218 aacaaaacccctgaagataaagccacctaaacacatcacc 6585179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 162 - 311
Target Start/End: Complemental strand, 43482331 - 43482183
Alignment:
Q  162 gcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaa 261  Q
    |||||||| ||||||| ||||||| | | |||| ||||||||| ||||  ||||||||||| |||| ||||| ||||||||||||| |||||||||||||    
T  43482331 gcaaatattattaaacgtcatccccgta-gacgcaaggtatggacgaaataagatacaaatagtgctgcatacagacggtacaccacaaccacctaaaaa 43482233  T
Q  262 cacatctagagattaatccaccaaaacacatcaccacctaacacagactc 311  Q
    ||    | ||||| || |||| |||||||| |||||||||| ||||||||    
T  43482232 catccattgagataaacccacaaaaacacaacaccacctaaaacagactc 43482183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 157 - 258
Target Start/End: Original strand, 48161690 - 48161790
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 256  Q
    |||| |||||||| ||||||| |||||||||||||||  ||| ||||| |||| ||| |||||||| ||||||||||||||||| |||||||||||||||    
T  48161690 aatcagcaaatattattaaacgtcatccctgcaagacacaagatatggacgaa-caaaatacaaatagtgccgcatatagacggcacaccataaccacct 48161788  T
Q  257 aa 258  Q
    ||    
T  48161789 aa 48161790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 159 - 254
Target Start/End: Original strand, 11378772 - 11378866
Alignment:
Q  159 tcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccac 254  Q
    ||||||||||| |||||||  || ||| |||||||| ||||||||| ||||| |||||||| ||| ||||||||||| ||||||||||||||||||    
T  11378772 tcggcaaatattattaaacgccaaccccgcaagacgcaaggtatggacgaat-aagatacagatgatgccgcatataaacggtacaccataaccac 11378866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 219
Target Start/End: Original strand, 40726140 - 40726202
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagataca 219  Q
    ||||||||||||| ||||||  ||||||| |||||||| ||||||||| |||| |||||||||    
T  40726140 aatcggcaaatattattaaatgtcatccccgcaagacgcaaggtatggacgaaacaagataca 40726202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 231
Target Start/End: Original strand, 35745481 - 35745555
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgca 231  Q
    |||| |||||||| ||||||| ||||| | | || ||| ||||||||| |||| |||||||||||||||| ||||    
T  35745481 aatcagcaaatattattaaacgtcatctccgtaaaacgcaaggtatggacgaaacaagatacaaatggtgtcgca 35745555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 2e-47; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 156 - 312
Target Start/End: Complemental strand, 30964870 - 30964714
Alignment:
Q  156 gaatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacc 255  Q
    |||||| ||||||| |||||||| ||||||||||||||| ||||||||| |||| ||||||||||||| ||  |||||||||||||||||||||||||||    
T  30964870 gaatcgacaaatattattaaacaccatccctgcaagacgcaaggtatggacgaaacaagatacaaatgatgttgcatatagacggtacaccataaccacc 30964771  T
Q  256 taaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactcc 312  Q
    |||||||||  || ||||| || |||||||||||||||||||||||| |||||||||    
T  30964770 taaaaacactcctggagataaacccaccaaaacacatcaccacctaaaacagactcc 30964714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 157 - 312
Target Start/End: Original strand, 27555579 - 27555735
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccct-gcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacc 255  Q
    ||||||||||||| |||||||  ||||||  |||||||| ||||||||| |||| |||||||||||| |||||||||||||| |||||||||||||||||    
T  27555579 aatcggcaaatattattaaacgccatcccccgcaagacgcaaggtatggacgaaacaagatacaaattgtgccgcatatagatggtacaccataaccacc 27555678  T
Q  256 taaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactcc 312  Q
    |||||||||  ||  |||| || |||||||||||||||||||||||| ||| |||||    
T  27555679 taaaaacacccctgaagataaacccaccaaaacacatcaccacctaaaacaaactcc 27555735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 156 - 294
Target Start/End: Complemental strand, 35329440 - 35329302
Alignment:
Q  156 gaatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacc 255  Q
    |||||||||||||| | |||||  |||||| |||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  35329440 gaatcggcaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgctgcatatagacggtacaccataaccacc 35329341  T
Q  256 taaaaacacatctagagattaatccaccaaaacacatca 294  Q
    |||||| ||   |  |||| || ||||||||||||||||    
