View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14483_low_18 (Length: 414)
Name: NF14483_low_18
Description: NF14483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14483_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 171 - 404
Target Start/End: Complemental strand, 23407278 - 23407042
Alignment:
| Q |
171 |
atcactaaaattgtgagataattaacataaaaactaggataccattgacattctgttaccataatgataaaaacaaatcgctagctttaaaacaccgaaa |
270 |
Q |
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| T |
23407278 |
atcactaaaactgtgagataattaacataaaaactaggataccattgacattctgttacgataatgataaaaacaaatcggtagctttaaaacaccgaaa |
23407179 |
T |
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| Q |
271 |
aggaatgcaatcccatttatttatttaccaatcaaatcctctttaatttg--aatctgaaatctcttgtttgcaatcagcacaaaacattttttctttaa |
368 |
Q |
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| T |
23407178 |
aggaatgcaatcccatttatttatttaccaatcaaatcctctttaatttgttattctgagatctcttgtttgcaatcagcacaaaacattttatctttaa |
23407079 |
T |
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| Q |
369 |
gaaacttaaatacaatta-atggtgtttttccctttg |
404 |
Q |
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| T |
23407078 |
gaaactttaatacaattatatggtgtttttccctttg |
23407042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 42 - 168
Target Start/End: Complemental strand, 23407465 - 23407338
Alignment:
| Q |
42 |
ttttccatggttttaagaagaaaaagtgttgtgataacgagtatgatggaaataattgacct-acattcataaaatggtgagagaccaacttacatctcc |
140 |
Q |
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| T |
23407465 |
ttttccatggttttaagaagaaaacgcgttgtgataatgagtatgatggaaagaattggactgatattcatgaaatggtgagagaccaacttacatctcc |
23407366 |
T |
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| Q |
141 |
atccatatatagtgagaaggatctgtct |
168 |
Q |
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| T |
23407365 |
atccatatatagtgagaaggatctgtct |
23407338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 23407562 - 23407523
Alignment:
| Q |
1 |
caccaccaccctccctatgatacatagatctagcaattca |
40 |
Q |
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| T |
23407562 |
caccaccaccctccctatgagacatagatctagcaattca |
23407523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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