View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14483_low_16 (Length: 435)
Name: NF14483_low_16
Description: NF14483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14483_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 7627534 - 7627119
Alignment:
| Q |
1 |
agcagcagtggtttgggctatgacagcattgatgaacaatccaagagtgatgaacaaggttcaaatggaaatcagaaacttatatgaagacaaagatttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7627534 |
agcagcagtggtttgggctatgacagcattgatgaacaatccaagagtgatgaacaaggttcaaatggaaatcagaaacttatatgaagacaaagatttt |
7627435 |
T |
|
| Q |
101 |
ataaatgaagatgatattgaaaagcttccttatcttaaatcagtagtgaaagagacattaagattattccctccatcaccattactattaccaagagaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
7627434 |
ataaatgaagatgatattgaaaagcttccttatcttaaatcagtagtgaaagagacattaagattattccctccatcaccattactattgccaagagaaa |
7627335 |
T |
|
| Q |
201 |
caatagaaagttgtaacatagatggttatgagattaaaccaaaaactctagtctatgttaatgcatgggccatagcaagggatcctgagaattggaatga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7627334 |
caatagaaagttgtaacatagatggttatgagattaaaccaaaaactctagtctatgttaatgcatgggccatagcaagggatcctgagaattggaatga |
7627235 |
T |
|
| Q |
301 |
tcctgaagagttttatcctgaaaggttcattataagttcagtggattttaaagggaagaattttgagttgattccatttggaagtggaagaagaatgtgt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7627234 |
ccctgaagagttttatcctgaaaggttcattataagttcagtggattttaaagggaagaattttgagttgattccatttggaagtggaagaagaatgtgt |
7627135 |
T |
|
| Q |
401 |
cctgcaatgaacatgg |
416 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
7627134 |
cctgcaatgaacatgg |
7627119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 7622983 - 7622568
Alignment:
| Q |
1 |
agcagcagtggtttgggctatgacagcattgatgaacaatccaagagtgatgaacaaggttcaaatggaaatcagaaacttatatgaagacaaagatttt |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7622983 |
agcagtagtggtttgggctatgacagcattgatgaacaatccaagagtgatgaacaaggttcaaatggaaatcagaaacttatatgaagacaaagatttt |
7622884 |
T |
|
| Q |
101 |
ataaatgaagatgatattgaaaagcttccttatcttaaatcagtagtgaaagagacattaagattattccctccatcaccattactattaccaagagaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
7622883 |
ataaatgaagatgatattgaaaagcttccttatcttaaatcagtagtgaaagagacattaagattattccctccatcaccattactattgccaagagaaa |
7622784 |
T |
|
| Q |
201 |
caatagaaagttgtaacatagatggttatgagattaaaccaaaaactctagtctatgttaatgcatgggccatagcaagggatcctgagaattggaatga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7622783 |
caatagaaagttgtaacatagatggttatgagattaaaccaaaaactctagtctatgttaatgcatgggccatagcaagggatcctgagaattggaatga |
7622684 |
T |
|
| Q |
301 |
tcctgaagagttttatcctgaaaggttcattataagttcagtggattttaaagggaagaattttgagttgattccatttggaagtggaagaagaatgtgt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7622683 |
ccctgaagagttttatcctgaaaggttcattataagttcagtggattttaaagggaagaattttgagttgattccatttggaagtggaagaagaatgtgt |
7622584 |
T |
|
| Q |
401 |
cctgcaatgaacatgg |
416 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
7622583 |
cctgcaatgaacatgg |
7622568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 7 - 416
Target Start/End: Complemental strand, 7634664 - 7634255
Alignment:
| Q |
7 |
agtggtttgggctatgacagcattgatgaacaatccaagagtgatgaacaaggttcaaatggaaatcagaaacttatatgaagacaaagattttataaat |
106 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
7634664 |
agtggtttgggctatgacaacattgatgaacaatcctagagtgatgaacaaggttcaaatggaaatcagaaacttatatgaagacaaatattttataaat |
7634565 |
T |
|
| Q |
107 |
gaagatgatattgaaaagcttccttatcttaaatcagtagtgaaagagacattaagattattccctccatcaccattactattaccaagagaaacaatag |
206 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||| |||||||||||| | |||||||| || ||||||||||||||| |||||||||||||||||| |
|
|
| T |
7634564 |
gaagatgatattgaaaagctaccttatcttaaagcagtggtgaaagagacaatgagattatttccaccatcaccattactagtaccaagagaaacaatag |
7634465 |
T |
|
| Q |
207 |
aaagttgtaacatagatggttatgagattaaaccaaaaactctagtctatgttaatgcatgggccatagcaagggatcctgagaattggaatgatcctga |
306 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||| || ||||| |
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|
| T |
7634464 |
aaaattgtaacatagatggttatgagattaaaccaaaaactttagtgtatgttaatgcatgggccataggaagggatcctgagaattggaaagaccctga |
7634365 |
T |
|
| Q |
307 |
agagttttatcctgaaaggttcattataagttcagtggattttaaagggaagaattttgagttgattccatttggaagtggaagaagaatgtgtcctgca |
406 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7634364 |
agagttttatcctgaaaggttcattatgagttcagtggactttaaagggaaaaattttgagctaattccatttggaagtggaagaagaatgtgtcctgca |
7634265 |
T |
|
| Q |
407 |
atgaacatgg |
416 |
Q |
| |
|
|||||||||| |
|
|
| T |
7634264 |
atgaacatgg |
7634255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 311 - 402
Target Start/End: Original strand, 22941495 - 22941586
Alignment:
| Q |
311 |
ttttatcctgaaaggttcattataagttcagtggattttaaagggaagaattttgagttgattccatttggaagtggaagaagaatgtgtcc |
402 |
Q |
| |
|
||||||||||||||||| ||| ||||| || |||| ||| || || ||||||||||| ||||||||||| |||||||||||||||||| |
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|
| T |
22941495 |
ttttatcctgaaaggtttattgaaagttgtgtagattataagggaaataattttgagttcattccatttggtgctggaagaagaatgtgtcc |
22941586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 402
Target Start/End: Original strand, 22916834 - 22916886
Alignment:
| Q |
350 |
aaagggaagaattttgagttgattccatttggaagtggaagaagaatgtgtcc |
402 |
Q |
| |
|
||||| || ||||||||||| ||||| ||||| ||||| |||||||||||||| |
|
|
| T |
22916834 |
aaaggtaataattttgagttcattccgtttggcagtggcagaagaatgtgtcc |
22916886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 402
Target Start/End: Complemental strand, 22932253 - 22932201
Alignment:
| Q |
350 |
aaagggaagaattttgagttgattccatttggaagtggaagaagaatgtgtcc |
402 |
Q |
| |
|
||||| || ||||||||||| ||||| ||||| ||||| |||||||||||||| |
|
|
| T |
22932253 |
aaaggtaataattttgagttcattccgtttggcagtggcagaagaatgtgtcc |
22932201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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