T  35329340 taaaaatacccatgaagataaacccaccaaaacacatca 35329302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 157 - 264
Target Start/End: Original strand, 8705789 - 8705896
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 256  Q
    ||||||||||||| ||||||| |||||||| |||||||  |||||||| |||  || |||||||||||||| ||||||||||||||||||||||||||||    
T  8705789 aatcggcaaatattattaaacgtcatcccttcaagacgcgaggtatggacgaggcaggatacaaatggtgctgcatatagacggtacaccataaccacct 8705888  T
Q  257 aaaaacac 264  Q
    ||||||||    
T  8705889 aaaaacac 8705896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 157 - 254
Target Start/End: Original strand, 46698428 - 46698525
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccac 254  Q
    |||| |||||||| ||||||| |||||| || |||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  46698428 aatcagcaaatattattaaacgtcatccatgaaagacgcaaggtatggtcgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 46698525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 157 - 361
Target Start/End: Complemental strand, 8255459 - 8255255
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 256  Q
    ||||||||||||| |||||||   ||| | ||||||  |||||| ||| |||  ||||||||||||| |||||||||||||||||||| |||||||||||    
T  8255459 aatcggcaaatattattaaacgctatctccgcaagatataaggtgtggacgagacaagatacaaatgatgccgcatatagacggtacatcataaccacct 8255360  T
Q  257 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccgtccatc 356  Q
    ||||||||  ||  |||| ||  ||| ||||||||||||||||||| |||||||||        ||| |||||||||||| | |||||||||   |||||    
T  8255359 aaaaacactcctgaagataaactcacaaaaacacatcaccacctaaaacagactccaaataaaacaagcactgtaaacacagtatccaccacatcccatc 8255260  T
Q  357 gtcac 361  Q
    |||||    
T  8255259 gtcac 8255255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 157 - 361
Target Start/End: Complemental strand, 8268877 - 8268673
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 256  Q
    ||||||||||||| |||||||   ||| | ||||||  |||||| ||| |||  ||||||||||||| |||||||||||||||||||| |||||||||||    
T  8268877 aatcggcaaatattattaaacgctatctccgcaagatataaggtgtggacgagacaagatacaaatgatgccgcatatagacggtacatcataaccacct 8268778  T
Q  257 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccgtccatc 356  Q
    ||||||||  ||  |||| ||  ||| ||||||||||||||||||| |||||||||        ||| |||||||||||| | |||||||||   |||||    
T  8268777 aaaaacactcctgaagataaactcacaaaaacacatcaccacctaaaacagactccaaataaaacaagcactgtaaacacagtatccaccacatcccatc 8268678  T
Q  357 gtcac 361  Q
    |||||    
T  8268677 gtcac 8268673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 157 - 258
Target Start/End: Complemental strand, 7703118 - 7703018
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 256  Q
    ||||||||||||| ||||||| ||||||| |||||||  |||||||||  |||  |||||||||||||||||||||||||||||||||||||||||||||    
T  7703118 aatcggcaaatattattaaacgtcatccccgcaagacacaaggtatggatgaaa-aagatacaaatggtgccgcatatagacggtacaccataaccacct 7703020  T
Q  257 aa 258  Q
    ||    
T  7703019 aa 7703018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 211 - 361
Target Start/End: Complemental strand, 20464967 - 20464818
Alignment:
Q  211 caagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagact 310  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||  |||| || ||||||| | |||||||||||||| ||| |||    
T  20464967 caagatacaaatggtgccgtatatagacggtacaccataaccacctaaaaacacccctgaagataaacccaccaacatacatcaccacctaaaacaaact 20464868  T
Q  311 ccnnnnnnnncaaacactgtaaacacggcatccaccaccgtccatcgtcac 361  Q
     |        ||||| |||||||||||| ||||||||||| ||||||||||    
T  20464867 tc-aaaaaaacaaaccctgtaaacacggtatccaccaccgcccatcgtcac 20464818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 161 - 254
Target Start/End: Complemental strand, 49528514 - 49528421
Alignment:
Q  161 ggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccac 254  Q
    |||||||||||||||||| || ||| |||| || |||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  49528514 ggcaaatatcattaaacaccaaccccgcaaaacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccaaaaccac 49528421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 156 - 252
Target Start/End: Complemental strand, 2826214 - 2826118
Alignment:
Q  156 gaatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataacc 252  Q
    ||||| |||||||| ||||||| ||||| |||||||||| ||||||||| || | ||||||||||||||||||||||||| ||||||||||||||||    
T  2826214 gaatcagcaaatattattaaacgtcatctctgcaagacgcaaggtatggacggaacaagatacaaatggtgccgcatatatacggtacaccataacc 2826118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 156 - 261
Target Start/End: Complemental strand, 4306137 - 4306033
Alignment:
Q  156 gaatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacc 255  Q
    |||||||||||||| ||||||  ||||||| | |||||| ||||||||  ||||  |||||| |||||||||||||||||||||||||||||||||||||    
T  4306137 gaatcggcaaatattattaaatgtcatccccggaagacgcaaggtatgaacgaaa-aagatataaatggtgccgcatatagacggtacaccataaccacc 4306039  T
Q  256 taaaaa 261  Q
    ||||||    
T  4306038 taaaaa 4306033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 157 - 350
Target Start/End: Original strand, 30167212 - 30167407
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgc--cgcatatagacggtacaccataaccac 254  Q
    ||||| ||||||| ||||||| ||||||  |||||||| ||||||||| |||| ||||||||||||| |||     ||||||||||||||| |||||||     
T  30167212 aatcgacaaatattattaaacgtcatcctcgcaagacgcaaggtatggacgaaacaagatacaaatgatgcaaaaaatatagacggtacactataaccat 30167311  T
Q  255 ctaaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccg 350  Q
    ||||||| ||  ||  |||| || |||||||||||||||||  ||||| |||||||||        ||| |||||||||||||| |||||||||||    
T  30167312 ctaaaaataccactgaagataaacccaccaaaacacatcacatcctaaaacagactccaaaaaaatcaagcactgtaaacacggtatccaccaccg 30167407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 157 - 312
Target Start/End: Original strand, 36689454 - 36689609
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 256  Q
    ||||| ||||||| |||||| | |||| | ||||||||  |||||||| ||||  ||||||||||||||  |||||||||||||||||| |||||||| |    
T  36689454 aatcgacaaatattattaaataccatctccgcaagacgcgaggtatggacgaaataagatacaaatggtatcgcatatagacggtacactataaccactt 36689553  T
Q  257 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactcc 312  Q
    ||||||||  ||  |||| ||  |||||||||||||||||| |||| ||| |||||    
T  36689554 aaaaacacccctgaagataaactcaccaaaacacatcaccatctaaaacatactcc 36689609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 158 - 294
Target Start/End: Original strand, 11281375 - 11281511
Alignment:
Q  158 atcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccaccta 257  Q
    |||||||||||| ||| ||| ||||| |  ||||||| ||| ||||| |||| || |||| ||||||||| | |||||||||||| ||||||||||||||    
T  11281375 atcggcaaatattattgaacgtcatctccacaagacgcaagatatggacgaaacatgatataaatggtgctgtatatagacggtataccataaccaccta 11281474  T
Q  258 aaaacacatctagagattaatccaccaaaacacatca 294  Q
    ||||||| |||  |||| |  |||| |||||||||||    
T  11281475 aaaacacctctgaagataaccccactaaaacacatca 11281511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 163 - 252
Target Start/End: Original strand, 35341006 - 35341097
Alignment:
Q  163 caaatatcattaaacatcatccct--gcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataacc 252  Q
    ||||||| ||||||| |||||||   |||||||| || |||||| |||| |||||||||||||||||| |||||||||||||||||||||||    
T  35341006 caaatattattaaacgtcatccccccgcaagacgcaatgtatggacgaaacaagatacaaatggtgccacatatagacggtacaccataacc 35341097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 52868792 - 52868859
Alignment:
Q  188 caagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacc 255  Q
    ||||||||||||||||  ||||| ||||||||||||||| ||| ||||||||||||||||||||||||    
T  52868792 caagacgtaaggtatgaacgaattaagatacaaatggtgtcgcgtatagacggtacaccataaccacc 52868859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 162 - 255
Target Start/End: Original strand, 31050315 - 31050408
Alignment:
Q  162 gcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacc 255  Q
    |||||||| ||||||| || |||| |||||| |  | |||||| |||| ||||||||||||| || ||||||||||||||||||||||||||||    
T  31050315 gcaaatattattaaacgtcgtccccgcaagatgcgatgtatggacgaaacaagatacaaatgatgtcgcatatagacggtacaccataaccacc 31050408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 157 - 240
Target Start/End: Complemental strand, 9750198 - 9750116
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacgg 240  Q
    ||||| ||||||| ||||||| ||||||| |||||||| | ||| ||| |||| ||||||||||||||||||||||||||||||    
T  9750198 aatcgacaaatattattaaacgtcatccccgcaagacgca-ggtttggacgaaacaagatacaaatggtgccgcatatagacgg 9750116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 161 - 302
Target Start/End: Complemental strand, 3117922 - 3117781
Alignment:
Q  161 ggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaa 260  Q
    ||||||||| ||||||| |||| ||||||||||||||||||||| ||||  |||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  3117922 ggcaaatattattaaacgtcattcctgcaagacgtaaggtatggacgaaataagatacaaatggtgcagcatatagacgctacaccataaccacctaaaa 3117823  T
Q  261 acacatctagagattaatccaccaaaacacatcaccacctaa 302  Q
    |||| || | |||| || | |||||| |||||||||||||||    
T  3117822 acacctccaaagataaacctaccaaaccacatcaccacctaa 3117781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 157 - 312
Target Start/End: Complemental strand, 3254389 - 3254234
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 256  Q
    ||||||||||||| ||||||| ||||||| |||||||| ||||||||| |||| ||||||||||||||||||| |||||||  |||||||||| ||||||    
T  3254389 aatcggcaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgtatatagatagtacaccatagccacct 3254290  T
Q  257 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactcc 312  Q
    ||||||||  ||  | || || ||||||||| |||||||||||||| |||||||||    
T  3254289 aaaaacacccctgaaaataaacccaccaaaatacatcaccacctaaaacagactcc 3254234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 157 - 312
Target Start/End: Complemental strand, 15944431 - 15944276
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 256  Q
    ||||||||||||| |||||||  |||||||| |||||| ||||||||| |  |  ||||||||||||||| ||||||||||||||||||||||| |||||    
T  15944431 aatcggcaaatattattaaacgccatccctgtaagacgcaaggtatggacagaagaagatacaaatggtgtcgcatatagacggtacaccataaacacct 15944332  T
Q  257 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactcc 312  Q
    ||||| ||  ||  | || || |||||||||||||||||||||||| |||||||||    
T  15944331 aaaaatacccctgaatataaacccaccaaaacacatcaccacctaaaacagactcc 15944276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 156 - 264
Target Start/End: Complemental strand, 10542263 - 10542156
Alignment:
Q  156 gaatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacc 255  Q
    ||||||| |||||| ||||| |  |||||| |||||| | ||| ||||  |||| ||||||||||| ||||||||||||||||| |||||||||||||||    
T  10542263 gaatcggaaaatattattaagcgccatccc-gcaagatgcaagatatgaacgaaacaagatacaaaaggtgccgcatatagacgatacaccataaccacc 10542165  T
Q  256 taaaaacac 264  Q
    |||||||||    
T  10542164 taaaaacac 10542156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 200 - 254
Target Start/End: Original strand, 33697789 - 33697843
Alignment:
Q  200 tatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccac 254  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  33697789 tatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 33697843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 156 - 241
Target Start/End: Original strand, 15132488 - 15132573
Alignment:
Q  156 gaatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggt 241  Q
    ||||| |||||||| |||||||  ||||   |||||||||||||||||| | || ||||||||||||| ||||| |||||||||||    
T  15132488 gaatcagcaaatattattaaacgccatcatcgcaagacgtaaggtatggacaaaacaagatacaaatgatgccgtatatagacggt 15132573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 14663480 - 14663414
Alignment:
Q  162 gcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgc 230  Q
    |||||||| ||||||| |||||| ||||||||| ||||||||| |||| ||||||||||||| ||||||    
T  14663480 gcaaatattattaaacgtcatcc-tgcaagacgaaaggtatggacgaa-caagatacaaatgctgccgc 14663414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 14663414 - 14663357
Alignment:
Q  255 ctaaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactcc 312  Q
    ||||||||||  || ||||| || |||| ||||||||||||||||||| |||||||||    
T  14663414 ctaaaaacacccctggagataaacccacgaaaacacatcaccacctaaaacagactcc 14663357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 158 - 311
Target Start/End: Complemental strand, 19349 - 19196
Alignment:
Q  158 atcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataa-ccacct 256  Q
    |||||||||||| ||||||| ||||||  |||||||| | ||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  19349 atcggcaaatattattaaacgtcatcctcgcaagacgcatggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataacccacct 19250  T
Q  257 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactc 311  Q
    ||||| | ||||  |||| || ||||||||| |||||||||||||| ||||||||    
T  19249 aaaaa-aaatctgaagataaacccaccaaaatacatcaccacctaaaacagactc 19196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 6e-35; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 157 - 312
Target Start/End: Complemental strand, 387608 - 387453
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 256  Q
    ||||| || |||| ||||||| ||||| | ||||| || | ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  387608 aatcgacagatattattaaacgtcatcaccgcaagtcgcagggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccactt 387509  T
Q  257 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactcc 312  Q
    ||||||||   |  |||| || |||||||||||||||||||||||| |||||||||    
T  387508 aaaaacacccatgaagataaacccaccaaaacacatcaccacctaaaacagactcc 387453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 157 - 361
Target Start/End: Complemental strand, 10524529 - 10524328
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 256  Q
    ||||||||||||| |||||||  || |||||||||||| ||||||||| |||| ||| ||||||||||||| ||||||||| ||||||||||||||||||    
T  10524529 aatcggcaaatattattaaacgcca-ccctgcaagacgcaaggtatggacgaaacaatatacaaatggtgcagcatatagatggtacaccataaccacct 10524431  T
Q  257 aaaaacacatctagagattaatccaccaaaacacatcaccacctaacacagactccnnnnnnnncaaacactgtaaacacggcatccaccaccgtccatc 356  Q
    ||||||||  ||  |||| || |||||||||||| |||||  |||| ||| |||||        ||| ||| |||||||||| ||||||||||| |||||    
T  10524430 aaaaacacccctgaagataaacccaccaaaacacgtcaccgtctaaaacaaactcc--aaaaaacaagcaccgtaaacacggtatccaccaccgcccatc 10524333  T
Q  357 gtcac 361  Q
    |||||    
T  10524332 gtcac 10524328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 157 - 311
Target Start/End: Original strand, 39338510 - 39338665
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 256  Q
    ||||||||||||| |||||||  ||||   | |||||| || |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  39338510 aatcggcaaatattattaaacgccatcatcgtaagacgcaatgtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 39338609  T
Q  257 aaaaacacatctagagattaatccaccaaaacacatca-ccacctaacacagactc 311  Q
     |||||||  ||  |||| || |||||||||||||||| |||||||| ||||||||    
T  39338610 gaaaacacccctgaagataaacccaccaaaacacatcacccacctaaaacagactc 39338665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 157 - 302
Target Start/End: Complemental strand, 14405630 - 14405487
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 256  Q
    |||| |||||||| ||||||| | || ||||||||||||||||||||  |||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  14405630 aatcagcaaatattattaaacgttattcctgcaagacgtaaggtatgaacgaa-caagatacaaatggtgctgcatatagacggtacaccataaccacct 14405532  T
Q  257 aaaaacacatctagagattaatccaccaaaacacatcaccacctaa 302  Q
    || ||  |  ||| ||| ||| | ||||||||||||||||||||||    
T  14405531 aacaaagcccctaaaga-taacctaccaaaacacatcaccacctaa 14405487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 157 - 251
Target Start/End: Original strand, 14436916 - 14437010
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataac 251  Q
    |||| |||||||| |||||||  |||||| |||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  14436916 aatcagcaaatattattaaacgccatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataac 14437010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 156 - 302
Target Start/End: Complemental strand, 5254685 - 5254540
Alignment:
Q  156 gaatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacc 255  Q
    ||||| |||||||| ||||||| ||||||  |||||||||||||||||| ||||  | ||||||||||||||||||||||||||||||||||||||| ||    
T  5254685 gaatcagcaaatattattaaacgtcatcctcgcaagacgtaaggtatggacgaaata-gatacaaatggtgccgcatatagacggtacaccataacctcc 5254587  T
Q  256 taaaaacacatctagagattaatccaccaaaacacatcaccacctaa 302  Q
     || ||  |   |  |||| || ||||||||||||||||||||||||    
T  5254586 aaacaaagctcatgaagataaacccaccaaaacacatcaccacctaa 5254540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 163 - 264
Target Start/End: Original strand, 41877207 - 41877308
Alignment:
Q  163 caaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaac 262  Q
    ||||||| |||||||  |||||| |||||||| ||| ||||| |||| ||| ||||||||||| ||| |||||||||||||||||||||||||| |||||    
T  41877207 caaatattattaaactccatccccgcaagacgcaagatatggacgaaacaatatacaaatggtaccgtatatagacggtacaccataaccacctgaaaac 41877306  T
Q  263 ac 264  Q
    ||    
T  41877307 ac 41877308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 156 - 252
Target Start/End: Original strand, 43816095 - 43816191
Alignment:
Q  156 gaatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataacc 252  Q
    |||||||||||||| ||||||| |||| || |||| ||| ||||||||| |||| |||  |||||||| ||||||||||||||||||||||||||||    
T  43816095 gaatcggcaaatattattaaacgtcattcccgcaaaacgcaaggtatggacgaaacaaagtacaaatgatgccgcatatagacggtacaccataacc 43816191  T

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Target: chr2; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 156 - 254
Target Start/End: Complemental strand, 3745774 - 3745676
Alignment:
Q  156 gaatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccac 254  Q
    |||||||||||||| ||||||  |||||||   |||||| ||||||||| |||| ||||||||||||||||| ||||||||| |||||| |||||||||    
T  3745774 gaatcggcaaatattattaaatgtcatccccataagacgcaaggtatggacgaaacaagatacaaatggtgctgcatatagatggtacatcataaccac 3745676  T

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Target: chr2; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 173 - 255
Target Start/End: Original strand, 17116553 - 17116635
Alignment:
Q  173 taaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacc 255  Q
    ||||| ||||||| |||||||| ||||||||| |||  ||||||||||||| ||||||||||||||||||||| |||||||||    
T  17116553 taaacgtcatccccgcaagacgcaaggtatggacgagacaagatacaaatgatgccgcatatagacggtacactataaccacc 17116635  T

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Target: chr2; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 157 - 255
Target Start/End: Original strand, 14106172 - 14106269
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacc 255  Q
    |||| |||||||| |||||||  |||||  |||||||| | |||||| | ||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  14106172 aatcagcaaatattattaaacgccatcctcgcaagacgcagggtatgac-gaaacaagatagaaatggtgccgcatatagacggtacaccataaccacc 14106269  T

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Target: chr2; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 164 - 253
Target Start/End: Original strand, 13512495 - 13512584
Alignment:
Q  164 aaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataacca 253  Q
    |||||| ||||||| |||| || |||||||| || |||||| |||| ||| ||||||||| |||||||||||||||||||| ||||||||    
T  13512495 aaatattattaaacgtcattcccgcaagacgcaatgtatggacgaaacaaaatacaaatgatgccgcatatagacggtacaacataacca 13512584  T

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Target: chr2; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 187 - 310
Target Start/End: Original strand, 22888571 - 22888694
Alignment:
Q  187 gcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacatctagagattaatccaccaaa 286  Q
    |||||||| || ||||||  ||| |||| || |||||||||| ||||||||||||| | |||||||| |||| |||||  ||  |||| || ||||||||    
T  22888571 gcaagacgcaatgtatggatgaaacaaggtagaaatggtgccacatatagacggtatatcataaccaactaagaacacccctgaagataaacccaccaaa 22888670  T
Q  287 acacatcaccacctaacacagact 310  Q
    || ||||||||||||| |||||||    
T  22888671 acgcatcaccacctaaaacagact 22888694  T

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Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 7874654 - 7874610
Alignment:
Q  211 caagatacaaatggtgccgcatatagacggtacaccataaccacc 255  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  7874654 caagatacaaatggcgccgcatatagacggtacaccataaccacc 7874610  T

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Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 158 - 234
Target Start/End: Complemental strand, 15457893 - 15457817
Alignment:
Q  158 atcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatat 234  Q
    |||||||||||  ||||||| ||||||| |||||||| | | ||||| |||| ||||||||||||||||||||||||    
T  15457893 atcggcaaataatattaaacgtcatccccgcaagacgcatgatatggacgaaacaagatacaaatggtgccgcatat 15457817  T

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Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 157 - 255
Target Start/End: Complemental strand, 7461107 - 7461010
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacc 255  Q
    |||| |||||||| ||||||| ||||||| |||||||| |  ||||| | ||| ||| ||||||||||||  |||||||||| ||||||||||||||||    
T  7461107 aatcagcaaatattattaaacgtcatccccgcaagacgcagagtatgac-gaaacaaaatacaaatggtgttgcatatagacagtacaccataaccacc 7461010  T

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Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 156 - 254
Target Start/End: Original strand, 45311452 - 45311550
Alignment:
Q  156 gaatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccac 254  Q
    |||||||| ||||| |||||||  || ||| |||||| | |||| | || |||| |||||||||||||||||| |||||| |||| |||||||||||||    
T  45311452 gaatcggccaatattattaaacgccaaccccgcaagatgcaaggaaaggacgaaacaagatacaaatggtgccacatatatacggaacaccataaccac 45311550  T

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Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 163 - 252
Target Start/End: Original strand, 43248882 - 43248971
Alignment:
Q  163 caaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataacc 252  Q
    ||||||| ||||||| ||||||   ||||||  ||||||||| |||| ||||||| |||||| ||||||||||||||||| | |||||||    
T  43248882 caaatattattaaacgtcatcctcacaagacacaaggtatggacgaaacaagatataaatggcgccgcatatagacggtatatcataacc 43248971  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 240
Target Start/End: Complemental strand, 7455669 - 7455601
Alignment:
Q  171 attaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacgg 240  Q
    ||||||| ||||||| |||||||| | ||||||  ||||  |||||||||||||||||||| ||||||||    
T  7455669 attaaacgtcatccccgcaagacgca-ggtatgaacgaaataagatacaaatggtgccgcaaatagacgg 7455601  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 254
Target Start/End: Complemental strand, 15457307 - 15457278
Alignment:
Q  225 tgccgcatatagacggtacaccataaccac 254  Q
    ||||||||||||||||||||||||||||||    
T  15457307 tgccgcatatagacggtacaccataaccac 15457278  T

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Target: scaffold0434 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 188 - 312
Target Start/End: Original strand, 2353 - 2477
Alignment:
Q  188 caagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacatctagagattaatccaccaaaa 287  Q
    ||||||| ||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||   |  |||| || ||||||||     
T  2353 caagacgcaaggtatggacgaaacaagatacagatggtgccgcatatagacggtacaccataaccacctaaaaacacccttgaagataaacccaccaaac 2452  T
Q  288 cacatcaccacctaacacagactcc 312  Q
    ||||||||||||||| ||| |||||    
T  2453 cacatcaccacctaaaacaaactcc 2477  T

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Target: scaffold0085 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 157 - 310
Target Start/End: Complemental strand, 48767 - 48614
Alignment:
Q  157 aatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 256  Q
    |||| |||||||| ||| ||| || |||| |||||||  ||| ||||| | || ||||||||||||||||||||||||||||||||||||||||||||||    
T  48767 aatccgcaaatattattcaacgtcctccccgcaagacacaagatatggactaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 48668  T
Q  257 aaaaacacatctagagattaatcc-accaaaacacatcaccacctaacacagact 310  Q
    ||||||||   || ||| |||||| |||||||||||||| ||||||| |||||||    
T  48667 aaaaacacccttaaaga-taatcctaccaaaacacatcatcacctaaaacagact 48614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 163 - 302
Target Start/End: Complemental strand, 6131 - 5991
Alignment:
Q  163 caaatatcattaaacatcatccctgcaagacgtaaggtatggccgaatcaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaac 262  Q
    ||||||| ||||||| ||||||| |||||||| ||| ||||  |||  ||||||||||||||||||| ||||||||| |||| |||||||||||||||||    
T  6131 caaatattattaaacgtcatccccgcaagacgcaagatatgaacgagacaagatacaaatggtgccgtatatagacgttacatcataaccacctaaaaac 6032  T
Q  263 acatctagagattaa-tccaccaaaacacatcaccacctaa 302  Q
    || |||  |||| ||  |||| |||||||||||||||||||    
T  6031 acctctgaagataaaccccacaaaaacacatcaccacctaa 5991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 35472 - 35525
Alignment:
Q  156 gaatcggcaaatatcattaaacatcatccctgcaagacgtaaggtatggccgaa 209  Q
    |||||||||||||| ||| ||| ||||||| | |||||||||||||||| ||||    
T  35472 gaatcggcaaatattattgaacgtcatccccgtaagacgtaaggtatggacgaa 35525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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